CV712873

Overview
NameCV712873
Unique NameCV712873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: AB30G_ARATH (ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 7.466e-42
Identity = 89/228 (39.04%), Postives = 133/228 (58.33%), Query Frame = -1
Query:   46 QQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDV-QDRLESGE--TVKQFLRSYYGFKHDFLGXXXXXVFVLPSLFAFVFALGIRVLNFQKR 720
            QQDL +  G MY  V F G+ N ++V   +  ER+VFYRE+ A MYS  AY+F+QVLIE+PY  +Q+   ++IVY  IG+  +  K                  GM++VA TPN H+A  + + F+ + N+ +GF+IP+ +IP WW W Y+ +P +W L G  +SQ+GDV ++ L  GE   V  FL  Y+G+KH+ L      +   P + A +FA  +  L+FQK+
Sbjct: 1173 QQDLISIFGSMYTLVVFPGMNNCAAVINFIAAERNVFYRERFARMYSSWAYSFSQVLIEVPYSLLQSLLCTIIVYPTIGYHMSVYKMFWSLYSIFCSLLIFNYSGMLMVALTPNIHMAVTLRSSFFSMLNLFAGFVIPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVDKEILVFGEKKRVSAFLEDYFGYKHESLAVVAFVLIAYPIIVATLFAFFMSKLSFQKK 1400          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: ABCG2_DICDI (ABC transporter G family member 2 OS=Dictyostelium discoideum GN=abcG2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.419e-16
Identity = 47/182 (25.82%), Postives = 91/182 (50.00%), Query Frame = -1
Query:  181 QQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIG--FEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLESGETV 720
            Q++++N +  ++ ++ F G+  +SS+ P+V++ER VFYRE+ +GMYS   Y F  ++ ++P++F+ A  Y++ +Y + G   +   A                    M+     P   IA  +  +   + ++ +GF+IP   I   W W Y  +P  + L     ++F D++    S E+V
Sbjct: 1080 QENIYNRVSILFFSLMFGGMSGMSSI-PIVNMERGVFYREQASGMYSIPIYLFTFIVTDLPWVFLSAIIYTVPMYFISGLRLDPNGAPFFYHSFISFTTYFNFSMLAMVFATVLPTDEIAHALGGVALSISSLFAGFMIPPASIAKGWHWFYQLDPTTYPLAIVMINEFQDLEFHCTSSESV 1260          

HSP 2 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 43/180 (23.89%), Postives = 82/180 (45.56%), Query Frame = -1
Query:  181 QQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLESGETV 720
            Q D  N  G ++ ++ F+    + ++  + + +R VFY +K    Y   A+  + +  EIP   ++   + ++VY M G +  A K                 F  M+ A+ PN  +AS+++      + + SGF+ P+  I  WW W YW +PI +   G  +++   +    +  ET+
Sbjct:  419 QTDGNNRSGLIFFSLLFIVFSGMGAIAILFE-QREVFYIQKDGKYYKTFAFFLSLIFSEIPIALLETVVFCVLVYWMCGLQANAEKFIYFLLMNFVGDLAFQSFFKMVSAFAPNATLASVIAPAALAPFILFSGFMAPKRSIGGWWIWIYWISPIKYAFEGLMSNEHHGLIYSCDDSETI 597          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: ABCGI_DICDI (ABC transporter G family member 18 OS=Dictyostelium discoideum GN=abcG18 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.674e-15
Identity = 45/175 (25.71%), Postives = 91/175 (52.00%), Query Frame = -1
Query:  208 KQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWT---PNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQ 723
            +Q D+FN + F++ ++ F G+  +S + P V  ER VFYRE+ +GMY    Y    VL ++P++ + +  Y + VY + G    +                   FG+  +A+    P   +A +++ +   + ++ +GF+IP   +P  W+W+++ + I++ L  F  ++F D++
Sbjct: 1231 EQNDVFNRISFLFFSLMFGGMAGLSII-PTVSTERGVFYREQASGMYRVWIYYLTFVLSDLPFVIITSYAYVIPVYFLTGLS-LSNHGWDFFYHSFISVMLYLNFGLTSIAFATSLPVEEMAFLLNGVLLSVTSLFAGFMIPPPSMPAAWKWAFYLDFISYPLKAFLITEFKDME 1403          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: ABCGL_DICDI (ABC transporter G family member 21 OS=Dictyostelium discoideum GN=abcG21 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.861e-14
