CX671292

Overview
NameCX671292
Unique NameCX671292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671292 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.492e-12
Identity = 53/176 (30.11%), Postives = 72/176 (40.91%), Query Frame = 3
Query:  141 NQEGLYLERVKXXXXXXXXXXXXWGRNPRDDSPCSWRGVECDPRSHSVASIDLSNANIAGPFPSLLCRLEXXXXXXXXXXSINSTLPDDISACQNLQHLDLSQNLLTGTLTPALADLPNLKFLDLTGNNFSGDIPESFGRFQKLEVISLVYNLLDGTIPAFLGNISTLKMLNLSYN 668
            N E   L  VK            W  N  D  PC+W  V C      V S+++++  ++G                         L   I    +L  L L  N LTG +   L  L  L+ LDL+GN FSG+IP S G    L  + L  NLL G +P  +  +S L  L+LS+N
Sbjct:   37 NYEVAALMSVKNKMKDEKEVLSGWDINSVD--PCTWNMVGCSSEGF-VVSLEMASKGLSG------------------------ILSTSIGELTHLHTLLLQNNQLTGPIPSELGQLSELETLDLSGNRFSGEIPASLGFLTHLNYLRLSRNLLSGQVPHLVAGLSGLSFLDLSFN 185          
BLAST of CX671292 vs. ExPASy Swiss-Prot
Match: Y4374_ARATH (Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.492e-12
Identity = 54/179 (30.17%), Postives = 83/179 (46.37%), Query Frame = 3
Query:  246 WRGVECDPRSHSVASIDLSNANIAGPFPSLLCRLEXXXXXXXXXXSINSTLPDDISACQNLQHLDLSQNLLTGTLTPALADLPNLKFLDLTGNNFSGDIPESFGRFQKLEVISLVYNLLDGTIPAFLGNISTLKMLNLSYNPFLPGRIPPELGNLTNLEILWLT-ECNLVGEIPDSLGR 779
            W GV C+     + ++ L    + G  P                       P+ IS    L+ L L  NL++G       +L +L FL L  NN SG +P  F  ++ L  ++L  N  +GTIP+ L  +  ++ LNL+ N  L G I P+L  L++L+ + L+   +L G IPD L R
Sbjct:   58 WTGVTCNQDGSRIIAVRLPGVGLNGQIP-----------------------PNTISRLSALRVLSLRSNLISGEFPKDFVELKDLAFLYLQDNNLSGPLPLDFSVWKNLTSVNLSNNGFNGTIPSSLSRLKRIQSLNLANNT-LSGDI-PDLSVLSSLQHIDLSNNYDLAGPIPDWLRR 211          
BLAST of CX671292 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.492e-12
Identity = 48/175 (27.43%), Postives = 80/175 (45.71%), Query Frame = 3
Query:  282 VASIDLSNANIAGPFPSLLCRLEXXXXXXXXXXSINSTLPDDISACQNLQHLDLSQNLLTGTLTPALADLPNLKFLDLTGNNFSGDIPESFGRFQKLEVISLVYNLLDGTIPAFLGNISTLKMLNLSYNPFLPGRIPPELGNLTNLEILWLTECNLVGEIPDSLGRLAKLVDLDL 806
            + +I +   ++ GP P  L  L            +  +LP  I     +Q +    N L+G +   +  L +L+ L ++ NNFSG IP+  GR  KL+ + +  + L G IP    N+  L+   ++ +  +  +IP  +G+ T L  L +    L G IP S   L  L +L L
Sbjct:  101 ITNIKVYAIDVVGPIPPELWTLTYLTNLNLGQNVLTGSLPPAIGNLTRMQWMTFGINALSGPVPKEIGLLTDLRLLGISSNNFSGSIPDEIGRCTKLQQMYIDSSGLSGRIPLSFANLVQLEQAWIA-DLEVTDQIPDFIGDWTKLTTLRIIGTGLSGPIPSSFSNLTSLTELRL 274          
