CX043360

Overview
NameCX043360
Unique NameCX043360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043360 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.333e-40
Identity = 79/119 (66.39%), Postives = 96/119 (80.67%), Query Frame = 1
Query:    1 LQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLAA 357
            ++ AMGT+D IIDT+SA H ++PLLGLLK  GKLV VG P KPLEL V  L+ GRK + GS+ GGMKETQEM+DF  KHNITADIE+I M  +NTAMERL KADV+YRFVID+AN+ ++
Sbjct:  240 MKAAMGTMDYIIDTISAAHSLMPLLGLLKLNGKLVTVGLPSKPLELSVFPLVAGRKLIGGSNIGGMKETQEMLDFCGKHNITADIELIKMHEINTAMERLHKADVKYRFVIDVANSFSS 358          
BLAST of CX043360 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.258e-39
Identity = 75/120 (62.50%), Postives = 99/120 (82.50%), Query Frame = 1
Query:    1 LQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLAAT 360
            ++ A GT+D IIDT+SAVH ++ LLGLLK  GKLV VG P KPL+LP+  L+ GRK + GS+ GG+KETQEM+DF  KHNI A+IE+I MD +NTA+ERL+KADV+YRFVID+AN+L+++
Sbjct:  233 MKAATGTMDYIIDTISAVHSLVSLLGLLKLNGKLVTVGLPSKPLQLPIFPLVAGRKLIGGSNFGGLKETQEMLDFCGKHNIAANIELIKMDEINTAIERLSKADVKYRFVIDVANSLSSS 352          
BLAST of CX043360 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.056e-38
Identity = 75/117 (64.10%), Postives = 96/117 (82.05%), Query Frame = 1
Query:    1 LQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 351
            ++ A+GT+D IIDTVSA H +LPL  LLK  GKLV +G P+KPL+LP+ SL++GRK V GS  GGMKETQEM++F AKH I +DIE+I M  +N+AM+RLAK+DVRYRFVID+AN+L
Sbjct:  237 MKEAVGTMDFIIDTVSAEHALLPLFSLLKVNGKLVALGLPEKPLDLPIFSLVLGRKMVGGSQIGGMKETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLAKSDVRYRFVIDVANSL 353          
BLAST of CX043360 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 6.918e-38
Identity = 79/117 (67.52%), Postives = 94/117 (80.34%), Query Frame = 1
Query:    1 LQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 351
            +  A GT+DGII+TVSA  PI PLLGLLK  GK++LVG P+KP+E+P  +L+   KT++GS  GGM +T EMID AAKH +TA+IEVI  DYVNTAMERLAKADVRYRFVIDI NTL
Sbjct:  234 MNAATGTMDGIINTVSANIPIAPLLGLLKPNGKMILVGLPEKPMEIPPFALVASNKTLAGSCIGGMADT-EMIDLAAKHGVTAEIEVIGADYVNTAMERLAKADVRYRFVIDIGNTL 349          
BLAST of CX043360 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.484e-37
Identity = 75/119 (63.03%), Postives = 94/119 (78.99%), Query Frame = 1
Query:    1 LQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLAA 357
            ++ A  T+DG+I+TVSA  P+ P L LLK  GK++LVG P+ PLE+P  SL+ G +T++GS+ GGM +TQEMI+ AAKH +TADIEVI  D VNTAMERLAKADVRYRFVID+ NTL A
Sbjct:  244 MEAARSTMDGVINTVSANTPMAPYLALLKPNGKMILVGLPENPLEVPPFSLVHGNRTLAGSNIGGMADTQEMIELAAKHGVTADIEVIGADDVNTAMERLAKADVRYRFVIDVGNTLHA 362          
BLAST of CX043360 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.475e-36
Identity = 72/117 (61.54%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    1 LQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 351
            ++ A+GT+D IIDTVSA H +LPL  LLK  GKLV +G  +KPL+LP+  L++GRK V GS  GGMKETQEM++F AKH I +DIE+I M  +N+AM+RL K+DVRYRFVID+AN+L
Sbjct:  236 MKEAVGTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLLEKPLDLPIFPLVLGRKMVGGSQIGGMKETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLVKSDVRYRFVIDVANSL 352          
BLAST of CX043360 vs. ExPASy Swiss-Prot
Match: CADH9_ORYSJ (Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CAD9 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.641e-34
Identity = 69/121 (57.02%), Postives = 94/121 (77.69%), Query Frame = 1
Query:    1 LQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLAATK 363
