DY305706
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_MYCBO (Signal recognition particle protein OS=Mycobacterium bovis GN=ffh PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17 Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 2 Query: 143 VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532 V + + + + FD+V+ DT+GRL + LM + A + A+ P+E+L VLD G + + A F + VG TG+ LTKLDG ARGG +SV + G+P+ F GE +ED F + + I Sbjct: 177 VAAAGLAEARAKHFDVVIVDTAGRLGIDEELMAQAAAIRDAIN------PDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRI 300
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_METKA (Signal recognition 54 kDa protein OS=Methanopyrus kandleri GN=srp54 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17 Identity = 46/113 (40.71%), Postives = 70/113 (61.95%), Query Frame = 2 Query: 185 DIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 523 D+V+ DT+GR + L++EL + + P+E+LLVLD T G A F++ V +TG+++TKLD +A+GG +S V G P+KFVG GE V+DL+ F+ +FV Sbjct: 183 DVVIVDTAGRDRLSEDLIDELREMAERI------EPHEVLLVLDATVGQKAGDHAEAFHEAVQLTGVVITKLDTAAKGGGALSAVARTGAPIKFVGTGERVDDLEEFNPRSFV 289
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_ENTHI (Signal recognition particle 54 kDa protein OS=Entamoeba histolytica PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17 Identity = 47/130 (36.15%), Postives = 75/130 (57.69%), Query Frame = 2 Query: 143 VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532 V S+ V+ +++ DI+L DTSGR + L +E+ + + A+ P+ I+ V+DG G QA+ F D V + +I+TKLDG + GG +S V P+ F+G GE V +++ FDAE+FV + Sbjct: 171 VASEGVRTFRKEKNDIILVDTSGRHKQDKELFKEMQSVRDAI------KPDSIIFVMDGAIGQAAFGQAKAFKDAVEVGSVIITKLDGHSNGGGALSAVAATKSPIIFIGTGEKVNEIEEFDAESFVRQL 294
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_MYCLE (Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16 Identity = 47/130 (36.15%), Postives = 72/130 (55.38%), Query Frame = 2 Query: 143 VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532 V S + + + FD+V+ DT+GRL + LM + A ++A+ P+E+L VLD G + + A F VG TG++LTKLDG ARGG +SV + G+P+ F GE ++D F + + I Sbjct: 177 VASAGLVEARAKHFDVVIVDTAGRLGIDDELMAQAGAIREAIN------PDEVLFVLDAMIGQDAVTTAAAFGAGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFATTGEKLDDFDVFHPDRMASRI 300
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_METBU (Signal recognition 54 kDa protein OS=Methanococcoides burtonii (strain DSM 6242) GN=srp54 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16 Identity = 45/116 (38.79%), Postives = 74/116 (63.79%), Query Frame = 2 Query: 185 DIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532 D+++ DT+GR +SL +L+ + + ++ P+ LLVLDG G QAR FND VGI+G++++KLDG+A+GG +S V E + F+GVGE +DL+ F+ + F++ + Sbjct: 179 DVLIVDTAGR----HSLEADLIDEMEQIHEIAQ--PDYKLLVLDGAIGQQASEQARAFNDSVGISGVVISKLDGTAKGGGALSAVSETNSAIAFIGVGETPDDLEKFEPDRFISRL 288
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_HALWD (Signal recognition 54 kDa protein OS=Haloquadratum walsbyi (strain DSM 16790) GN=srp54 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16 Identity = 45/116 (38.79%), Postives = 70/116 (60.34%), Query Frame = 2 Query: 185 DIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532 DI + DT+GR L++E+ A V AP+ LLVLD G QAREFN+ +GI G+++TKLDG+A+GG ++ V+E + F+G GE V+D++ F+ F++ + Sbjct: 179 DIHIVDTAGRHALEADLIDEIEAIDSTV------APDRSLLVLDAAIGQGAKQQAREFNNAIGIDGVVVTKLDGTAKGGGALTAVNETDSSIAFLGTGETVQDVERFEPNGFISRL 288
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_RICPR (Signal recognition particle protein OS=Rickettsia prowazekii GN=ffh PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.418e-16 Identity = 45/130 (34.62%), Postives = 78/130 (60.00%), Query Frame = 2 Query: 143 VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532 ++ +A+ + +D+V+ DT+GR+ + +MEE +A KK + P E LLV+D TG + + A+ F++ + I+GLIL+++DG +GG +SV P+KF+ GE + DL+ F+AE + I Sbjct: 172 IVKRAIGEAQISAYDVVIYDTAGRIQIDNVMMEEALAIKKILN------PTETLLVIDSMTGQDAVITAKTFSEKLEISGLILSRIDGDTKGGAALSVKYFTQKPIKFLSSGEKLTDLEEFNAERLASRI 295
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_YARLI (Signal recognition particle 54 kDa protein homolog OS=Yarrowia lipolytica GN=SRP54 PE=3 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 1.549e-16 Identity = 45/130 (34.62%), Postives = 71/130 (54.62%), Query Frame = 2 Query: 143 VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532 V ++ V + K++ F+I++ DTSGR L E+V AV P+ ++VLD + G PQ+R F D +ILTK+DG A+GG +S V P+ F+G GE + DL+ F + F++ + Sbjct: 173 VAAEGVAKFKKEKFEIIIVDTSGRHRQESELFTEMVDIGAAV------KPDSTIMVLDASIGQAAEPQSRAFKDASDFGSIILTKMDGHAKGGGAISAVAATNTPIIFIGTGEHIHDLEAFSPKQFISKL 296 HSP 2 Score: 22.3274 bits (46), Expect = 1.549e-16 Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 1 Query: 13 MAAGDTFRAAASDQLE 60 + DTFRA A DQL+ Sbjct: 136 LVCADTFRAGAFDQLK 151
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAR (Signal recognition 54 kDa protein OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=srp54 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-16 Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 2 Query: 176 QGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFV 523 +G D+++ DT+GR +L++E+ KA+ VN P+E++LV+D T G QA F + I +I+TK+D +ARGG ++ V + G VKF+GVGE VE+L+PF+ FV Sbjct: 178 KGVDVLIIDTAGRHRNEEALLQEV----KAIYDAVN--PDEVVLVVDATVGKLAAAQAEAFMKYLPIHTVIITKMDSTARGGGALAAVAKTGARVKFIGVGEDVEELEPFNPRKFV 287
BLAST of DY305706 vs. ExPASy Swiss-Prot
Match: SRP54_BUCAI (Signal recognition particle protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ffh PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16 Identity = 48/139 (34.53%), Postives = 78/139 (56.12%), Query Frame = 2 Query: 116 KHHQSAS*IVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELVACKKAVGKVVNGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 532 KHH + A+K K + +D++L DT+GRLH + +M E+ + + K + E LL++D G + + A+ FN+ + I+G+ILTK DG +R G +S+ G P+KF+G GE + L+PF E + I Sbjct: 164 KHHTPIE--ITKNAIKYAKLKLYDVLLIDTAGRLHIDKKMMNEIQQIQ-VISKAI-----ETLLIVDSMMGQDAINMAKIFNNDLLISGIILTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADRI 294 The following BLAST results are available for this feature:
BLAST of DY305706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 132
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Sequences
The
following sequences are available for this feature:
EST sequence >DY305706 ID=DY305706; Name=DY305706; organism=Citrus sinensis; type=EST; length=724bpback to top |