CV712801

Overview
NameCV712801
Unique NameCV712801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_BARBK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=dxs PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.187e-57
Identity = 116/207 (56.04%), Postives = 145/207 (70.05%), Query Frame = -2
Query:  150 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG-QTREALEI 767
            GSFD+ F+A LP  VVMAPSDE EL HMV TAA  D  P  FRYPRG GIG++LP   +G  LE+GKGR+L EG RVAL+ +GT +   L A+  L + G+  TVADARF KPLD  L+R LA+ HEV IT+EEG+IGGFG+HV+QFLA + LL+  +K R L LPD Y++HGSP   L++ GL    I   VF  LG +TR+ L+I
Sbjct:  434 GSFDIVFLATLPEFVVMAPSDEVELMHMVRTAAVYDQGPISFRYPRGEGIGMDLP--QRGEVLEIGKGRVLREGSRVALVCFGTQLSEVLVAADELAAEGISTTVADARFAKPLDKDLMRRLAREHEVFITIEEGAIGGFGAHVLQFLAQEALLEHGLKVRTLRLPDEYLNHGSPEKILSRVGLDAKGIINAVFTSLGYETRKTLQI 638          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_BARHE (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella henselae GN=dxs PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.200e-56
Identity = 113/199 (56.78%), Postives = 142/199 (71.36%), Query Frame = -2
Query:  171 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 767
            GSFD+ F+  LP  VVMAPSDE EL HMV TAAA D  P  FRYPRG GIG++LP   +G  LE+GKGRIL EG R+AL+ +GT +   L A+  L + GL  TVADARF KPLD  L+R LA+ HEVL+T+EEG+IGGFG+H++QFLA +GLL+  +K R L LPD Y++HGS    L++ GL    I  TVF+ LG+
Sbjct:  434 GSFDIVFLTTLPEFVVMAPSDEVELMHMVRTAAAYDQGPISFRYPRGEGIGMDLP--QRGEILEIGKGRILHEGNRIALVCFGTRISEVLVAADELSAEGLSTTVADARFAKPLDKDLMRRLAREHEVLVTIEEGAIGGFGAHLLQFLAQEGLLEHGLKVRTLKLPDEYLNHGSQEKVLSRIGLDAVGIVNTVFSALGR 630          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_AGRRK (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=dxs PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.200e-56
Identity = 116/200 (58.00%), Postives = 143/200 (71.50%), Query Frame = -2
Query:  168 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQT 767
            GSFD TF+A LP  VVMA +DEAEL HMV TAAA D  P  FRYPRG G+G+E+P   +G  LE+GKGRI+ +G +VALL +GT +   LAA+  L++ GL  TVADARF KPLDH LIR LA  HEVLIT+EEGS+GGFGS V+QFLA +GLLD  +K R LV+PD +++   P    A AGL  + I  TVF  LG++
Sbjct:  434 GSFDTTFLATLPGFVVMAAADEAELKHMVRTAAAYDLGPISFRYPRGEGVGIEMP--ERGQILEIGKGRIVKQGSKVALLSFGTRLADSLAAAEDLDAAGLPTTVADARFAKPLDHDLIRQLASHHEVLITIEEGSVGGFGSQVMQFLASEGLLDNGLKIRTLVMPDIWVEQAKPEVMNAMAGLDRAGIVQTVFKALGRS 631          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_NITHX (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dxs PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.673e-56
Identity = 114/200 (57.00%), Postives = 139/200 (69.50%), Query Frame = -2
Query:  171 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLD-GTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 767
            GSFD  ++ CLPN V+MA SDEAEL HMVAT  AI+DRPS  RYPRG G GVE+P    G+PL +GKGRI+ +G +VALL  GT +  C  A+  L +HGL  T+ADARF KPLD  L+  LA+ H+VLIT+EEGSIGGFGSHV+Q LA  G LD G V+ R +VLPD ++DH +P    A  GL    I A VF  LG+
Sbjct:  461 GSFDNAYLGCLPNFVIMAASDEAELVHMVATQVAINDRPSAVRYPRGEGRGVEMP--EVGVPLPIGKGRIVRQGSKVALLSLGTRLAECEKAADELAAHGLSTTIADARFMKPLDVDLVLKLARDHDVLITIEEGSIGGFGSHVMQTLAEHGALDSGQVRVRAMVLPDEFLDHDTPNAMYASVGLDDRGIVAKVFEALGK 658          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_BART1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=dxs PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.491e-56