BLAST of CX671292 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 55/190 (28.95%), Postives = 84/190 (44.21%), Query Frame = 3
Query:  237 PC--SWRGVECDPRSHSVASIDLSNANIAGPFPS-LLCRLEXXXXXXXXXXSINSTLPDDISACQNLQHLDLSQNLLTGTLTPALADLPNLKFLDLTGNNFSGDIPESFGRFQKLEVISLVYNLLDGTIPAFLGNISTLKMLNLSYNPFLPGRIPPELGNLTNLEILWLTECNLVGEIPDSLGRLAKLVD 797
            PC  +WRGV C      V  I LS   ++G     +L +L           ++   LP       NLQ L+L+ N  TG  + +L+ +  LK+L+L  N F G I   F +   L  +   +N    ++PA   ++++LK L L  N F  G +    G    LE L +   +  G IP SL  +  + D
Sbjct:   58 PCGQNWRGVTCS--GSRVTQIKLSGLELSGTLGGYMLDKLTSLTELDLSSNNLGGDLPYQFPP--NLQRLNLANNQFTGAASYSLSQITPLKYLNLGHNQFKGQIAIDFSKLDSLTTLDFSFNSFTNSLPATFSSLTSLKSLYLQNNQF-SGTVDVLAG--LPLETLNIANNDFTGWIPSSLKGITLIKD 240          
BLAST of CX671292 vs. ExPASy Swiss-Prot
Match: PGIP1_ORYSJ (Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica GN=FOR1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.718e-11
Identity = 58/196 (29.59%), Postives = 86/196 (43.88%), Query Frame = 3
Query:  312 IAGPFPSLLCRLEXXXXXXXXXXSINSTLPDDISACQNLQHLDLSQNLLTGTLTPALADLPNLKFLDLTGNNFSGDIPESF--GRFQKLEVISLVYNLLDGTIPAFLGNISTLKMLNLSYNP--------FLPGR--------------------IPPELGNLTNLEILWLTECNLVGEIPDSLGRLAKLVDLDLA 809
            ++GP P+ L  L           +++  +PD ++  ++L  +DLS N LTG +  + +DLPNL+ LDL  N  +G IP     G+F+ L    L YN L G IP        +  ++LS+N         F  GR                     PPEL  L       L+   + G +P SL  L+ L  LDL+
Sbjct:  108 LSGPIPACLTALSNLQFLTISHTNVSGVIPDSLARIRSLDSVDLSHNSLTGPIPNSFSDLPNLRSLDLRSNKLTGCIPAGLVQGQFRSL---ILSYNQLTGPIPRDDAQ-DEINTVDLSHNRLTGDASFLFAAGRPIGKVDLSWNDLDFDLSKLVFPPELTYLD------LSHNRIRGTVPRSLAALSTLQTLDLS 293          
BLAST of CX671292 vs. ExPASy Swiss-Prot
Match: MRH1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.718e-11
Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  426 LQHLDLSQNLLTGTLTPALADLPNLKFLDLTGNNFSGDIPESFGRFQKLEVISLVYNLLDGTIPAFLGNISTLKMLNLSYNPF 674
            +Q LDLS   L GTL P L+ L +L+ L L+ N+FSG IP+ +G F+ LEV+ L  N L G IP  L N  +LK L LS N F
Sbjct:   72 VQILDLSGYSLEGTLAPELSQLSDLRSLILSRNHFSGGIPKEYGSFENLEVLDLRENDLSGQIPPELSNGLSLKHLLLSGNKF 154          
BLAST of CX671292 vs. ExPASy Swiss-Prot
Match: LRRC1_MOUSE (Leucine-rich repeat-containing protein 1 OS=Mus musculus GN=Lrrc1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.718e-11
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 3
