CV712871
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_KLULA (ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces lactis GN=RRP3 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12 Identity = 43/131 (32.82%), Postives = 72/131 (54.96%), Query Frame = -2 Query: 380 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGR 772 L F+ GK +LV++D RG+D+ V+ V+NYD P K+YIHR GRTARAG+ G+ +L+ + +++ + ++ P ++ I +LR ++DK V E +R++ + GKGR Sbjct: 350 LDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR-IEDVLGKKLPKENVDKDAILALR----DSVDKANGEVVMELNRRNK---EKQARGKGR 472
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_COCIM (ATP-dependent RNA helicase DRS1 OS=Coccidioides immitis GN=DRS1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12 Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = -2 Query: 560 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 772 ++AFR+GK+ L+++D +RG+D++GV +V+NY+ P + Y+HR GRTARAG+ GR T+ + + K K Sbjct: 607 VEAFRDGKVPFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVK 677
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12 Identity = 43/134 (32.09%), Postives = 68/134 (50.75%), Query Frame = -2 Query: 362 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGRVTGHAK 763 FR+GK++ LV SD +TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+ + ND ++ I L ++P+ + KL +A K FK+ ++ KG H + Sbjct: 313 FRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLM--------------SWNDRYSLYKIEQELGTEIKPIPATIDRKLYVADNEDAIPK---PFKIEQLPKGNEKVHTR 429
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DBP6_YEAST (ATP-dependent RNA helicase DBP6 OS=Saccharomyces cerevisiae GN=DBP6 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12 Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = -2 Query: 452 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKSALDKLK 748 I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA +LG + LL + E F L + D D + + +L+ES +Y S+L+ LK Sbjct: 519 ITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTSSLESLK 620
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DBP6_YEAS7 (ATP-dependent RNA helicase DBP6 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP6 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12 Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = -2 Query: 452 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKSALDKLK 748 I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA +LG + LL + E F L + D D + + +L+ES +Y S+L+ LK Sbjct: 519 ITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTSSLESLK 620
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DBP2_SCHPO (ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe GN=dbp2 PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12 Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = -2 Query: 524 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL---LQKADNDSCP 772 L FR GK ++V++D +RG+DV+G+ +V NYD P + Y+HR GRT RAG G +T D K+ ++L L +A D P Sbjct: 412 LNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDP 497
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: YO12_CAEEL (Putative ATP-dependent RNA helicase ZK686.2 OS=Caenorhabditis elegans GN=ZK686.2 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 9.027e-12 Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = -2 Query: 431 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD--NDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEA 772 L+ F + + +VL+ SD + RG D+ V+ V+NY+ PA K ++HRAGRT RAGQ G ++ K+ + F K+L+ + D+ + + E Y AL+ LK TV S+A Sbjct: 442 LEKFNKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDGYVISVGDKESKRLFVKMLKVTNLWGDTVE-EQMEEYIFEKDMDRYSKALESLKATVSSQA 556
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_VANPO (ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RRP3 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.027e-12 Identity = 44/132 (33.33%), Postives = 76/132 (57.58%), Query Frame = -2 Query: 380 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGR 775 +L F+ G+ +LV++D RG+D+ V+ V+NYD P K+YIHR GRTARAG+ G+ +L+ + +++ + ++ P ++ I +LR ++DK V E +R++ K++R GKGR Sbjct: 368 SLDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR-IEDVLGKKLPKENVNKDAILTLR----DSVDKANGEVVMELNRRNK--EKIAR-GKGR 491
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_PICST (ATP-dependent rRNA helicase RRP3 OS=Pichia stipitis GN=RRP3 PE=3 SV=3) HSP 1 Score: 70.8626 bits (172), Expect = 9.027e-12 Identity = 36/113 (31.86%), Postives = 64/113 (56.64%), Query Frame = -2 Query: 449 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ----KADNDSCPIHSIPSSLIESLRPVYKSALDKLKE 775 +L F+ G +L+++D RG+D+ V+ V+NYD P K Y+HR GRTARAG+ G+ +L+ + +++ + ++ Q K D P ++ +L + Y A+ + KE Sbjct: 352 SLNKFKSGTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQKKLPKDPSPPKAMLDALHVHVDRAYAEAIRQTKE 464
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RRP3_PICGU (ATP-dependent rRNA helicase RRP3 OS=Pichia guilliermondii GN=RRP3 PE=3 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 9.027e-12 Identity = 37/122 (30.33%), Postives = 66/122 (54.10%), Query Frame = -2 Query: 422 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ----KADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 775 +L F+ GK +L+++D RG+D+ V+ V+NYD P K YIHR GRTARAG+ G+ +L+ + +++ + ++ K D P + ++L + A+ + K+ E +K Sbjct: 345 SLNKFKSGKANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRIESVLGFKLPKDPSPPRDVLNALHVHVDRASAEAIKQTKDFHEKRTKKK 466 The following BLAST results are available for this feature:
BLAST of CV712871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 168
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712871 ID=CV712871; Name=CV712871; organism=Citrus sinensis; type=EST; length=776bpback to top |