Identity = 111/199 (55.78%), Postives = 141/199 (70.85%), Query Frame = -2
Query:  171 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 767
            GSFD+ F+A LP  VVMAPSDE EL HMV TAAA D  P  FRYPRG GIG++LP   +G  LE+GKGR+L EG R+AL+ +GT +   L A+  L + GL  TVADARF KPLD  L+R LA+ HEVL+T+EEG+IGGFG+H++QFLA +GLL+  +K R L  PD Y++HGSP   L+  GL    I  TV  ++G+
Sbjct:  434 GSFDIVFLATLPEFVVMAPSDELELMHMVRTAAAYDQGPISFRYPRGEGIGIDLP--QRGEILEIGKGRVLREGNRIALVCFGTRMSEVLRAADRLGAKGLSTTVADARFAKPLDKDLMRRLAREHEVLVTIEEGAIGGFGAHLLQFLAQEGLLEHGLKVRTLKFPDEYLNHGSPEKVLSTIGLDAMGIVNTVLTVVGR 630          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_RHIL3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dxs PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.559e-56
Identity = 113/199 (56.78%), Postives = 141/199 (70.85%), Query Frame = -2
Query:  171 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 767
            GSFD  F+  LP  VVMA +DEAEL HMV TA A D  P  FRYPRG G+GV++P   +G  L++GKGRI+ EG +VALL +GT +  CL A+  L++ GL  TVADARF KPLDH LIR LA+ HE++ITVEEGSIGGFGSHV+ FLA +GLLD  +K R LV+PD +++   P    A AGL  + I +TVF  LG+
Sbjct:  434 GSFDTAFLTTLPGFVVMAAADEAELKHMVRTAVAYDGGPISFRYPRGEGVGVDMPA--RGEILQIGKGRIVKEGTKVALLSFGTRLADCLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQLARHHEMVITVEEGSIGGFGSHVMHFLATEGLLDNGLKLRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFKALGR 630          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_BARQU (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella quintana GN=dxs PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.955e-56
Identity = 113/199 (56.78%), Postives = 140/199 (70.35%), Query Frame = -2
Query:  171 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 767
            GSFD+ F+A LP  VVMAPSDE EL HMV TAAA D  P  FRYPRG G+G++LP   +G  LE+GKGR+L EG RVAL+ +GT +   L A+  L + GL  TVADARF KPLD  L+R LA  HEVL+ VEEG+IGGFG+H++QFLA +GLL+  +K R L  PD Y++HGSP   L++ GL    I  TVF  LG+
Sbjct:  434 GSFDIVFLATLPEFVVMAPSDEVELMHMVRTAAAYDQGPISFRYPRGEGVGMDLP--QRGELLEIGKGRVLREGSRVALVCFGTRMSEVLVAADALIAEGLSTTVADARFAKPLDKDLMRRLACEHEVLVAVEEGAIGGFGAHLLQFLAKEGLLEHGLKVRTLKFPDEYLNHGSPEKVLSRIGLDAVGIVNTVFTALGR 630          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_RHIE6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CIAT 652) GN=dxs PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.016e-55
Identity = 113/199 (56.78%), Postives = 142/199 (71.36%), Query Frame = -2
Query:  171 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 767
            GSFD  F+A LP  VVMA +DEAEL HMV TA A D  P  FRYPRG G+GV++P   +G  L++GKGRI+ EG +VALL +GT +  CL A+  LE+ GL  TVADARF KPLDH LIR LA+ HE+LITVEEGS+GGFGS V+Q+L+ +GLLD  +K R LV+PD +++   P    A AGL  + I +TVF  LG+
Sbjct:  434 GSFDTAFLATLPGFVVMAAADEAELKHMVRTAVAYDAGPISFRYPRGEGVGVDMPA--RGEILQIGKGRIVKEGTKVALLSFGTRLADCLLAAEDLEAAGLSTTVADARFAKPLDHDLIRQLARHHEMLITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRALGR 630          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_RHIEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dxs PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.327e-55