Query:  393 TLPDDISACQNLQHLDLSQNLLTGTLTPALADLPNLKFLDLTGNNFSGDIPESFGRFQKLEVISLVYNLLDGTIPAFLGNISTLKMLNLSYNPFLPGRIPPELGNLTNLEILWLTECNLVGEIPDSLGRLAKLVDLDL 806
            +LP++I    NL  L+L +NLLT  L  +L  L  L+ LDL GNN   ++PES G    L+ + L  N L   +P  +GN+  L  L++S N     R+P E+  LT+L  L +++ NL+  IP+ +G+L KL  L L
Sbjct:  142 SLPENIGNLYNLASLELRENLLT-YLPDSLTQLRRLEELDL-GNNEIYNLPESIGALLHLKDLWLDGNQL-SELPQEIGNLKNLLCLDVSENRL--ERLPEEISGLTSLTYLVISQ-NLLETIPEGIGKLKKLSILKL 273          
BLAST of CX671292 vs. ExPASy Swiss-Prot
Match: LRRC1_HUMAN (Leucine-rich repeat-containing protein 1 OS=Homo sapiens GN=LRRC1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.718e-11
Identity = 52/133 (39.10%), Postives = 77/133 (57.89%), Query Frame = 3
Query:  393 TLPDDISACQNLQHLDLSQNLLTGTLTPALADLPNLKFLDLTGNNFSGDIPESFGRFQKLEVISLVYNLLDGTIPAFLGNISTLKMLNLSYNPFLPGRIPPELGNLTNLEILWLTECNLVGEIPDSLGRLAKL 791
            +LP++I    NL  L+L +NLLT  L  +L  L  L+ LDL GNN   ++PES G    L+ + L  N L   +P  +GN+  L  L++S N     R+P E+  LT+L  L +++ NL+  IPD +G+L KL
Sbjct:  142 SLPENIGNLYNLASLELRENLLT-YLPDSLTQLRRLEELDL-GNNEIYNLPESIGALLHLKDLWLDGNQL-SELPQEIGNLKNLLCLDVSENRL--ERLPEEISGLTSLTDLVISQ-NLLETIPDGIGKLKKL 268          
BLAST of CX671292 vs. ExPASy Swiss-Prot
Match: RLK90_ARATH (Probable inactive receptor kinase RLK902 OS=Arabidopsis thaliana GN=RLK902 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 49/160 (30.63%), Postives = 73/160 (45.62%), Query Frame = 3
Query:  225 RDDSPCSWRGVECDPRSHSVASIDLSNANIAGPFPS-LLCRLEXXXXXXXXXXSINSTLPDDISACQNLQHLDLSQNLLTGTLTPALADLPNLKFLDLTGNNFSGDIPESFGRFQKLEVISLVYNLLDGTIPAFLGNISTLKMLNLSYNPFLPGRIPPEL 701
            +  SPC+W GV CD     V ++ L    ++G  P  +   L            +  +LP D+ +C +L+ L L  N  +G +   L  L NL  L+L  N FSG+I   F    +L+ + L  N L G++   L    +L   N+S N  L G IP  L
Sbjct:   55 KQTSPCNWTGVLCD--GGRVTALRLPGETLSGHIPEGIFGNLTQLRTLSLRLNGLTGSLPLDLGSCSDLRRLYLQGNRFSGEIPEVLFSLSNLVRLNLAENEFSGEISSGFKNLTRLKTLYLENNKLSGSL---LDLDLSLDQFNVS-NNLLNGSIPKSL 208          
BLAST of CX671292 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.342e-11
Identity = 50/163 (30.67%), Postives = 75/163 (46.01%), Query Frame = 3
Query:  219 NPRDDSPCSWRGVEC-DPRSHSVASIDLSNANIAGPFPSLLCRLEXXXXXXXXXXSINSTLPDDISACQNLQHLDLSQNLLTGTLTPALAD-LPNLKFLDLTGNNFSGDIPESFGRFQKLEVISLVYNLLDGTIPAFLGNISTLKMLNLSYNPFLPGRIPPEL 701
