CX671289

Overview
NameCX671289
Unique NameCX671289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_DESHD (Serine hydroxymethyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.510e-32
Identity = 71/164 (43.29%), Postives = 106/164 (64.63%), Query Frame = -2 
Query:  399 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA 887
            ++ + I++A+FPG+QGGP  H I   AVA  +A  PE+  YQ++++ N    ++TL E G+ +VSGGT+NHL+LV++++KG+ G   E +L+ V I  NKNT+P D  S MV  GIR+GTPA+TSRG       K+A    AA+ +A+   +E    K +D VA
Sbjct:  245 EFAKAIDKAIFPGIQGGPLMHVIAAKAVAFGEALKPEFVEYQKRIVENAKVLSETLAEKGFRIVSGGTDNHLMLVDVRSKGLTGKEAEYILDEVGITVNKNTIPYDPASPMVTSGIRIGTPAVTSRGMDTLAMKKIA----AAIDIALSEPNEAGAAKARDMVA 404
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK5 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.510e-32
Identity = 68/144 (47.22%), Postives = 97/144 (67.36%), Query Frame = -2 
Query:  456 YEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 884
            Y   +++ +FPG+QGGP  H I   AV   +A   EYK Y +Q++ N   F + L++ G+ LVSGGT+NHL+LV+L NK I G  +E++L+ V+I  NKN +P D +   V  GIR+GTPA+T+RGF EE+  KVAYF + AV+
Sbjct:  244 YGAALDKTIFPGIQGGPLMHIIAAKAVCFGEALKDEYKEYIDQIIKNAKVFGEELVKYGFRLVSGGTDNHLLLVDLTNKNITGKDLEELLDKVNITVNKNAIPFDKLKPNVTSGIRVGTPAVTTRGFKEEEMKKVAYFINKAVE 387
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK1 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain NBRC 12016) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.510e-32
Identity = 68/144 (47.22%), Postives = 97/144 (67.36%), Query Frame = -2 
Query:  456 YEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 884
            Y   +++ +FPG+QGGP  H I   AV   +A   EYK Y +Q++ N   F + L++ G+ LVSGGT+NHL+LV+L NK I G  +E++L+ V+I  NKN +P D +   V  GIR+GTPA+T+RGF EE+  KVAYF + AV+
Sbjct:  244 YGAALDKTIFPGIQGGPLMHIIAAKAVCFGEALKDEYKEYIDQIIKNAKVFGEELVKYGFRLVSGGTDNHLLLVDLTNKNITGKDLEELLDKVNITVNKNAIPFDKLKPNVTSGIRVGTPAVTTRGFKEEEMKKVAYFINKAVE 387
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_VARPS (Serine hydroxymethyltransferase OS=Variovorax paradoxus (strain S110) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.972e-32
Identity = 68/131 (51.91%), Postives = 91/131 (69.47%), Query Frame = -2 
Query:  495 YEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 884
            +E+ IN A+FPGLQGGP  H I   AVA K+A +PE+KAYQ+QV+ N    A TL E G  +VSG TE+H++LV+L+ KGI G   E VL + H+  NKN +P D    MV  G+R+GTPA+T+RGF +E+
Sbjct:  245 HEKAINSAIFPGLQGGPLMHVIAAKAVAFKEAMSPEFKAYQQQVVKNAQIVADTLTERGLRIVSGRTESHVMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFRDEE 375
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_METTP (Serine hydroxymethyltransferase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.972e-32
Identity = 68/134 (50.75%), Postives = 94/134 (70.15%), Query Frame = -2 
Query:  480 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 878
            + I++AVFPG+QGGP  HTI   AVA K+A TPE++ YQEQ++ N +  A  L+E G++LVSGGT+NHL+LV L  +GI G   ++ LE+  IA NKN +P D  +  V  GIR+GTPA+TSRG  E +  ++A
Sbjct:  244 QAIDRAVFPGIQGGPMMHTIAAKAVAFKEAMTPEFRRYQEQIVRNAAALADRLIENGFDLVSGGTDNHLMLVKLLKEGITGKEADETLESAGIALNKNMIPFDPRTPFVTSGIRIGTPAVTSRGMKENEMREIA 377
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_COXBU (Serine hydroxymethyltransferase OS=Coxiella burnetii GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.972e-32
Identity = 67/139 (48.20%), Postives = 94/139 (67.63%), Query Frame = -2 
Query:  474 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 887
            + E+++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  246 ELEKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_COXBR (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.972e-32
Identity = 67/139 (48.20%), Postives = 94/139 (67.63%), Query Frame = -2 
Query:  474 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 887
