CX671289

Overview
NameCX671289
Unique NameCX671289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_CUPTR (Serine hydroxymethyltransferase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.043e-33
Identity = 76/193 (39.38%), Postives = 110/193 (56.99%), Query Frame = -2 
Query:  312 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 887
            ++E+ IN ++FPG+QGGP  H I G AVA K+A TPE+KAYQ+QV+ N +  A+TL+  G  +VSG TE+H++LV+L+ K I G   E++L   H+  NKN +P D     V  GIR+G+PA+T+RGF EE+                   +   G  + D +     A   + IA +R  V    K+FP  G
Sbjct:  245 EHEKAINSSIFPGIQGGPLMHVIAGKAVAFKEALTPEFKAYQQQVVKNAAVLAETLIARGLRIVSGRTESHVMLVDLRAKNITGKEAERILGEAHLTVNKNAIPNDPEKPFVTSGIRVGSPAMTTRGFKEEE-------------------ARIVGNLIADVLDNPHDA---ANIAAVREQVSALTKRFPVYG 415
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_RALEH (Serine hydroxymethyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.779e-33
Identity = 76/193 (39.38%), Postives = 108/193 (55.96%), Query Frame = -2 
Query:  312 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 887
            ++E+ IN A+FPG+QGGP  H I G AVA K+A TPE+K YQ+QV+ N +  A+TL+  G  +VSG TE+H++LV+L+ K I G   E++L   HI  NKN +P D     V  GIR+G+PA+T+RGF EE+                   +   G  + D +     A   + IA +R       K+FP  G
Sbjct:  245 EHEKAINSAIFPGIQGGPLMHVIAGKAVAFKEALTPEFKEYQQQVVKNAAVLAETLIARGLRIVSGRTESHVMLVDLRAKNITGKEAERILGEAHITVNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKEEE-------------------ARIVGNLIADVLDNPHDA---ANIASVREQAAALTKRFPVYG 415
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_POLSQ (Serine hydroxymethyltransferase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.779e-33
Identity = 78/193 (40.41%), Postives = 106/193 (54.92%), Query Frame = -2 
Query:  312 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 887
            ++E+ IN AVFPGLQGGP  H I G A A K+A  P +K YQ+QV++N    A+TL+  G  +VSGGT++H++LV+L+ K + G   E VL   HI  NKN +P D    MV  GIR+G+PA+T+RGF E +  +V  F                            + N    IAK+R  V E  K+FP  G
Sbjct:  244 EHEKAINSAVFPGLQGGPLMHVIAGKAAAFKEAAEPGFKDYQKQVVANAKALAETLIARGLRIVSGGTDSHVMLVDLRAKKMTGKEAEHVLGEAHITCNKNGIPNDPEKPMVTSGIRLGSPAMTTRGFKEAEAVQVGNF----------------------IADVLDNPNDPENIAKVRAQVAELTKRFPVYG 414
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_POLSJ (Serine hydroxymethyltransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.779e-33
Identity = 68/132 (51.52%), Postives = 93/132 (70.45%), Query Frame = -2 
Query:  495 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 887
            ++E+ IN A+FPGLQGGP  H I   AVA K+A +PE+K YQ+QVL+N    A+TL + G  +VSG TE+HL+LV+L+ KGI G   E VL + H+  NKN +P D    MV  G+R+GTPA+T+RGF +E+
Sbjct:  244 EHEKAINSAIFPGLQGGPLMHVIAAKAVAFKEALSPEFKTYQQQVLTNARIVAETLTQRGLRIVSGRTESHLMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFKDEE 375
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBM (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.779e-33
Identity = 65/144 (45.14%), Postives = 98/144 (68.06%), Query Frame = -2 
Query:  456 YEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 884
            Y + +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  244 YAKAVDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBK (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Okra / Type B1) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.779e-33
Identity = 65/144 (45.14%), Postives = 98/144 (68.06%), Query Frame = -2 
Query:  456 YEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 884