            ++ A GT+DGIIDTVSAVH + PL+ LL++ G+LV VG+P KP++L +  L    K+V+GS  GGM++TQEM+DFA +H + A++EVI M+ VN AMERL K DVRYRFVID+ANT+A  +
Sbjct:  242 MKAAAGTMDGIIDTVSAVHDLTPLITLLRTHGQLVPVGSPGKPVQLALYPLQSDGKSVAGSMIGGMRDTQEMVDFAVEHGVAAEVEVIGMEDVNGAMERLQKGDVRYRFVIDVANTMARAR 362          
BLAST of CX043360 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.034e-33
Identity = 70/113 (61.95%), Postives = 88/113 (77.88%), Query Frame = 1
Query:    1 LQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDI 339
            +Q    +LD IIDTV+A H + P+L LLK  GKLVLVGAP+KP+ELP   LI G++TVSGS TGGMKETQEM+D   +HNIT DIE++S D +N A+ RLA+ DVRYRFVI++
Sbjct:  242 MQAMTRSLDYIIDTVAATHSLGPILELLKVNGKLVLVGAPEKPVELPSFPLIFGKRTVSGSMTGGMKETQEMMDICGEHNITCDIEIVSTDRINDALARLARNDVRYRFVINV 354          
BLAST of CX043360 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.034e-33
Identity = 65/116 (56.03%), Postives = 89/116 (76.72%), Query Frame = 1
Query:    1 LQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 348
            +  A GT+DGI++TVSA HP+ PL  L+K   ++V VGAP +PLELP  +++ G K ++G+  GG+++ Q M+DFA +H ITA++EVI MDYVNTAMERL K DVRYRFVID+A +
Sbjct:  311 MAAAAGTMDGILNTVSAWHPVAPLFALMKPMAQMVFVGAPTRPLELPAYAIVPGGKGITGNCVGGIRDCQAMLDFAGEHGITAEVEVIKMDYVNTAMERLEKNDVRYRFVIDVAGS 426          
BLAST of CX043360 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.929e-33
Identity = 69/117 (58.97%), Postives = 89/117 (76.07%), Query Frame = 1
Query:    1 LQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 351
            ++ AMGT+ GII+T SA   +   L LLK +GK++LVG P+KPL++P  +L+ G K ++GS  G + ETQEMIDFAA+H + ADIE+I  D VNTAMERLAK DVRYRFV+DI NTL
Sbjct:  260 MKAAMGTMHGIINTASASTSMHSYLALLKPKGKMILVGLPEKPLQIPTFALVGGGKILAGSCMGSISETQEMIDFAAEHGVAADIELIGADEVNTAMERLAKGDVRYRFVVDIGNTL 376          
The following BLAST results are available for this feature:
BLAST of CX043360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
MTDH_MEDSA4.333e-4066.39Probable mannitol dehydrogenase OS=Medicago sativa... [more]
MTDH1_STYHU6.258e-3962.50Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
CADH2_ARATH4.056e-3864.10Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
CADH5_ORYSJ6.918e-3867.52Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CADH3_ORYSJ4.484e-3763.03Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
CADH3_ARATH6.475e-3661.54Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
CADH9_ORYSJ4.641e-3457.02Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... [more]
CADH6_ORYSJ1.034e-3361.95Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]
CAD8B_ORYSJ1.034e-3356.03Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]
CADH7_ORYSJ3.929e-3358.97Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10E10_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10E10-J20-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043360 ID=CX043360; Name=CX043360; organism=Citrus sinensis; type=EST; length=644bp
TTGCAGGGTGCCATGGGCACATTGGATGGTATTATTGACACGGTGTCCGC
TGTGCACCCCATTTTGCCATTGCTCGGTCTATTAAAGTCCCAGGGCAAGC
TTGTTCTGGTTGGTGCTCCGGACAAGCCACTCGAGCTACCTGTGATTTCC
TTAATTATGGGGAGGAAGACGGTGTCAGGGAGCAGCACTGGGGGAATGAA
AGAGACGCAAGAGATGATTGATTTTGCAGCAAAACACAATATAACAGCTG
ACATTGAGGTTATTTCGATGGATTATGTCAATACGGCAATGGAGCGGCTC
GCCAAGGCTGATGTTCGGTATCGATTTGTCATTGATATTGCAAACACCTT
GGCCGCCACCAAACCTTGAAGAATCAGAATCAGAATCAGATTGGTGTCTT
CAATTCACAACTTTGTTCCATGATCCACTTTGCTATATGTAATGCTCCCT
CGATCATTACACTCTTTTAGCGCTTAAATTACTTTTAATTTCCAGTTACA
TCACCCTAATTATGTCGTGATTGCCAAAAAACTATAAATGTTAATGAAAT
AAAACATTGTTCATATAAAATATTTAGCATATGTACCTTTCACCAATTGT
CCAGTTGAAAAGTTTGTTTTGTTCTAAATCAAAAAAAAAAAAAA
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