CV713027

Overview
NameCV713027
Unique NameCV713027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_RICTY (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia typhi GN=pdhA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.104e-14
Identity = 46/172 (26.74%), Postives = 89/172 (51.74%), Query Frame = -2
Query:  243 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVY 758
            ++G  + A N +++   PV++I  NN +++ T +S          KG ++G+R  ++DG D   +Y+      E       P+++E  TYR   H+ SD + KYR  +E+  ++  +D + R R+ I  N +   +    +  SV++ I  A++ +E +  P   +L+TD+Y
Sbjct:  156 NQGQVYEAFNMASLWGLPVVYIIENNEYSMGTSVSRSTFMRDLYKKGESFGIRGFQLDGMDFEEMYNGTKQVAEYVRENSFPVILEVKTYRYRGHSMSDPA-KYRSKEEVAKYK-ERDTLVRIRQIILDNKYATEEDLKAIERSVQEVIKVAVEFSENSPLPSEDELYTDIY 325          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPAT_MOUSE (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Mus musculus GN=Pdha2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.104e-14
Identity = 52/176 (29.55%), Postives = 83/176 (47.16%), Query Frame = -2
Query:  231 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSP 758
            ++G    A N SA+ + P +FIC NN + + T       S     KG  + +  +RV+G D L +  A   A +       PI++E  TYR   H+ SD    YR  +E+   R+  DP+   R+ I SN   N +   E+ + V+K++  A Q A    +P + D+   +Y   P
Sbjct:  201 NQGQVFEAYNMSALWKLPCVFICENNLYGMGTSNERSAASTDYHKKG--FIIPGLRVNGMDILCVREATKFAADHCRSGKGPIVMELQTYRYHGHSMSDPGISYRSREEVHNVRSKSDPIMLLRERIISNNLSNIEELKEIDADVKKEVEDAAQFATTDPEPAVEDIANYLYHQDP 374          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_SMIMA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial (Fragment) OS=Sminthopsis macroura GN=PDHA PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.442e-14
Identity = 52/176 (29.55%), Postives = 81/176 (46.02%), Query Frame = -2
Query:  231 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSP 758
            ++G    A N +A+ + P IFIC NN + + T +     S     +G    +  I VDG D L +  A   A         P+L+E  TYR   H+ SD    YR  +EI+  R+  DP+   +  + +N   + +   E+   VRK+I  A Q A    +PP+ +L   +Y   P
Sbjct:  173 NQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGIMVDGMDVLCVREATKFAAAYCRSGKGPMLMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNNNLASIEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSRDP 346          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_PIG (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (Fragment) OS=Sus scrofa GN=PDHA1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.883e-14
Identity = 51/176 (28.98%), Postives = 82/176 (46.59%), Query Frame = -2
Query:  231 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSP 758
            ++G    A N +A+ + P +FIC NN + + T +     S     +G    +  +RVDG D L +  A   A         PIL+E  TYR   H+ SD    YR  +EI+  R+  DP+   +  + ++   + +   E+   VRK+I  A Q A    +PP+ +L   +Y   P
Sbjct:  199 NQGQIFEAYNMAALWKLPCVFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYCNDP 372          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_KLULA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Kluyveromyces lactis GN=PDA1 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.883e-14
Identity = 49/174 (28.16%), Postives = 82/174 (47.13%), Query Frame = -2
Query:  243 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKP--PISDLFTDVY 758
            ++G    + N + +   P +F C NN + + T  +          +G+   +  ++V+G D LA+Y A   A++  +    PI++E  TYR G H+ SD  T YR  DEI+  R+  DP+   +  +   G    D       + RK +   ++ A+ A  P   +S LF DVY
Sbjct:  212 NQGQVFESFNMAKLWNLPAVFCCENNKYGMGTAAARSSAMTEYFKRGQY--IPGLKVNGMDILAVYQASKFAKDWTVSGNGPIVLEYETYRYGGHSMSDPGTTYRTRDEIQHMRSKNDPIAGLKMHLLELGIATEDEIKAYDKAARKYVDEQVELADAAPAPEAKMSILFEDVY 383          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_BOVIN (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Bos taurus GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.883e-14
Identity = 52/176 (29.55%), Postives = 82/176 (46.59%), Query Frame = -2
Query:  231 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSP 758
            ++G    A N +A+ + P IFIC NN + + T +     S     +G    +  +RVDG D L +  A   A         PIL+E  TYR   H+ SD    YR  +EI+  R+  DP+   +  + ++   + +   E+   VRK+I  A Q A    +PP+ +L   +Y   P
Sbjct:  200 NQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYCNDP 373          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_YEAST (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=PDA1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.460e-14
Identity = 50/174 (28.74%), Postives = 82/174 (47.13%), Query Frame = -2