Identity = 113/197 (57.36%), Postives = 141/197 (71.57%), Query Frame = -2
Query:  177 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 767
            GSFD  F+A LP  VVMA +DEAEL HMV TAAA D  P  FRYPRG G+GV++P   +G  L++GKGRI+ EG +VALL +GT +  CL AS  LE+ GL  TVADARF KPLDH L+R LA+ HE+LITVEEGS+GGFGS V+Q+L+ +GLLD  +K R LV+PD +++   P    A AGL  + I +TVF  L
Sbjct:  434 GSFDTAFLATLPGFVVMAAADEAELKHMVRTAAAYDAGPISFRYPRGEGVGVDMPA--RGEILQIGKGRIVKEGTKVALLSFGTRLADCLLASEDLEAAGLSTTVADARFAKPLDHELLRQLARHHEMLITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRAL 628          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_SILPO (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter pomeroyi GN=dxs PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.733e-55
Identity = 111/198 (56.06%), Postives = 140/198 (70.71%), Query Frame = -2
Query:  174 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 767
            GSFD+ ++A LP MVVMA +DEAEL HMVATAAA DD P  FRYPRG G+GVE+P    G  LE+GKGR++ +G RVALL +GT +     A+  L + G+  T+ADARF KPLD  LI +LA  HE LIT+EEG++GGFGSHV Q LA +G+ D  +K+R +VLPD +ID  SPAD  A AG+    I A V ++LG
Sbjct:  438 GSFDIAYLANLPGMVVMAAADEAELVHMVATAAAHDDGPIAFRYPRGEGVGVEMP--ELGKVLEIGKGRMIQKGARVALLSFGTRLTEVQKAAEALAARGITPTIADARFAKPLDRDLILNLAHDHEALITIEEGAVGGFGSHVAQLLADEGVFDHGLKFRSMVLPDIFIDQSSPADMYAVAGMNAPQIEAKVLDVLG 633          
The following BLAST results are available for this feature:
BLAST of CV712801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_BARBK9.187e-5756.041-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_BARHE1.200e-5656.781-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_AGRRK1.200e-5658.001-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_NITHX2.673e-5657.001-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS_BART13.491e-5655.781-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_RHIL34.559e-5656.781-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_BARQU5.955e-5656.781-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_RHIE61.016e-5556.781-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_RHIEC1.327e-5557.361-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_SILPO1.733e-5556.061-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O16_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712801 ID=CV712801; Name=CV712801; organism=Citrus sinensis; type=EST; length=771bp
GGTTGATGTAAACTAAATAAACCAATGCTAACAAAAGCAATTTCTACAGT
GCCGAGGCTGAAATGTATATAACTTCTTACAGTTCTTATATTTGTACATT
GTGGAGAATATTGGCAATAATTGTGTATTCTTCAGCTTTTGAATGACATT
ATCTCAAGAGCCTCTCTTGTCTGTCCAAGAATGTTGAATACTGTTGCCGC
AATGTGGGATGGTGTAAGACCAGCTTGAGCCAACTGGTCAGCAGGTGATC
CATGGTCAATATATCGATCGGGGAGTACAAGTGGTCTCCACTTGACCGTG
CCATCAAGAAGACCATCGAGAGCGAGGAACTGAACAACATGTGATCCAAA
ACCCCCAATTGATCCTTCCTCCACAGTAATCAAAACTTCATGTGATTTTG
CCAAGCTACGAATGAGGGCATGATCCAGTGGTTTACAGAATCGAGCATCA
GCTACAGTCAGCCGTAACCCATGGGATTCCAATAAAGCAGAAGCAGCTAA
ACAGCTCTGAACGGCTGTACCATAGCCCAAGAGTGCGACTCTTTCACCTT
CAATCAGTATCCTGCCTTTGCCAACCTCAAGAGGAATGCCTTTGTTTCCT
GGTGGCAGCTCAACACCAATCCCATTTCCTCTTGGGTAACGGAAACAGCT
AGGGCGGTCATCTATAGCAGCAGCAGTGGCAACCATGTGAAAAAGCTCTG
CCTCATCAGAAGGAGCCATTACCACCATGTTAGGAAGGCATGCCATAAAA
GTGACATCAAAAGACCCACAA
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