DY305706

Overview
NameDY305706
Unique NameDY305706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.842e-23
Identity = 55/121 (45.45%), Postives = 74/121 (61.16%), Query Frame = 2
Query:  143 VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPF 505
            +  Q +K  K+   D+V+ DT+GRL  +  +M+EL    K V K +N  P E+LLV+D  TG         FN  +GITG ILTKLDG +RGG  +SV +  G P+K VG GE +EDL+PF
Sbjct:  246 IAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDEL----KDVKKFLN--PTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPF 360          

HSP 2 Score: 28.8758 bits (63), Expect = 4.842e-23
Identity = 13/30 (43.33%), Postives = 18/30 (60.00%), Query Frame = 1
Query:   10 LMAAGDTFRAAASDQLEIWAERTGCEIVVA 99
            ++ AGD +R AA DQL I  E+ G  +  A
Sbjct:  208 MLIAGDVYRPAAIDQLVILGEQVGVPVYTA 237          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_THEAC (Signal recognition 54 kDa protein OS=Thermoplasma acidophilum GN=srp54 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.571e-22
Identity = 51/127 (40.16%), Postives = 84/127 (66.14%), Query Frame = 2
Query:  158 VKRGKEQGFDIV--LCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532
            +K G EQ  D+   + DTSGR   +  L +E+   K+AV      AP+E+L+++D T G    P+A+ FND +G+TG+I+TK+DG+A+GG  +S V E+ +P+ F+G GE ++DL+ FD + F++ +
Sbjct:  168 IKHGLEQLKDVAVKIIDTSGRDSMDAELFDEIRRIKEAV------APDEVLMIIDATMGQQAGPEAKAFNDAIGVTGIIITKMDGTAKGGGALSAVAEIHVPIYFIGTGEHMDDLEVFDPKKFLSRL 288          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_THEON (Signal recognition 54 kDa protein OS=Thermococcus onnurineus (strain NA1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22
Identity = 52/127 (40.94%), Postives = 80/127 (62.99%), Query Frame = 2
Query:  152 QAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532
            + V+  +E+G DI++ D++GR     SL+EE+     A+       P+E++LV+DGT G     QA  F +   I  +I+TKLDGSA+GG  +S V   G P+KF+GVGE ++DL+PFD + FV+ +
Sbjct:  173 EGVEHFREKGVDIIIVDSAGRHKEEKSLIEEMKQISAAI------KPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGVGERIDDLEPFDPKRFVSRL 293          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_THEGJ (Signal recognition 54 kDa protein OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=srp54 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.121e-21
Identity = 51/127 (40.16%), Postives = 80/127 (62.99%), Query Frame = 2
Query:  152 QAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532
            + V+  K++G D+++ DT+GR      L+EE+    +A+       P+E++LV+DGT G     QA  F +   I  +I+TKLDGSA+GG  +S V   G P+KF+GVGE ++DL+PFD + FV+ +
Sbjct:  173 EGVEYFKDKGVDVIIVDTAGRHKEESGLIEEMKQISEAI------KPHEVILVIDGTIGQQAYHQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGVGEKIDDLEPFDPKRFVSRL 293          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_SYNY3 (Signal recognition particle protein OS=Synechocystis sp. (strain PCC 6803) GN=ffh PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.464e-21
Identity = 58/132 (43.94%), Postives = 76/132 (57.58%), Query Frame = 2
Query:  143 VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 538
            +  Q V++ KE G D VL DT+GRL  +  +M EL   K+ V       P++ LLV+D  TG         F++ +GITG ILTKLDG  RGG  +SV    G P+KFVGVGE VE LQPF  +   + I +
Sbjct:  170 IARQGVEKAKELGVDTVLIDTAGRLQIDPQMMAELAEIKQVV------KPDDTLLVVDAMTGQEAANLTHTFHEQIGITGAILTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPFYPDRLASRILN 295          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: DOCK_SULAC (Probable signal recognition particle protein OS=Sulfolobus acidocaldarius GN=dpa PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.494e-21
Identity = 54/132 (40.91%), Postives = 78/132 (59.09%), Query Frame = 2
Query:  143 VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFS 538
            V   A+   K +  D+VL DT+GR+H +  L+EEL    K V ++    P+  +L+LD   G + L QAR F + VG   +ILTK+D  A+GG  +S+  EL  PV ++GVG+  +DL PF  + FV  IFS
Sbjct:  243 VAFDAISFAKSRNIDVVLIDTAGRMHIDSDLVEEL----KRVLRIAK--PDFRILILDSLAGSDALEQARHFENNVGYDAVILTKVDADAKGGIALSLAYELKKPVVYMGVGQNYDDLIPFSPDWFVERIFS 368          