Identity = 41/167 (24.55%), Postives = 78/167 (46.71%), Query Frame = -1
Query:  211 LFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDV 711
            LF   G ++ A+ F   L+ + + P+    R +  +++   MY P A   AQ++ +IP   +Q   +S++VY M G ++ A K                    +   ++P+ +I+  V  +         G+ IP+ ++  W+ W YWANP ++      A++FGD+
Sbjct:  522 LFTRGGAIFSAILFNAFLSEAEL-PLTMYGRRILQKQRSYAMYRPSALHIAQIVTDIPLTMIQVFLFSIVVYFMFGLQYNAGKFFIFCFTLVGATLATTNLFRVFGNFSPSLYISQNVMNVILIFMITYCGYTIPKPKMHPWFAWFYWANPFSYAFKALMANEFGDL 687          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: ABCGJ_DICDI (ABC transporter G family member 19 OS=Dictyostelium discoideum GN=abcG19 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 41/167 (24.55%), Postives = 76/167 (45.51%), Query Frame = -1
Query:  211 LFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDV 711
            LF   G ++  + F  +L      P+   +R +  ++    MY P A   AQ++ +IP   +Q   +S++VY M G ++ A K                    M   ++P+ +I+  V  +F       +G+ IP+ ++  W+ W YW NP ++      A++FGD+
Sbjct:  522 LFTRGGTLFSVILFNALL-CECEMPLTFGQRGILQKQHSYAMYRPSALHIAQIVTDIPLTIIQVFLFSIVVYFMFGLQYDAGKFFIFCFTLVGATLATTNLFRMFGNFSPSLYISQNVMNIFIISMITYTGYTIPKPKMHPWFSWFYWCNPFSYAFKALMANEFGDL 687          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: ABCGG_DICDI (ABC transporter G family member 16 OS=Dictyostelium discoideum GN=abcG16 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 43/167 (25.75%), Postives = 80/167 (47.90%), Query Frame = -1
Query:  223 KQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQ 723
            K  +L  ++ F  +     G L  + V  V   ER VFY +K    Y  +AY FA ++ ++ + F+    +  I Y +IG   +A +                    M+  ++PN  IAS ++ L++ L+ +++G++I R  IP++WRW ++ +P  W      ++Q
Sbjct:  541 KSANLLPSLSFFLLTFVVFGSL--AGVGQVFS-ERPVFYDQKIGKYYKSIAYFFAGLVSDLIWNFIDVIIFCSISYWLIGLNHSADRFFFFLLAIYLLDCLVNRVSKMVSIYSPNAAIASTIAPLYFSLFLLMAGYLIHRNSIPIYWRWMHYISPFKWVFEAILSNQ 704          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: ABCGA_DICDI (ABC transporter G family member 10 OS=Dictyostelium discoideum GN=abcG10 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.052e-11
Identity = 41/167 (24.55%), Postives = 74/167 (44.31%), Query Frame = -1
Query:  211 LFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDV 711
            LFN  G +Y A+ F   ++   +  +    R +  ++    MY P A   A V+ +IP   +Q   +S+IVY M G +  A K                 F   L   +P+ +++  +  +F        G+ IP+ ++  W+ W +W NP ++      A++FGD+
Sbjct:  531 LFNRGGAIYAAILFNAFVSAGELG-LTFYGRRILQKQHSYAMYRPSALHIAMVITDIPLTAIQVTIFSVIVYFMYGLQVDAGKFFIFLFTIFGSTLSMVAFFRALGNLSPSLYVSQNILNVFILFMFTYGGYSIPKNKMHPWFSWYFWINPFSFPYKALMANEFGDM 696          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: ABCG6_DICDI (ABC transporter G family member 6 OS=Dictyostelium discoideum GN=abcG6 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 41/163 (25.15%), Postives = 69/163 (42.33%), Query Frame = -1
Query:  220 FNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQF 708
            F  + F+ V + F     V+S       ER VFY +K    Y   AY  + ++ +IP   ++ A +  IVY +        +                 F  M  A +P   IA++++++   +W + SGF  P+  I  WW W Y+ +P  W   G   ++F
