DY305706

Overview
NameDY305706
Unique NameDY305706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_MYCBO (Signal recognition particle protein OS=Mycobacterium bovis GN=ffh PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  143 VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532
            V +  +   + + FD+V+ DT+GRL  +  LM +  A + A+       P+E+L VLD   G + +  A  F + VG TG+ LTKLDG ARGG  +SV +  G+P+ F   GE +ED   F  +   + I
Sbjct:  177 VAAAGLAEARAKHFDVVIVDTAGRLGIDEELMAQAAAIRDAIN------PDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRI 300          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_METKA (Signal recognition 54 kDa protein OS=Methanopyrus kandleri GN=srp54 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 46/113 (40.71%), Postives = 70/113 (61.95%), Query Frame = 2
Query:  185 DIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 523
            D+V+ DT+GR   +  L++EL    + +       P+E+LLVLD T G      A  F++ V +TG+++TKLD +A+GG  +S V   G P+KFVG GE V+DL+ F+  +FV
Sbjct:  183 DVVIVDTAGRDRLSEDLIDELREMAERI------EPHEVLLVLDATVGQKAGDHAEAFHEAVQLTGVVITKLDTAAKGGGALSAVARTGAPIKFVGTGERVDDLEEFNPRSFV 289          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_ENTHI (Signal recognition particle 54 kDa protein OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 47/130 (36.15%), Postives = 75/130 (57.69%), Query Frame = 2
Query:  143 VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532
            V S+ V+  +++  DI+L DTSGR   +  L +E+ + + A+       P+ I+ V+DG  G     QA+ F D V +  +I+TKLDG + GG  +S V     P+ F+G GE V +++ FDAE+FV  +
Sbjct:  171 VASEGVRTFRKEKNDIILVDTSGRHKQDKELFKEMQSVRDAI------KPDSIIFVMDGAIGQAAFGQAKAFKDAVEVGSVIITKLDGHSNGGGALSAVAATKSPIIFIGTGEKVNEIEEFDAESFVRQL 294          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_MYCLE (Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16
Identity = 47/130 (36.15%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  143 VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532
            V S  +   + + FD+V+ DT+GRL  +  LM +  A ++A+       P+E+L VLD   G + +  A  F   VG TG++LTKLDG ARGG  +SV +  G+P+ F   GE ++D   F  +   + I
Sbjct:  177 VASAGLVEARAKHFDVVIVDTAGRLGIDDELMAQAGAIREAIN------PDEVLFVLDAMIGQDAVTTAAAFGAGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFATTGEKLDDFDVFHPDRMASRI 300          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_METBU (Signal recognition 54 kDa protein OS=Methanococcoides burtonii (strain DSM 6242) GN=srp54 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16
Identity = 45/116 (38.79%), Postives = 74/116 (63.79%), Query Frame = 2
Query:  185 DIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532
            D+++ DT+GR    +SL  +L+   + + ++    P+  LLVLDG  G     QAR FND VGI+G++++KLDG+A+GG  +S V E    + F+GVGE  +DL+ F+ + F++ +
Sbjct:  179 DVLIVDTAGR----HSLEADLIDEMEQIHEIAQ--PDYKLLVLDGAIGQQASEQARAFNDSVGISGVVISKLDGTAKGGGALSAVSETNSAIAFIGVGETPDDLEKFEPDRFISRL 288          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_HALWD (Signal recognition 54 kDa protein OS=Haloquadratum walsbyi (strain DSM 16790) GN=srp54 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16
Identity = 45/116 (38.79%), Postives = 70/116 (60.34%), Query Frame = 2
Query:  185 DIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532
            DI + DT+GR      L++E+ A    V      AP+  LLVLD   G     QAREFN+ +GI G+++TKLDG+A+GG  ++ V+E    + F+G GE V+D++ F+   F++ +
Sbjct:  179 DIHIVDTAGRHALEADLIDEIEAIDSTV------APDRSLLVLDAAIGQGAKQQAREFNNAIGIDGVVVTKLDGTAKGGGALTAVNETDSSIAFLGTGETVQDVERFEPNGFISRL 288          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_RICPR (Signal recognition particle protein OS=Rickettsia prowazekii GN=ffh PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.418e-16
Identity = 45/130 (34.62%), Postives = 78/130 (60.00%), Query Frame = 2
Query:  143 VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532
            ++ +A+   +   +D+V+ DT+GR+  +  +MEE +A KK +       P E LLV+D  TG + +  A+ F++ + I+GLIL+++DG  +GG  +SV      P+KF+  GE + DL+ F+AE   + I
