CV712782

Overview
NameCV712782
Unique NameCV712782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_NICTO (50S ribosomal protein L23, chloroplastic OS=Nicotiana tomentosiformis GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.955e-46
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP K RRMGPIM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_NICSY (50S ribosomal protein L23, chloroplastic OS=Nicotiana sylvestris GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.955e-46
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP K RRMGPIM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_COFAR (50S ribosomal protein L23, chloroplastic OS=Coffea arabica GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.955e-46
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYT NVESGSTRTEIKHWVELFFGVKVIAMNSH+LP KGRRMGPIM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_ATRBE (50S ribosomal protein L23, chloroplastic OS=Atropa belladonna GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.955e-46
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP K RRMGPIM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_PRUPE (50S ribosomal protein L23, chloroplastic OS=Prunus persica GN=rpl23 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.016e-45
Identity = 88/93 (94.62%), Postives = 90/93 (96.77%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHW ELFFGVKVIAMNSH+LP +GRRMGPIM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWFELFFGVKVIAMNSHRLPGRGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_DAUCA (50S ribosomal protein L23, chloroplastic OS=Daucus carota GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.016e-45
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP KGRRMGPIM  TMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGQTMHYRRMIITLQPGYSIPPLRKKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_PLAOC (50S ribosomal protein L23, chloroplastic OS=Platanus occidentalis GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.327e-45
Identity = 88/93 (94.62%), Postives = 89/93 (95.70%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDK IRLLG NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP KGRRMGPIM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKGIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_PANGI (50S ribosomal protein L23, chloroplastic OS=Panax ginseng GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.263e-45
Identity = 88/93 (94.62%), Postives = 90/93 (96.77%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP +GRRMGPIM  TMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGRGRRMGPIMGQTMHYRRMIITLQPGYSIPPLRKKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_OENEH (50S ribosomal protein L23, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.955e-45
Identity = 87/93 (93.55%), Postives = 89/93 (95.70%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDK +RLLGKNQYTSNVESGSTRTEIKHWVELFFGVKV AMNSH+LP KGRRMGPIM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKGVRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVQAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_EUCGG (50S ribosomal protein L23, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.599e-45
Identity = 87/93 (93.55%), Postives = 89/93 (95.70%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYT NVESGSTRTEIKHWVELFFGVKV AMNSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVKAMNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPPLRKKRT 93          
The following BLAST results are available for this feature:
BLAST of CV712782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RK23_NICTO5.955e-4695.7050S ribosomal protein L23, chloroplastic OS=Nicoti... [more]
RK23_NICSY5.955e-4695.7050S ribosomal protein L23, chloroplastic OS=Nicoti... [more]
RK23_COFAR5.955e-4695.7050S ribosomal protein L23, chloroplastic OS=Coffea... [more]
RK23_ATRBE5.955e-4695.7050S ribosomal protein L23, chloroplastic OS=Atropa... [more]
RK23_PRUPE1.016e-4594.6250S ribosomal protein L23, chloroplastic OS=Prunus... [more]
RK23_DAUCA1.016e-4595.7050S ribosomal protein L23, chloroplastic OS=Daucus... [more]
RK23_PLAOC1.327e-4594.6250S ribosomal protein L23, chloroplastic OS=Platan... [more]
RK23_PANGI2.263e-4594.6250S ribosomal protein L23, chloroplastic OS=Panax ... [more]
RK23_OENEH2.955e-4593.5550S ribosomal protein L23, chloroplastic OS=Oenoth... [more]
RK23_EUCGG8.599e-4593.5550S ribosomal protein L23, chloroplastic OS=Eucaly... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712782 ID=CV712782; Name=CV712782; organism=Citrus sinensis; type=EST; length=804bp
GAAAGTAGGATACTCCAAATTCGTGGATCCAAGAGTTTTATAAAACGTTC
TTGGTGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCC
ATGAATCTAAGAAATAGTGAGAATTCTTGATCTCTCTCAATATCTCTCTC
AATTCGAAAATCCAGGATTTGAATTGATGTCCTTTCATTGATTCCTCCTA
AATTGCATTGATTTATCCTAAAGATTTCATTTCAATTGAAATTTGGTTAT
TCACCATGTACGAGGATCCCCGCTAAGCATCCATGGCTGAATGGTTAAAG
CGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTACTGGATGCA
CGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATG
GAATCTCATCATCTATACATAACGAATTGGTGTGGTATATTCATATCATA
ACATATGAACAGTAAGAACTAGCATTCTTATTGAGACTCGAACTCATAGG
GAAGAAAATCGATTTATGGATGGAATCAAATATGCAGTATTTACAGACAA
AAGTATTCGGTTATTGGGAAAAAATCAATATACTTCTAATGTCGAATCAG
GATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTC
AAGGTAATTGCTATGAATAGTCATCAACTCCCCCGAAAGGGTAGAAGAAT
GGGACCTATTATGGCACATACAATGCATTACAGACGTATGATCATTACGC
TTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATC
AAAA
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