CX047563

Overview
NameCX047563
Unique NameCX047563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RAB31_RAT (Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.136e-15
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 214
            WVKEL++HG  +IVMA+ GNK DL + REVP +D  EYAE  G   +ETSAK A NI +LF+ I++++P
Sbjct:   99 WVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGALVVETSAKNAINIEELFQGISRQIP 167          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RAB31_MOUSE (Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.136e-15
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 214
            WVKEL++HG  +IVMA+ GNK DL + REVP +D  EYAE  G   +ETSAK A NI +LF+ I++++P
Sbjct:   99 WVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIP 167          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.136e-15
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 214
            WVKEL++HG  +IVMA+ GNK DL + REVP +D  EYAE  G   +ETSAK A NI +LF+ I++++P
Sbjct:   99 WVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIP 167          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RB22A_HUMAN (Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.789e-15
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 214
            WVKEL++HG P+IV+A+ GNK DL + REV  +D  +YA+     F+ETSAK A NIN+LF EI++R+P
Sbjct:   99 WVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RB22A_CANFA (Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.789e-15
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 214
            WVKEL++HG P+IV+A+ GNK DL + REV  +D  +YA+     F+ETSAK A NIN+LF EI++R+P
Sbjct:   99 WVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RB22A_MOUSE (Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 6.214e-15
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 214
            WV+EL++HG P IV+A+ GNK DL + REV  +D  +YA+     F+ETSAK A NIN+LF EI++R+P
Sbjct:   99 WVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: YPT5_SCHPO (GTP-binding protein ypt5 OS=Schizosaccharomyces pombe GN=ypt5 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.816e-13
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADL-HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 214
            W+KELQ+     IV+AL GNK DL  E+R V   D   YA +  + F ETSAKTA+N+N+LF  IAK+LP
Sbjct:  109 WIKELQRQAPEGIVIALAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLP 178          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.210e-12
Identity = 33/74 (44.59%), Postives = 53/74 (71.62%), Query Frame = 2
Query:    2 QYWVKELQKHGSPDIVMALVGNKADLHEK---REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 214
            ++WVKEL +  S DI++ALVGNK D+ ++   R+V  ++G + AE+ G+ F ETSAKT +N+N +F  I +++P
Sbjct:   99 RHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 172          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.923e-12
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 199
            W++EL+ H   +IV+ L+GNK DL  +R+VP +D  E+AEK G+FF+ETSA  A N+   F  +
Sbjct:  111 WLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTV 174          
BLAST of CX047563 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.398e-12
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 2
Query:    8 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 211
            W+KEL  H    IV+ LVGNK+DL + REVP ++   +AE NG+ F+ETSA  + N+   FE + K +
Sbjct:  106 WLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 173          
The following BLAST results are available for this feature:
BLAST of CX047563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RAB31_RAT2.136e-1555.07Ras-related protein Rab-31 OS=Rattus norvegicus GN... [more]
RAB31_MOUSE2.136e-1555.07Ras-related protein Rab-31 OS=Mus musculus GN=Rab3... [more]
RAB31_HUMAN2.136e-1555.07Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]
RB22A_HUMAN2.789e-1555.07Ras-related protein Rab-22A OS=Homo sapiens GN=RAB... [more]
RB22A_CANFA2.789e-1555.07Ras-related protein Rab-22A OS=Canis familiaris GN... [more]
RB22A_MOUSE6.214e-1553.62Ras-related protein Rab-22A OS=Mus musculus GN=Rab... [more]
YPT5_SCHPO5.816e-1352.86GTP-binding protein ypt5 OS=Schizosaccharomyces po... [more]
VPS21_YEAST2.210e-1244.59Vacuolar protein sorting-associated protein 21 OS=... [more]
RB11A_LOTJA4.923e-1246.88Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RAB25_BOVIN8.398e-1245.59Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14H06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14H06-P11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047563 ID=CX047563; Name=CX047563; organism=Citrus sinensis; type=EST; length=501bp
GCAATACTGGGTTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCA
TGGCTTTAGTTGGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCA
GCTCAAGATGGCATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGA
AACATCGGCCAAGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTG
CTAAGCGACTTCCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGGAA
TCTGAACTGCTGTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCA
TATCAAAGATTTGTGTATATTGTGATATATGATGTGGTTCCCTGTTTCAT
TTTGCAACTGCATTATGATTTATGAATCTCACTTGGAAACTTTCTGTTGC
AACCTTAAATCTTAAGGGTGATATAAACATTTAGACGCCGCAATGATGCA
ACCAAAGAGTTGAATTATAGATTATTTTACCTTTTAAAAAAAAAAAAAAA
A
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