Query:  243 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKP--PISDLFTDVY 758
            ++G    + N + +   PV+F C NN + + T  S          +G+   +  ++V+G D LA+Y A   A++  +    P+++E  TYR G H+ SD  T YR  DEI+  R+  DP+   +  +   G            S RK +   ++ A+ A  P   +S LF DVY
Sbjct:  220 NQGQVFESFNMAKLWNLPVVFCCENNKYGMGTAASRSSAMTEYFKRGQY--IPGLKVNGMDILAVYQASKFAKDWCLSGKGPLVLEYETYRYGGHSMSDPGTTYRTRDEIQHMRSKNDPIAGLKMHLIDLGIATEAEVKAYDKSARKYVDEQVELADAAPPPEAKLSILFEDVY 391          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_RICPR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia prowazekii GN=pdhA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.460e-14
Identity = 45/172 (26.16%), Postives = 89/172 (51.74%), Query Frame = -2
Query:  243 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVY 758
            ++G  + A N +++   P+++I  NN +++ T ++          KG ++G+R  ++DG D   +Y+      E       P+++E  TYR   H+ SD + KYR  +E+E ++  +D + R R+ I  N +        +  SVR+ I  A++ +E +  P   +L+T++Y
Sbjct:  156 NQGQVYEAFNMASLWGLPIVYIIENNEYSMGTSVARSTFMCDLYKKGESFGIRGFQLDGMDFEEMYNGTKQVAEYVRENSFPVILEVKTYRYRGHSMSDPA-KYRSKEEVEKYK-ERDTLVRIREIILDNKYATEADLKAIEQSVREIIKVAVEFSENSPLPAEDELYTEIY 325          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_PANTR (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Pan troglodytes GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.213e-14
Identity = 51/176 (28.98%), Postives = 81/176 (46.02%), Query Frame = -2
Query:  231 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSP 758
            ++G    A N +A+ + P IFIC NN + + T +     S     +G    +  +RVDG D L +  A   A         PIL+E  TYR   H+ S     YR  +EI+  R+  DP+   +  + ++   + +   E+   VRK+I  A Q A    +PP+ +L   +Y   P
Sbjct:  200 NQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSGPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDP 373          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPAT_HUMAN (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Homo sapiens GN=PDHA2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 49/177 (27.68%), Postives = 81/177 (45.76%), Query Frame = -2
Query:  228 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPS 758
            ++G    A N +A+ + P +FIC NN + + T       S     +G    +  ++VDG D L +  A   A         PIL+E  TYR   H+ SD    YR  +EI+  R+ +DP+   +  + ++     +   E+ + VRK+I  A Q A    +P + +L   +Y    S
Sbjct:  198 NQGQIAEAFNMAALWKLPCVFICENNLYGMGTSTERAAASPDYYKRGNF--IPGLKVDGMDVLCVREATKFAANYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKRDPIIILQDRMVNSKLATVEELKEIGAEVRKEIDDAAQFATTDPEPHLEELGHHIYSSDSS 372          
The following BLAST results are available for this feature:
BLAST of CV713027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ODPA_RICTY1.104e-1426.74Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPAT_MOUSE1.104e-1429.55Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_SMIMA1.442e-1429.55Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_PIG1.883e-1428.98Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_KLULA1.883e-1428.16Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_BOVIN1.883e-1429.55Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_YEAST2.460e-1428.74Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_RICPR2.460e-1426.16Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_PANTR3.213e-1428.98Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPAT_HUMAN1.763e-1227.68Pyruvate dehydrogenase E1 component subunit alpha,... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002D13_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002D13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713027 ID=CV713027; Name=CV713027; organism=Citrus sinensis; type=EST; length=759bp
ATCCCCCCGGGCTGCAGGTTTTTTTTATTGCTTTTAACTACACTTGATTT
ATTAAACCAAATGTACTCAAAGATCAAAAGTACAAATTTCACAGAGATAA
ATGTTTGCTATGTGCAGTTGCACTTAATCAGTAGACACTTACTAAACTAA
ATAGGAACATTTGAGGGATAGTCTTGTGGGTGCTTTTTGATGGTCTCTCT
TAATGAGTGCTCTTGCTCGCGGAGGTTAGAAGGAGAAACATCATATACAT
CGGTAAACAAGTCTGAAATTGGAGGTTTCTCTGCTTTTTCGGCTTCTTGA
AGTGCATGTAATATCTGCTTCCTCACACTGCTTCTGAGCTCTGACTCAAT
GTCACCATTCCACCAACCATTGCTTTCTATCCACTTTCTAAATCTCGTAA
CAGGGTCTTGAGTTGTTCTCCACCATTCAATCTCATCAACTGGGCGGTAC
TTAGTGGAATCATCTGATGTCGTGTGGTGTCCTACTCGATATGTAAGAGC
CTCAATTAAGATAGGTCTGCCCTCACCAATCGCCATTTCACGTGCAGCAT
GAACTGCACTATATATGGCAAGAGCATCGTTACCATCTACACGGATACTT
CGGACTCCATATGCCCGGCCTTTAACAACGGCACCATCACTTCGAAACTG
GTCAGAAATAGGGGTACTGATAGCCCATCCATTGTTCCTACAGATAAAAA
TAACTGGGGCCTCCGTAACTGCCGAAAAATTTAAAGCAGCATGGAAATCT
CCCTCACTT
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