CX671270

Overview
NameCX671270
Unique NameCX671270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4172 contig Csv1_Contig4172:88..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671270 vs. ExPASy Swiss-Prot
Match: DNJ20_CAEBR (DnaJ homolog dnj-20 OS=Caenorhabditis briggsae GN=dnj-20 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.700e-11
Identity = 37/99 (37.37%), Postives = 56/99 (56.57%), Query Frame = -3 
Query:  456 LKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGQYKAINDEGMPHHQRPFMKGRLYIQFNVEFPECGILSPDQCRTLE 752
            L E  +F+RK DDLY + T+SL +AL GF+  + HLDG   ++K    ++  PG      DEGMP  +    KG L + F+VEFP+  +    + + +E
Sbjct:  271 LLEGIRFERKGDDLYTNVTISLQDALNGFEMEILHLDGH--MVKVQRDKVTWPGARLRKKDEGMPSMENNNKKGMLIVTFDVEFPKTELTDEQKAQIIE 367
[Close]
BLAST of CX671270 vs. ExPASy Swiss-Prot
Match: DJB13_MOUSE (DnaJ homolog subfamily B member 13 OS=Mus musculus GN=Dnajb13 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.700e-11
Identity = 40/117 (34.19%), Postives = 66/117 (56.41%), Query Frame = -3 
Query:  447 EAPDTITGDXVFILQLKEHPKFKRKFDDLYVDHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEIIKPGQYKAINDEGMPHHQRPFMKGRLYIQFNVEFPECGILSPDQCRTLESVL 797
            + P+ I  D +FI++ K HP+F+R+ D+L+  + + L +AL      +  LD R L I  N  +I+ P  +K +  EGMP  + P  KG L+I F+++FP    L+P + + L   L
Sbjct:  202 QGPNIIPADIIFIVKEKLHPRFRREHDNLFFVYPIPLGKALTCCTVEVKTLDDRLLNIPIN--DIVHPKYFKIVPGEGMPLPENPSKKGDLFIFFDIQFPT--RLTPQKKQMLRQAL 314
The following BLAST results are available for this feature:
BLAST of CX671270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
DNJ20_CAEBR4.700e-1137.37DnaJ homolog dnj-20 OS=Caenorhabditis briggsae GN=... [more]
DJB13_MOUSE4.700e-1134.19DnaJ homolog subfamily B member 13 OS=Mus musculus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_10A07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10A07-A14-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671270 ID=CX671270; Name=CX671270; organism=Citrus sinensis; type=EST; length=799bp
GCAACAAGCATCTGAATTTATCCAATACATCAAAAAATCCAATTTAAATG
ACATAAGCATCTGATCCGCTGCTGCATATACATATGCATATGTGTGTGTA
TATAAATACTATCCACCTTCTGCCTGGTAAATAACTGCTACTGCTTGCTT
ATAATATTAATTAGCACAAAAATCATGCAGCGGTAAAAAAAACATACTAG
ATGCCAAATTGAAAATGCTCATTGCCTCTGATAGGCAAGGGGACCAGGAA
AGGCAAAATTGAATTTGCCTCATTGCTGAGCACACTGGACTCTTGGCATT
GCTGGTTCATCATCTTCATCATATGCCTCTTGCTGCTGTTGATACCGTTT
ACGCCTCATCTCTTCATCAATGTTAACATCATGCATGGTGACCTCCTCAC
AATCATCCAGCTCCATGTCAGACAGGTTCTTGCCTGGCCTCGGAGGTAGT
ACACTCTCTAAAGTCCGGCACTGATCAGGAGAAAGGATTCCACATTCCGG
AAATTCTACATTGAATTGAATGTAAAGCCTGCCTTTCATAAAGGGCCTTT
GGTGATGCGGCATTCCCTCATCGTTGATTGCTTTGTATTGACCAGGCTTA
ATGATCTCCCCAGGATTTGATTTGATCAGTAGCTGCCTCCCATCAAGATG
GGTTAAGGCAAACTGAAACCCACACAGAGCCTCAGTCAAACTGAGGGTGT
GATCAACATAAAGATCATCGAACTTCCGCTTAAACTTGGGATGCTCCTTC
AATTGCAATATGAAGACNATGTCTCCTGTGATGGTATCAGGAGCTTCAT
back to top