CV712782

Overview
NameCV712782
Unique NameCV712782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_MESVI (50S ribosomal protein L23, chloroplastic OS=Mesostigma viride GN=rpl23 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.025e-13
Identity = 38/85 (44.71%), Postives = 59/85 (69.41%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSI 770
            +D +KY V T+K+ RLL  NQYT +V+  + +  IK  +E FF VKV+++N+H+ PRK RR+G    +  +Y+R+I+TL+ G SI
Sbjct:    2 IDIVKYPVLTEKATRLLENNQYTFDVDPKANKITIKALIEDFFNVKVLSVNTHRPPRKKRRIGRSEGYRPNYKRVIVTLKTGDSI 86          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_NEPOL (50S ribosomal protein L23, chloroplastic OS=Nephroselmis olivacea GN=rpl23 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.749e-13
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIP 773
            +D +K  V T+K+ R+L KNQYT +VE   T+ +IK  +E  F V+V+++N+H+ PR+ RR+G    +   Y+R IITL+ G+ IP
Sbjct:    3 IDLVKRPVITEKATRILEKNQYTFDVELSLTKPKIKALIEKAFKVEVVSVNTHRPPRRKRRLGTTQGYLPRYKRAIITLKRGFMIP 88          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_PSEAK (50S ribosomal protein L23, chloroplastic OS=Pseudendoclonium akinetum GN=rpl23 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.933e-12
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIP 773
            +D +KY V T+KS RL+ KNQYT +V+   T+ +I+   E  F +KV+A+N+H LP K +R+G  +     Y+R IIT++   +IP
Sbjct:    2 IDLVKYPVSTEKSYRLIEKNQYTFDVDVRLTKPQIRKVFENLFDIKVLAVNTHLLPTKKKRLGLNLGFKTRYKRAIITIKANQTIP 87          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_THAPS (50S ribosomal protein L23, chloroplastic OS=Thalassiosira pseudonana GN=rpl23 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.347e-12
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSI 770
            M+ IKY + TDK+ RLL  NQY+  V   S +  IK  +E  F VKV+ +N+  LP+K +R+G  +    HY++ I+TL  G +I
Sbjct:    7 MNVIKYPIITDKATRLLANNQYSFIVSPKSDKPTIKAAIEYLFNVKVVKINTAHLPKKKKRIGQYLGWKAHYKKAIVTLSEGDTI 91          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RL23_TRIEI (50S ribosomal protein L23 OS=Trichodesmium erythraeum (strain IMS101) GN=rplW PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.637e-11
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRK 785
            +D IK  V T+K+ RL+  NQYT +V+  +T+  IK  +E  F VKVI +N+  LPRK RR+G  +     Y+R I+TL+ G    P+RK
Sbjct:    9 VDIIKNPVVTEKATRLMELNQYTFDVDPRATKPMIKQVIEQIFEVKVIGINTLNLPRKKRRVGKYIGFKPRYKRAIVTLEDG---EPIRK 95          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_ADICA (50S ribosomal protein L23, chloroplastic OS=Adiantum capillus-veneris GN=rpl23 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.138e-11
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRK-GRRMGPIMAHTMHYRRMIITLQPGYSIP 773
            MD +K  V T KSIRLL +NQYT  V+   T+T +K W+E FF VKV  +NS ++  K G++   +    + Y++MI+ L+  Y IP
Sbjct:    1 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSRMTSKNGKKKNKLNITYVSYKKMIVRLKKNYFIP 87          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_GUITH (50S ribosomal protein L23, chloroplastic OS=Guillardia theta GN=rpl23 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.762e-11
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSI 770
            +D +KY + TDK+ RLL  NQYT      +T+T+IK+ +E  F VKVI++N+  LP K +R+G  +     Y++ ++TL+   +I
Sbjct:    5 IDLVKYPLITDKATRLLELNQYTFLTSRVATKTDIKNAIEFLFNVKVISINTCLLPLKRKRLGKFVGSKPRYKKAVVTLEKNNTI 89          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_ODOSI (50S ribosomal protein L23, chloroplastic OS=Odontella sinensis GN=rpl23 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.220e-11
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 3
Query:  525 IKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPG 761
            IKY + TDK+ RLL  NQY+  V   S +  IK  +E  F VKVI +N+  LP+K +R+G  +    HY++ I+TL  G
Sbjct:   15 IKYPIITDKATRLLENNQYSFIVNPYSDKITIKAAIEYLFNVKVIKVNTCHLPKKKKRVGKYLGWKSHYKKAIVTLSQG 93          
The following BLAST results are available for this feature:
BLAST of CV712782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RK23_MESVI1.025e-1344.7150S ribosomal protein L23, chloroplastic OS=Mesost... [more]
RK23_NEPOL1.749e-1343.0250S ribosomal protein L23, chloroplastic OS=Nephro... [more]
RK23_PSEAK1.933e-1241.8650S ribosomal protein L23, chloroplastic OS=Pseude... [more]
RK23_THAPS7.347e-1241.1850S ribosomal protein L23, chloroplastic OS=Thalas... [more]
RL23_TRIEI1.637e-1143.3350S ribosomal protein L23 OS=Trichodesmium erythra... [more]
RK23_ADICA2.138e-1142.5350S ribosomal protein L23, chloroplastic OS=Adiant... [more]
RK23_GUITH4.762e-1138.8250S ribosomal protein L23, chloroplastic OS=Guilla... [more]
RK23_ODOSI6.220e-1143.0450S ribosomal protein L23, chloroplastic OS=Odonte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712782 ID=CV712782; Name=CV712782; organism=Citrus sinensis; type=EST; length=804bp
GAAAGTAGGATACTCCAAATTCGTGGATCCAAGAGTTTTATAAAACGTTC
TTGGTGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCC
ATGAATCTAAGAAATAGTGAGAATTCTTGATCTCTCTCAATATCTCTCTC
AATTCGAAAATCCAGGATTTGAATTGATGTCCTTTCATTGATTCCTCCTA
AATTGCATTGATTTATCCTAAAGATTTCATTTCAATTGAAATTTGGTTAT
TCACCATGTACGAGGATCCCCGCTAAGCATCCATGGCTGAATGGTTAAAG
CGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTACTGGATGCA
CGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATG
GAATCTCATCATCTATACATAACGAATTGGTGTGGTATATTCATATCATA
ACATATGAACAGTAAGAACTAGCATTCTTATTGAGACTCGAACTCATAGG
GAAGAAAATCGATTTATGGATGGAATCAAATATGCAGTATTTACAGACAA
AAGTATTCGGTTATTGGGAAAAAATCAATATACTTCTAATGTCGAATCAG
GATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTC
AAGGTAATTGCTATGAATAGTCATCAACTCCCCCGAAAGGGTAGAAGAAT
GGGACCTATTATGGCACATACAATGCATTACAGACGTATGATCATTACGC
TTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATC
AAAA
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