HSP 2 Score: 30.0314 bits (66), Expect = 1.494e-21
Identity = 13/29 (44.83%), Postives = 20/29 (68.97%), Query Frame = 1
Query:    7 TLMAAGDTFRAAASDQLEIWAERTGCEIV 93
            T++AA DTFRAAA +QL   A +   +++
Sbjct:  204 TIIAASDTFRAAAQEQLAYHASKLEVQLI 232          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_PYRKO (Signal recognition 54 kDa protein OS=Pyrococcus kodakaraensis GN=srp54 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.563e-21
Identity = 49/127 (38.58%), Postives = 79/127 (62.20%), Query Frame = 2
Query:  152 QAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532
            + V+  +E+G D+++ D++GR      L+EE+    +A+       P+E++LV+DGT G     QA  F +   I  +I+TKLDGSA+GG  +S V   G P+KF+G GE ++DL+PFD + FV+ +
Sbjct:  173 EGVEHFREKGVDVIIVDSAGRHKEEKGLIEEMRQISEAI------KPHEVILVIDGTIGQQAYNQAMAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGERIDDLEPFDPKRFVSRL 293          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_MYCMY (Signal recognition particle protein OS=Mycoplasma mycoides GN=ffh PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.265e-21
Identity = 52/118 (44.07%), Postives = 75/118 (63.56%), Query Frame = 2
Query:  152 QAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPF 505
            QA++  KE  FD+V+ DT+GRL  +  LM+EL   KK        +PNEILLV+DG +G  ++    EFND + ++G+++TKLDG ARGG  +S+     +P+KF+G GEG   L  F
Sbjct:  174 QALEYAKENNFDVVILDTAGRLQVDQVLMKELDNLKKKT------SPNEILLVVDGMSGQEIINVTNEFNDKLKLSGVVVTKLDGDARGGATLSISYLTKLPIKFIGEGEGYNALAAF 285          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_METJA (Signal recognition 54 kDa protein OS=Methanocaldococcus jannaschii GN=srp54 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.265e-21
Identity = 55/128 (42.97%), Postives = 84/128 (65.62%), Query Frame = 2
Query:  158 VKRGKEQ--GFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITG-LILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532
            VK G E+    D+++ DT+GR      L+EE+    K + ++ N  P+EI+LV+DGT G     QA+ F + VG  G +I+TKLDGSA+GG  +S V E   P+KF+G+GEG++DL+PFD + F++ +
Sbjct:  172 VKEGMEKFKKADVLIIDTAGRHKEEKGLLEEM----KQIKEITN--PDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRL 293          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_PYRFU (Signal recognition 54 kDa protein OS=Pyrococcus furiosus GN=srp54 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.489e-21
Identity = 50/121 (41.32%), Postives = 78/121 (64.46%), Query Frame = 2
Query:  170 KEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532
            K +G DI++ DT+GR   + +L+EE+    K +  V++  P+E++LV+DGT G     QA  F +   I  +I+TKLDGSA+GG  +S V   G P+KF+G GE ++D++PFD   FV+ +
Sbjct:  179 KSKGVDIIIVDTAGRHKEDKALIEEM----KQISNVIH--PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRL 293          
The following BLAST results are available for this feature:
BLAST of DY305706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
SR54C_ARATH4.842e-2345.45Signal recognition particle 54 kDa protein, chloro... [more]
SRP54_THEAC6.571e-2240.16Signal recognition 54 kDa protein OS=Thermoplasma ... [more]
SRP54_THEON8.582e-2240.94Signal recognition 54 kDa protein OS=Thermococcus ... [more]
SRP54_THEGJ1.121e-2140.16Signal recognition 54 kDa protein OS=Thermococcus ... [more]
SRP54_SYNY31.464e-2143.94Signal recognition particle protein OS=Synechocyst... [more]
DOCK_SULAC1.494e-2140.91Probable signal recognition particle protein OS=Su... [more]
SRP54_PYRKO5.563e-2138.58Signal recognition 54 kDa protein OS=Pyrococcus ko... [more]
SRP54_MYCMY7.265e-2144.07Signal recognition particle protein OS=Mycoplasma ... [more]
SRP54_METJA7.265e-2142.97Signal recognition 54 kDa protein OS=Methanocaldoc... [more]
SRP54_PYRFU9.489e-2141.32Signal recognition 54 kDa protein OS=Pyrococcus fu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2AB01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305706 ID=DY305706; Name=DY305706; organism=Citrus sinensis; type=EST; length=724bp
GGCCAGACACTGATGGCAGCAGGTGACACTTTTAGAGCAGCCGCTAGTGA
TCAACTGGAAATATGGGCAGAGAGGACTGGTTGTGAGATTGTTGTGGCTG
AAGGAGAGAAGGCCAAAGCATCATCAGAGTGCTTCCTGAATAGTTCTTTC
ACAGGCTGTGAAAAGAGGGAAAGAACAGGGTTTTGATATTGTTTTGTGTG
ACACATCTGGACGTCTCCACACAAACTACAGCCTGATGGAAGAGTTGGTT
GCATGCAAGAAAGCTGTGGGCAAAGTTGTTAACGGTGCACCTAATGAGAT
CCTACTAGTTCTGGATGGGACTACTGGCTTGAATATGCTTCCACAAGCAA
GAGAATTTAATGATGTTGTCGGAATAACTGGTTTAATTTTGACAAAGCTG
GATGGTTCTGCTAGAGGTGGCTGTGTGGTCAGTGTCGTCGATGAGCTTGG
CATTCCTGTAAAGTTTGTGGGTGTTGGTGAAGGTGTGGAGGACCTACAAC
CCTTCGATGCAGAGGCCTTTGTTAATGCCATATTTTCATGAGAACTGAAA
GTGATTCATTGTTCAATCAAACTATTAGTTTTTTGGCGAAATAGGATGGC
TAAAGGCTGAGCAGTTAACTCTATTAAAAAGTGCAAGACCATTTATGAGG
ACATGGATGCAGCATTAATGGGATTGCAAGTATGAGAAGAGTTTATTTAT
AAGAATAAATTCTTACCAGTTAGT
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