            N    S C   GV C + + + + S+ L +  +AG                         +P+ +  C++LQ LDLS N L+G++   +   LP L  LDL+GN   G IP      + L  + L  N L G+IP+ L  +  L+ L+L+ N  L G IP EL
Sbjct:   52 NSSASSICKLTGVSCWNEKENRIISLQLQSMQLAGE------------------------IPESLKLCRSLQSLDLSGNDLSGSIPSQICSWLPYLVTLDLSGNKLGGSIPTQIVECKFLNALILSDNKLSGSIPSQLSRLDRLRRLSLAGND-LSGTIPSEL 189          
The following BLAST results are available for this feature:
BLAST of CX671292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
Y5457_ARATH7.492e-1230.11Probable LRR receptor-like serine/threonine-protei... [more]
Y4374_ARATH7.492e-1230.17Probable inactive receptor kinase At4g23740 OS=Ara... [more]
Y1561_ARATH7.492e-1227.43Probable LRR receptor-like serine/threonine-protei... [more]
SRF6_ARATH2.847e-1128.95Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
PGIP1_ORYSJ3.718e-1129.59Polygalacturonase inhibitor 1 OS=Oryza sativa subs... [more]
MRH1_ARATH3.718e-1149.40Probable LRR receptor-like serine/threonine-protei... [more]
LRRC1_MOUSE3.718e-1138.41Leucine-rich repeat-containing protein 1 OS=Mus mu... [more]
LRRC1_HUMAN3.718e-1139.10Leucine-rich repeat-containing protein 1 OS=Homo s... [more]
RLK90_ARATH4.856e-1130.63Probable inactive receptor kinase RLK902 OS=Arabid... [more]
Y1719_ARATH6.342e-1130.67Probable inactive receptor kinase At1g27190 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_10B09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10B09-C18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671292 ID=CX671292; Name=CX671292; organism=Citrus sinensis; type=EST; length=812bp
CTCACTACTTGTGTGTTTGGCAGTGTCTGCAACAACAAAGCTCTCTCTGC
AACAACAAAGCTTGGGTAACAATGGAACTTCTTACTGGGATGCTAGTATT
AGTTGCCTTCCTTTTGTCTCCGCTCCCTTCTCTTTCGCTCAACCAAGAAG
GGCTCTACCTCGAGCGCGTCAAACTGAGCCTCTCAGACCCAGATTCAGCA
CTCTCCTCTTGGGGCAGGAACCCGCGGGATGACAGCCCCTGTTCATGGCG
CGGCGTCGAGTGCGACCCACGCTCTCACTCCGTCGCCTCTATCGACCTCT
CAAACGCCAACATTGCCGGCCCTTTCCCTTCCCTCCTCTGCCGACTTGAA
AACCTCACCTTCCTCACTCTCTTCAACAACTCCATCAACTCCACCCTCCC
CGACGACATCTCCGCCTGTCAGAATCTCCAACACCTCGACCTCTCCCAGA
ACTTACTCACCGGTACACTCACTCCGGCCTTAGCTGACCTCCCCAATCTG
AAGTTTCTCGATTTAACGGGAAACAATTTCTCCGGAGATATTCCGGAGAG
TTTCGGCCGGTTTCAGAAGCTTGAAGTCATCTCTCTGGTCTACAATCTTC
TCGACGGGACAATTCCCGCATTTCTAGGAAACATTAGTACGCTCAAGATG
TTGAACTTGTCTTACAACCCGTTTCTGCCAGGTCGGATCCCGCCGGAGCT
TGGCAATTTGACGAACCTCGAGATACTCTGGCTCACTGAGTGTAACCTGG
TCGGTGAGATTCCTGACTCCCTCGGCAGACTCGCTAAGCTCGTTGATTTG
GACCTGGCGCTC
back to top