CV712871

Overview
NameCV712871
Unique NameCV712871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_KLULA (ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces lactis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12
Identity = 43/131 (32.82%), Postives = 72/131 (54.96%), Query Frame = -2
Query:  380 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGR 772
            L  F+ GK  +LV++D   RG+D+  V+ V+NYD P   K+YIHR GRTARAG+ G+  +L+ + +++   + ++       P  ++    I +LR     ++DK    V  E +R++    +    GKGR
Sbjct:  350 LDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR-IEDVLGKKLPKENVDKDAILALR----DSVDKANGEVVMELNRRNK---EKQARGKGR 472          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_COCIM (ATP-dependent RNA helicase DRS1 OS=Coccidioides immitis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12
Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = -2
Query:  560 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 772
            ++AFR+GK+  L+++D  +RG+D++GV +V+NY+ P   + Y+HR GRTARAG+ GR  T+  + + K  K
Sbjct:  607 VEAFRDGKVPFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVK 677          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12
Identity = 43/134 (32.09%), Postives = 68/134 (50.75%), Query Frame = -2
Query:  362 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGRVTGHAK 763
            FR+GK++ LV SD +TRG+D++ VN V+N+D P   +TY+HR GR+ R G LG    L+              + ND   ++ I   L   ++P+  +   KL      +A  K    FK+ ++ KG    H +
Sbjct:  313 FRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLM--------------SWNDRYSLYKIEQELGTEIKPIPATIDRKLYVADNEDAIPK---PFKIEQLPKGNEKVHTR 429          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DBP6_YEAST (ATP-dependent RNA helicase DBP6 OS=Saccharomyces cerevisiae GN=DBP6 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  452 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKSALDKLK 748
            I +L+++D M+RG+D+  +  V+NYD P   + Y+HR GRTARA +LG  + LL  + E   F  L +  D D   +    +  +L+ES   +Y S+L+ LK
Sbjct:  519 ITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTSSLESLK 620          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DBP6_YEAS7 (ATP-dependent RNA helicase DBP6 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP6 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  452 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKSALDKLK 748
            I +L+++D M+RG+D+  +  V+NYD P   + Y+HR GRTARA +LG  + LL  + E   F  L +  D D   +    +  +L+ES   +Y S+L+ LK
Sbjct:  519 ITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTSSLESLK 620          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DBP2_SCHPO (ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe GN=dbp2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = -2
Query:  524 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL---LQKADNDSCP 772
            L  FR GK  ++V++D  +RG+DV+G+ +V NYD P   + Y+HR GRT RAG  G  +T    D  K+ ++L   L +A  D  P
Sbjct:  412 LNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDP 497          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: YO12_CAEEL (Putative ATP-dependent RNA helicase ZK686.2 OS=Caenorhabditis elegans GN=ZK686.2 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.027e-12
Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = -2
Query:  431 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD--NDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEA 772
            L+ F + + +VL+ SD + RG D+  V+ V+NY+ PA  K ++HRAGRT RAGQ G   ++  K+  + F K+L+  +   D+     +   + E     Y  AL+ LK TV S+A
Sbjct:  442 LEKFNKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDGYVISVGDKESKRLFVKMLKVTNLWGDTVE-EQMEEYIFEKDMDRYSKALESLKATVSSQA 556          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_VANPO (ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.027e-12