            + E+++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  246 ELEKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_COXBN (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.972e-32
Identity = 67/139 (48.20%), Postives = 94/139 (67.63%), Query Frame = -2 
Query:  474 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 887
            + E+++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  246 ELEKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_COXB1 (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain CbuK_Q154) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.972e-32
Identity = 67/139 (48.20%), Postives = 94/139 (67.63%), Query Frame = -2 
Query:  474 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 887
            + E+++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  246 ELEKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384
[Close]
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYA_POLNS (Serine hydroxymethyltransferase OS=Polynucleobacter necessarius (strain STIR1) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.576e-32
Identity = 77/190 (40.53%), Postives = 107/190 (56.32%), Query Frame = -2 
Query:  321 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 887
            ++E+ IN AVFPGLQGGP  H I   AVA K+A  P +K YQ+QV++N    A+TL+  G  +VSGGT++H++LV+L+ K + G   E+VL   HI  NKN +P D    MV  GIR+G+PA+T+RGF E +  +V  F                            + N  + IAK+R  V E  K+FP
Sbjct:  244 EHEKAINFAVFPGLQGGPLMHVIAAKAVAFKEAAEPGFKDYQKQVVANAKALAETLIARGLRIVSGGTDSHVMLVDLRAKSMTGKEAERVLGEAHITCNKNGIPNDPEKPMVTSGIRLGSPAMTTRGFKEAEARQVGNF----------------------IADVLDNPNDPANIAKVRAQVAELTKRFP 411
The following BLAST results are available for this feature:
BLAST of CX671289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_DESHD1.510e-3243.29Serine hydroxymethyltransferase OS=Desulfitobacter... [more]
GLYA_CLOK51.510e-3247.22Serine hydroxymethyltransferase OS=Clostridium klu... [more]
GLYA_CLOK11.510e-3247.22Serine hydroxymethyltransferase OS=Clostridium klu... [more]
GLYA_VARPS1.972e-3251.91Serine hydroxymethyltransferase OS=Variovorax para... [more]
GLYA_METTP1.972e-3250.75Serine hydroxymethyltransferase OS=Methanosaeta th... [more]
GLYA_COXBU1.972e-3248.20Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_COXBR1.972e-3248.20Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_COXBN1.972e-3248.20Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_COXB11.972e-3248.20Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_POLNS2.576e-3240.53Serine hydroxymethyltransferase OS=Polynucleobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10B08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10B08-C16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671289 ID=CX671289; Name=CX671289; organism=Citrus sinensis; type=EST; length=888bp
TTTTTTTTTTTTTAGGTGAAAAAAGATATCGCTTCTAGTTTTATTGCAGG
TTTATTTGCTTCCTGAAAGCCTCAGTAAATACAGAGTACTTTATATACAT
TAATTGTGATCTAAATCAAGGTTTGCTGTATATTGTATTCATAAAAGCGC
CAAATCACAGGGTCGATAGTTGATACATGGCTCATCATCGTAAGTTACAT
TTCATCCCTCGTCGCCTCTGTGTAATAAAAGCTCATACAGGCTGGCTTCC
GCTACTCTAGTACAGTGGCGTTTTTCTCTCAGTTCTTGTACTTCATGGTT
TCCTTTTCAAACCCAATTGTGGGGAATTGCTTTGCATACTCCTCAACATC
ATGGCGAAGTTTCGCAATCTCGGATTGGAAGTTAGCGGACTGTGTTGTGG
CCACGAAATCTTTCAACTTTGTTCCTTGAGTTTCAGACTTGATCTTCACA
GCCAACTTCACAGCAGCATCAAAGAAATATGCTACCTTGGCAAAATCCTC
CTCAACAAATCCCCTAGAAGTAAGAGCCGGAGTTCCCATCCTGATGCCAC
CTGGAACCATGGCCGACACATCCCCAGGAACAGTGTTTTTGTTGGCTGCA
ATATGAACAGCTTCCAACACTTTTTCAACTCTGGAACCATCAATTCCCTT
GTTTTTCAAATTCACCAACACTAGATGGTTCTCAGTTCCACCAGAAACAA
GTTCATAGCCCATCTCGAGCAGAGTCTGTGCAAATTTTGAGCAATTGCTC
AGAACTTGCTCTTGATAGGCTTTATACTCTGGAGTAGTGGCCTGTTTCAA
GGCAACTGCTAAACCAGTAATTGTGTGGTTGTGTGGGCCACCTTGGAGTC
CAGGAAAGACAGCTTGATTTATTTTTTCTTCATAATCA
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