CV712782

Overview
NameCV712782
Unique NameCV712782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_IPOPU (Protein ycf2 OS=Ipomoea purpurea GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.424e-23
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = -2
Query:    3 QFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 176
            Q K  IFELREI+REIKNSHYFLDSWTQFNSVGSFIHIFFHQERF+KL DPRI+SILL
Sbjct:   12 QIKFCIFELREIMREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFLKLFDPRIFSILL 69          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_CUCSA (Protein ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.083e-23
Identity = 52/62 (83.87%), Postives = 53/62 (85.48%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKG QFK WI E REI    KNSHYFLDSWTQFNS+GSFIHIFFHQERFIKLLD RIWSILL
Sbjct:    1 MKGQQFKLWILEFREI----KNSHYFLDSWTQFNSLGSFIHIFFHQERFIKLLDSRIWSILL 58          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_ACOCL (Protein ycf2 OS=Acorus calamus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.083e-23
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MK HQF+ WIFELREILREIKNS +FLDSWT+F+SV S IHIFFHQER +KL DPRIWSILL
Sbjct:    1 MKRHQFRFWIFELREILREIKNSPHFLDSWTKFDSVRSLIHIFFHQERLMKLFDPRIWSILL 62          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_ACOAM (Protein ycf2 OS=Acorus americanus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.083e-23
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MK HQF+ WIFELREILREIKNS +FLDSWT+F+SV S IHIFFHQER +KL DPRIWSILL
Sbjct:    1 MKRHQFRFWIFELREILREIKNSPHFLDSWTKFDSVRSLIHIFFHQERLMKLFDPRIWSILL 62          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_NYMAL (Protein ycf2 OS=Nymphaea alba GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.208e-22
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MK HQFKS IFELREILREIKNS YFLDSWT+F+SV SF HIFFHQERF+KLL P+ WS+LL
Sbjct:    1 MKRHQFKSCIFELREILREIKNSRYFLDSWTKFDSVVSFTHIFFHQERFVKLLGPQTWSVLL 62          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_NUPAD (Protein ycf2 OS=Nuphar advena GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.208e-22
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MK HQFKS IFELREILREIKNS YFLDSWT+F+SV SF HIFFHQERF+KLL P+ WS+LL
Sbjct:    1 MKRHQFKSCIFELREILREIKNSRYFLDSWTKFDSVVSFTHIFFHQERFVKLLGPQTWSVLL 62          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_MARPO (50S ribosomal protein L23, chloroplastic OS=Marchantia polymorpha GN=rpl23 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.692e-22
Identity = 49/91 (53.85%), Postives = 68/91 (74.73%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKK 788
            M+ +KY V T+K+IRLL KNQY+ +V   S +T+IK W+ELFF VKVI++NSH+LP+K +++G    +T+ Y+RMII LQ GYSIP    K
Sbjct:    1 MNQVKYPVLTEKTIRLLEKNQYSFDVNIDSNKTQIKKWIELFFNVKVISVNSHRLPKKKKKIGTTTGYTVRYKRMIIKLQSGYSIPLFSNK 91          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_ANTFO (50S ribosomal protein L23, chloroplastic OS=Anthoceros formosae GN=rpl23 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.996e-22
Identity = 46/86 (53.49%), Postives = 68/86 (79.07%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIP 773
            MD +KY V T+K+IRLL +NQY  +V+  +++TEIK W++ FF VKV+AMNSH+ P+K +R+GP++ + + Y+RMIITL+  YSIP
Sbjct:    1 MDKVKYPVLTEKTIRLLERNQYCFDVDLKASKTEIKQWIQDFFKVKVVAMNSHRPPKKKKRIGPVLGYPVRYKRMIITLESNYSIP 86          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_PINKO (50S ribosomal protein L23, chloroplastic OS=Pinus koraiensis GN=rpl23 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.023e-21
Identity = 50/86 (58.14%), Postives = 66/86 (76.74%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIP 773
            MD +KY V T+KSIRLL +NQYT NV+  S +T+IK+W+E FF VKVIAMNS++LP KG + G ++ H +  +RMIITL+ G SIP
Sbjct:    1 MDEVKYPVLTEKSIRLLERNQYTFNVDLQSNKTKIKNWIENFFDVKVIAMNSYRLPEKGGKRGSMIVHPIRCKRMIITLRTGDSIP 86          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_PICAB (50S ribosomal protein L23, chloroplastic OS=Picea abies GN=rpl23 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.336e-21
Identity = 50/86 (58.14%), Postives = 66/86 (76.74%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIP 773
            MD +KY V T+KSIRLL +NQYT NV+S   +T++K W+E FF VKVIAMNS++LP KG + G ++ H +  +RMIITL+PG SIP
Sbjct:    1 MDEVKYPVLTEKSIRLLERNQYTFNVDSQLNKTKMKIWIEHFFDVKVIAMNSYRLPEKGGKGGSMIGHPIRCKRMIITLKPGDSIP 86          
The following BLAST results are available for this feature:
BLAST of CV712782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
YCF2_IPOPU5.424e-2387.93Protein ycf2 OS=Ipomoea purpurea GN=ycf2-A PE=3 SV... [more]
YCF2_CUCSA7.083e-2383.87Protein ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=... [more]
YCF2_ACOCL7.083e-2380.65Protein ycf2 OS=Acorus calamus GN=ycf2-A PE=3 SV=1[more]
YCF2_ACOAM7.083e-2380.65Protein ycf2 OS=Acorus americanus GN=ycf2-A PE=3 S... [more]
YCF2_NYMAL1.208e-2280.65Protein ycf2 OS=Nymphaea alba GN=ycf2-A PE=3 SV=1[more]
YCF2_NUPAD1.208e-2280.65Protein ycf2 OS=Nuphar advena GN=ycf2-A PE=3 SV=1[more]
RK23_MARPO2.692e-2253.8550S ribosomal protein L23, chloroplastic OS=Marcha... [more]
RK23_ANTFO5.996e-2253.4950S ribosomal protein L23, chloroplastic OS=Anthoc... [more]
RK23_PINKO1.023e-2158.1450S ribosomal protein L23, chloroplastic OS=Pinus ... [more]
RK23_PICAB1.336e-2158.1450S ribosomal protein L23, chloroplastic OS=Picea ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712782 ID=CV712782; Name=CV712782; organism=Citrus sinensis; type=EST; length=804bp
GAAAGTAGGATACTCCAAATTCGTGGATCCAAGAGTTTTATAAAACGTTC
TTGGTGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCC
ATGAATCTAAGAAATAGTGAGAATTCTTGATCTCTCTCAATATCTCTCTC
AATTCGAAAATCCAGGATTTGAATTGATGTCCTTTCATTGATTCCTCCTA
AATTGCATTGATTTATCCTAAAGATTTCATTTCAATTGAAATTTGGTTAT
TCACCATGTACGAGGATCCCCGCTAAGCATCCATGGCTGAATGGTTAAAG
CGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTACTGGATGCA
CGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATG
GAATCTCATCATCTATACATAACGAATTGGTGTGGTATATTCATATCATA
ACATATGAACAGTAAGAACTAGCATTCTTATTGAGACTCGAACTCATAGG
GAAGAAAATCGATTTATGGATGGAATCAAATATGCAGTATTTACAGACAA
AAGTATTCGGTTATTGGGAAAAAATCAATATACTTCTAATGTCGAATCAG
GATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTC
AAGGTAATTGCTATGAATAGTCATCAACTCCCCCGAAAGGGTAGAAGAAT
GGGACCTATTATGGCACATACAATGCATTACAGACGTATGATCATTACGC
TTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATC
AAAA
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