CV712872

Overview
NameCV712872
Unique NameCV712872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DBP6_PICST (ATP-dependent RNA helicase DBP6 OS=Pichia stipitis GN=DBP6 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 41/128 (32.03%), Postives = 70/128 (54.69%), Query Frame = 2
Query:  365 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVW--------QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 724
            L W+ +P+  S  +  P      + P L   L+    ++ F VQ+A+         +  + P + + D+ +N+ TGSGKTL+Y++PI++ L NR V  +RA+V++PT+ L  QVK  F  ++    LS
Sbjct:  138 LDWLATPIYASPEDSKPFSEFE-ISPFLLKNLERDNFTTAFSVQIAIMDILLHDIKRNRLEPDV-KGDILVNAATGSGKTLAYSIPIIEALHNRVVPRVRAIVLVPTKPLINQVKATFVQLSRGTNLS 263          
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DBP6_ASPNC (ATP-dependent RNA helicase dbp6 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp6 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 45/119 (37.82%), Postives = 60/119 (50.42%), Query Frame = 2
Query:  368 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 721
            PW+ +P+  S  E      L  +D  L   L++ G    F VQ  V    + GP     DLCI++ TGSGKTLSY LP+V  L       LR L+V+PTR+L  Q ++     A   GL
Sbjct:  107 PWLANPLRASAQERRKFADLG-IDSSLLRVLEDNGYREAFAVQSTVIPLLLQGPTNHPGDLCISAATGSGKTLSYVLPLVTALKPLPAPRLRGLIVVPTRELVKQAREACELCAAGSGL 224          
The following BLAST results are available for this feature:
BLAST of CV712872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
DBP6_PICST2.343e-1132.03ATP-dependent RNA helicase DBP6 OS=Pichia stipitis... [more]
DBP6_ASPNC6.816e-1137.82ATP-dependent RNA helicase dbp6 OS=Aspergillus nig... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002A05_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712872 ID=CV712872; Name=CV712872; organism=Citrus sinensis; type=EST; length=725bp
GCATAACACTCAACAACTAACCACACACCATCTTAAACTCTTCTTCTCTT
ACTGGCCGCCACACACGAGTAGTCAGCCACCGCTCATCATCTTCTCTTAG
CATCATCGTCATCAGCCTGTTACGGACTCCTGTTCAGCGCCATCTCCTCT
CACGGCAGCTCACAACACGCTGCAGCCTGCAGTCCGTCAAGCTTCCGTCA
GCGCCATCTCTCACGGAAACTCACAACACGCTGCAGCCTGCAATCCGTCA
AGCTTCTCACGCCATCGCCGTCACTAGTATTGCCGAACTGCTGTCAAGGA
CTCAAGGGTTTAGATTTGTCGGAGAAGAATAATGGAGGAAGCAAAGAAGA
AGAGCGTGCCAGTCTTGCCGTGGATGCGAAGCCCGGTTGATGTCAGTCTC
TTTGAAGACTGTCCTCTTGATCACCTCCCTTGTCTTGACCCCAGGTTGAA
GGTGGCTTTGCAGAACATGGGTATCTCGTCACTCTTCCCAGTGCAAGTTG
CAGTTTGGCAAGAGACAATAGGCCCTGGTCTATTTGAACGAGACCTTTGC
ATCAATTCACCTACAGGAAGTGGGAAAACTTTGTCTTATGCTTTGCCAAT
AGTTCAAACATTGTCCAATCGTGCTGTTAGATGTCTACGTGCTTTGGTGG
TGCTGCCCACGCGTGATCTAGCTTTGCAGGTCAAGGATGTTTTCGCTGCG
ATTGCACCTGCAGTGGGTTTGTCTG
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