Sbjct:  172 IVKRAIGEAQISAYDVVIYDTAGRIQIDNVMMEEALAIKKILN------PTETLLVIDSMTGQDAVITAKTFSEKLEISGLILSRIDGDTKGGAALSVKYFTQKPIKFLSSGEKLTDLEEFNAERLASRI 295          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_YARLI (Signal recognition particle 54 kDa protein homolog OS=Yarrowia lipolytica GN=SRP54 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.549e-16
Identity = 45/130 (34.62%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  143 VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532
            V ++ V + K++ F+I++ DTSGR      L  E+V    AV       P+  ++VLD + G    PQ+R F D      +ILTK+DG A+GG  +S V     P+ F+G GE + DL+ F  + F++ +
Sbjct:  173 VAAEGVAKFKKEKFEIIIVDTSGRHRQESELFTEMVDIGAAV------KPDSTIMVLDASIGQAAEPQSRAFKDASDFGSIILTKMDGHAKGGGAISAVAATNTPIIFIGTGEHIHDLEAFSPKQFISKL 296          

HSP 2 Score: 22.3274 bits (46), Expect = 1.549e-16
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 1
Query:   13 MAAGDTFRAAASDQLE 60
            +   DTFRA A DQL+
Sbjct:  136 LVCADTFRAGAFDQLK 151          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAR (Signal recognition 54 kDa protein OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=srp54 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-16
Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 2
Query:  176 QGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 523
            +G D+++ DT+GR     +L++E+    KA+   VN  P+E++LV+D T G     QA  F   + I  +I+TK+D +ARGG  ++ V + G  VKF+GVGE VE+L+PF+   FV
Sbjct:  178 KGVDVLIIDTAGRHRNEEALLQEV----KAIYDAVN--PDEVVLVVDATVGKLAAAQAEAFMKYLPIHTVIITKMDSTARGGGALAAVAKTGARVKFIGVGEDVEELEPFNPRKFV 287          
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_BUCAI (Signal recognition particle protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ffh PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16
Identity = 48/139 (34.53%), Postives = 78/139 (56.12%), Query Frame = 2
Query:  116 KHHQSAS*IVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532
            KHH      +   A+K  K + +D++L DT+GRLH +  +M E+   +  + K +     E LL++D   G + +  A+ FN+ + I+G+ILTK DG +R G  +S+    G P+KF+G GE +  L+PF  E   + I
Sbjct:  164 KHHTPIE--ITKNAIKYAKLKLYDVLLIDTAGRLHIDKKMMNEIQQIQ-VISKAI-----ETLLIVDSMMGQDAINMAKIFNNDLLISGIILTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADRI 294          
The following BLAST results are available for this feature:
BLAST of DY305706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
SRP54_MYCBO2.857e-1736.15Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_METKA2.857e-1740.71Signal recognition 54 kDa protein OS=Methanopyrus ... [more]
SRP54_ENTHI3.731e-1736.15Signal recognition particle 54 kDa protein OS=Enta... [more]
SRP54_MYCLE1.086e-1636.15Signal recognition particle protein OS=Mycobacteri... [more]
SRP54_METBU1.086e-1638.79Signal recognition 54 kDa protein OS=Methanococcoi... [more]
SRP54_HALWD1.086e-1638.79Signal recognition 54 kDa protein OS=Haloquadratum... [more]
SRP54_RICPR1.418e-1634.62Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_YARLI1.549e-1634.62Signal recognition particle 54 kDa protein homolog... [more]
SRP54_PYRAR1.852e-1640.52Signal recognition 54 kDa protein OS=Pyrobaculum a... [more]
SRP54_BUCAI4.125e-1634.53Signal recognition particle protein OS=Buchnera ap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2AB01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305706 ID=DY305706; Name=DY305706; organism=Citrus sinensis; type=EST; length=724bp
GGCCAGACACTGATGGCAGCAGGTGACACTTTTAGAGCAGCCGCTAGTGA
TCAACTGGAAATATGGGCAGAGAGGACTGGTTGTGAGATTGTTGTGGCTG
AAGGAGAGAAGGCCAAAGCATCATCAGAGTGCTTCCTGAATAGTTCTTTC
ACAGGCTGTGAAAAGAGGGAAAGAACAGGGTTTTGATATTGTTTTGTGTG
ACACATCTGGACGTCTCCACACAAACTACAGCCTGATGGAAGAGTTGGTT
GCATGCAAGAAAGCTGTGGGCAAAGTTGTTAACGGTGCACCTAATGAGAT
CCTACTAGTTCTGGATGGGACTACTGGCTTGAATATGCTTCCACAAGCAA
GAGAATTTAATGATGTTGTCGGAATAACTGGTTTAATTTTGACAAAGCTG
GATGGTTCTGCTAGAGGTGGCTGTGTGGTCAGTGTCGTCGATGAGCTTGG
CATTCCTGTAAAGTTTGTGGGTGTTGGTGAAGGTGTGGAGGACCTACAAC
CCTTCGATGCAGAGGCCTTTGTTAATGCCATATTTTCATGAGAACTGAAA
GTGATTCATTGTTCAATCAAACTATTAGTTTTTTGGCGAAATAGGATGGC
TAAAGGCTGAGCAGTTAACTCTATTAAAAAGTGCAAGACCATTTATGAGG
ACATGGATGCAGCATTAATGGGATTGCAAGTATGAGAAGAGTTTATTTAT
AAGAATAAATTCTTACCAGTTAGT
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