Sbjct:  519 FGLLFFIMVTIIFSSFAAVNSFFG----ERKVFYSQKALYYYKTGAYFISSIICDIPAGILEVAFFGPIVYWLANLRPVFIRFVYFMLLLIMTDNLSLSFAKMCAAISPTIEIANVIASVILSIWLLFSGFTAPKNDIGGWWIWLYYISPYTWIFQGLSINEF 677          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: ABCGF_DICDI (ABC transporter G family member 15 OS=Dictyostelium discoideum GN=abcG15 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 43/180 (23.89%), Postives = 82/180 (45.56%), Query Frame = -1
Query:  187 FNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIA-SIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGD-----VQDRLESGE 708
            F   G ++ ++ F  +L+   +  +    R +  + K   MY P A  FAQ++ EIP I +Q   +S++ Y M G + + +K                    +    TP+ +I  +I++ LF  +    S +IIP  ++PVW+ W ++ NP ++       ++F       ++D +  GE
Sbjct:  542 FTRGGAIFSSILFNALLSEQELS-ITFTGRRILQKHKTYAMYRPAALHFAQIITEIPIIMIQVFLFSIVTYFMFGLDSSGSKFFINCFTLIGFTLATNNLYRLAGNLTPSVYIGQNIMNVLFLTMMTFTS-YIIPYHQMPVWFGWYHYCNPFSFAFRALMGNEFNGLKFDCIEDAIPKGE 719          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: ABCG5_DICDI (ABC transporter G family member 5 OS=Dictyostelium discoideum GN=abcG5 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 35/135 (25.93%), Postives = 58/135 (42.96%), Query Frame = -1
Query:  220 ERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQF 624
            ER VFY +K    Y   AY  + ++ +IP   ++ A +  IVY +        +                 F  M  A +P   IA++ +++   +W + SGF  P+  I  WW W Y+ +P  W   G   ++F
Sbjct:  534 ERKVFYSQKALHYYKTGAYFISSIICDIPAGLIEVAFFGPIVYWLANLRPVFIRFVYFMILLFITDNLSLSFAKMCAAISPTIEIANVTASVILSIWLLFSGFTAPKNDIGGWWIWLYYISPYTWIFQGLSINEF 668          
The following BLAST results are available for this feature:
BLAST of CV712873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
AB30G_ARATH7.466e-4239.04ABC transporter G family member 30 OS=Arabidopsis ... [more]
ABCG2_DICDI2.419e-1625.82ABC transporter G family member 2 OS=Dictyostelium... [more]
ABCGI_DICDI2.674e-1525.71ABC transporter G family member 18 OS=Dictyosteliu... [more]
ABCGL_DICDI3.861e-1424.55ABC transporter G family member 21 OS=Dictyosteliu... [more]
ABCGJ_DICDI5.043e-1424.55ABC transporter G family member 19 OS=Dictyosteliu... [more]
ABCGG_DICDI1.916e-1325.75ABC transporter G family member 16 OS=Dictyosteliu... [more]
ABCGA_DICDI1.052e-1124.55ABC transporter G family member 10 OS=Dictyosteliu... [more]
ABCG6_DICDI1.373e-1125.15ABC transporter G family member 6 OS=Dictyostelium... [more]
ABCGF_DICDI3.996e-1123.89ABC transporter G family member 15 OS=Dictyosteliu... [more]
ABCG5_DICDI3.996e-1125.93ABC transporter G family member 5 OS=Dictyostelium... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0002A06_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712873 ID=CV712873; Name=CV712873; organism=Citrus sinensis; type=EST; length=723bp
CTGATCCAACGTGCAATAGTTTATAGGAAAAAAAAAAATTTTCTATCGCT
TTTGGAAGTTAAGCACCCTAATTCCTAAAGCAAAGACAAAAGCAAAAAGC
GATGGCAATACAAAAACAACAGCTGCAACAGCTCCTAGAAAATCATGTTT
GAAGCCATAATAACTTCTCAAAAACTGTTTCACTGTTTCACCTGACTCAA
GCCTATCTTGTACATCTCCAAACTGTGATGCAAAAAATCCATACAATGTC
CAAGCTATAGGGTTTGCCCAGTAGGACCATCTCCACCATACAGGAATCCT
TGTTCTGGGGATAATGAACCCTGAAACGATGTTCCATAATCCGTAAAATA
AAGTTGATACAATGCTAGCAATGTGGTGGTTTGGCGTCCAAGCCACAAGC
ATCATGCCAAAGAATGTGAAGTACAACAAGCTGAAGAACATGAAGAATAA
AAACCAAAAGAATTTCGCGGCAGTCCATTCGAATCCAATCATTGCATAGA
CTATAAGACTATATGGTGCAGCTTGAACAAATATATAAGGGATCTCAATT
AAAACTTGTGCAAAGGCATATGCCATGGGTGAATACATTCCGGCACCTTT
TTCTCTGTAGAAGACTGATCTTTCAAGATCTACTACTGGCTGCACTGACG
AAACATTTAGGACACCAAGGAAGTAAACGGCAACATACATGAAGCCCATT
GTATTAAACAGATCTTGTTGCTT
back to top