            Y + +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  244 YAKAVDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBJ (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.779e-33
Identity = 65/144 (45.14%), Postives = 98/144 (68.06%), Query Frame = -2 
Query:  456 YEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 884
            Y + +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  244 YAKAVDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBH (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.779e-33
Identity = 65/144 (45.14%), Postives = 98/144 (68.06%), Query Frame = -2 
Query:  456 YEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 884
            Y + +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  244 YAKAVDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB6 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.779e-33
Identity = 65/144 (45.14%), Postives = 98/144 (68.06%), Query Frame = -2 
Query:  456 YEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 884
            Y + +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  244 YAKAVDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB1 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.779e-33
Identity = 65/144 (45.14%), Postives = 98/144 (68.06%), Query Frame = -2 
Query:  456 YEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 884
            Y + +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  244 YAKAVDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387
The following BLAST results are available for this feature:
BLAST of CX671289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CUPTR3.043e-3339.38Serine hydroxymethyltransferase OS=Cupriavidus tai... [more]
GLYA_RALEH6.779e-3339.38Serine hydroxymethyltransferase OS=Ralstonia eutro... [more]
GLYA_POLSQ6.779e-3340.41Serine hydroxymethyltransferase OS=Polynucleobacte... [more]
GLYA_POLSJ6.779e-3351.52Serine hydroxymethyltransferase OS=Polaromonas sp.... [more]
GLYA_CLOBM6.779e-3345.14Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBK6.779e-3345.14Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBJ6.779e-3345.14Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBH6.779e-3345.14Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOB66.779e-3345.14Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOB16.779e-3345.14Serine hydroxymethyltransferase OS=Clostridium bot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10B08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10B08-C16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671289 ID=CX671289; Name=CX671289; organism=Citrus sinensis; type=EST; length=888bp
TTTTTTTTTTTTTAGGTGAAAAAAGATATCGCTTCTAGTTTTATTGCAGG
TTTATTTGCTTCCTGAAAGCCTCAGTAAATACAGAGTACTTTATATACAT
TAATTGTGATCTAAATCAAGGTTTGCTGTATATTGTATTCATAAAAGCGC
CAAATCACAGGGTCGATAGTTGATACATGGCTCATCATCGTAAGTTACAT
TTCATCCCTCGTCGCCTCTGTGTAATAAAAGCTCATACAGGCTGGCTTCC
GCTACTCTAGTACAGTGGCGTTTTTCTCTCAGTTCTTGTACTTCATGGTT
TCCTTTTCAAACCCAATTGTGGGGAATTGCTTTGCATACTCCTCAACATC
ATGGCGAAGTTTCGCAATCTCGGATTGGAAGTTAGCGGACTGTGTTGTGG
CCACGAAATCTTTCAACTTTGTTCCTTGAGTTTCAGACTTGATCTTCACA
GCCAACTTCACAGCAGCATCAAAGAAATATGCTACCTTGGCAAAATCCTC
CTCAACAAATCCCCTAGAAGTAAGAGCCGGAGTTCCCATCCTGATGCCAC
CTGGAACCATGGCCGACACATCCCCAGGAACAGTGTTTTTGTTGGCTGCA
ATATGAACAGCTTCCAACACTTTTTCAACTCTGGAACCATCAATTCCCTT
GTTTTTCAAATTCACCAACACTAGATGGTTCTCAGTTCCACCAGAAACAA
GTTCATAGCCCATCTCGAGCAGAGTCTGTGCAAATTTTGAGCAATTGCTC
AGAACTTGCTCTTGATAGGCTTTATACTCTGGAGTAGTGGCCTGTTTCAA
GGCAACTGCTAAACCAGTAATTGTGTGGTTGTGTGGGCCACCTTGGAGTC
CAGGAAAGACAGCTTGATTTATTTTTTCTTCATAATCA
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