Identity = 44/132 (33.33%), Postives = 76/132 (57.58%), Query Frame = -2
Query:  380 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGR 775
            +L  F+ G+  +LV++D   RG+D+  V+ V+NYD P   K+YIHR GRTARAG+ G+  +L+ + +++   + ++       P  ++    I +LR     ++DK    V  E +R++    K++R GKGR
Sbjct:  368 SLDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR-IEDVLGKKLPKENVNKDAILTLR----DSVDKANGEVVMELNRRNK--EKIAR-GKGR 491          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_PICST (ATP-dependent rRNA helicase RRP3 OS=Pichia stipitis GN=RRP3 PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 9.027e-12
Identity = 36/113 (31.86%), Postives = 64/113 (56.64%), Query Frame = -2
Query:  449 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ----KADNDSCPIHSIPSSLIESLRPVYKSALDKLKE 775
            +L  F+ G   +L+++D   RG+D+  V+ V+NYD P   K Y+HR GRTARAG+ G+  +L+ + +++ + ++ Q    K   D  P  ++  +L   +   Y  A+ + KE
Sbjct:  352 SLNKFKSGTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQKKLPKDPSPPKAMLDALHVHVDRAYAEAIRQTKE 464          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_PICGU (ATP-dependent rRNA helicase RRP3 OS=Pichia guilliermondii GN=RRP3 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.027e-12
Identity = 37/122 (30.33%), Postives = 66/122 (54.10%), Query Frame = -2
Query:  422 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ----KADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 775
            +L  F+ GK  +L+++D   RG+D+  V+ V+NYD P   K YIHR GRTARAG+ G+  +L+ + +++ + ++      K   D  P   + ++L   +      A+ + K+  E    +K
Sbjct:  345 SLNKFKSGKANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRIESVLGFKLPKDPSPPRDVLNALHVHVDRASAEAIKQTKDFHEKRTKKK 466          
The following BLAST results are available for this feature:
BLAST of CV712871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
RRP3_KLULA6.912e-1232.82ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces ... [more]
DRS1_COCIM6.912e-1243.66ATP-dependent RNA helicase DRS1 OS=Coccidioides im... [more]
DHH1_PICST6.912e-1232.09ATP-dependent RNA helicase DHH1 OS=Pichia stipitis... [more]
DBP6_YEAST6.912e-1237.25ATP-dependent RNA helicase DBP6 OS=Saccharomyces c... [more]
DBP6_YEAS76.912e-1237.25ATP-dependent RNA helicase DBP6 OS=Saccharomyces c... [more]
DBP2_SCHPO6.912e-1240.70ATP-dependent RNA helicase dbp2 OS=Schizosaccharom... [more]
YO12_CAEEL9.027e-1236.21Putative ATP-dependent RNA helicase ZK686.2 OS=Cae... [more]
RRP3_VANPO9.027e-1233.33ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozym... [more]
RRP3_PICST9.027e-1231.86ATP-dependent rRNA helicase RRP3 OS=Pichia stipiti... [more]
RRP3_PICGU9.027e-1230.33ATP-dependent rRNA helicase RRP3 OS=Pichia guillie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002A05_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712871 ID=CV712871; Name=CV712871; organism=Citrus sinensis; type=EST; length=776bp
GAAGTTTGTAATATACACGTTTGTTACTTTACAGAGCCACAAGGTCACAA
CAAAATTATGTTCACAAGCTATCACAATGCCTCTAATCTTACATTTCCTA
CCTGTTGTACAAAAATGTAATACATTGGCAACTGTTTGCTTTTAATATTA
ACAAAACTTCAATAAGCTAAATGATGTTGTCCGGCATTTGTCTGCTGGAA
CGAGAAATAGAAGAACTGATCAGGAAAAGGTACCAAGTCCTAAGCTCTGA
CATATTGATCAACTCTTGCAATTTGCTCAACGATGAAGAGTGTTTGCACT
TGCACTCGATAGTATCGCACCCATAATTATCCTAATAGTCAGAACATTGG
ATAAATTACTGCTTTGCATGGCCTGTTACTCTGCCTTTGCCCATTCTTGA
TAGCTTGAACCCAATTGTGTGCTTTCTGTGCGCTTCTGATTCAACTGTCT
CTTTTAACTTGTCTAGAGCAGATTTATAAACTGGACGGAGTGACTCAATC
AAACTGGAAGGGATAGAGTGAATGGGACAGGAGTCATTGTCAGCTTTCTG
TAACAGCTTCTTGAAACGCTTCACCTCATCCTTATGCAACAAAGTGAAGC
AACGCCCAAGCTGGCCAGCTCTTGCAGTTCGGCCAGCACGATGAATATAT
GTCTTGATATATGCAGGCTTATCATAATTAACGACATTGTTCACCCCTTC
AACATCCATCCCGCGAGTCATTGCATCTGAGGAAACAAGCACTTGTATCT
TCCCTTCCCGAAATGCCTTCAACGTC
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