CV712782

Overview
NameCV712782
Unique NameCV712782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_SINAL (50S ribosomal protein L23, chloroplastic OS=Sinapis alba GN=rpl23 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.268e-44
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYT NVESGSTRTEIKHWVELFFGVKVIAMNSH+LP K +RMGPI+ HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQPGYSIPPLRKKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_PHAAO (50S ribosomal protein L23, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.268e-44
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFT+KSIRLLG NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP KGRRMGPIM HTMHYRRMIITLQPGYSIPPL +KRT
Sbjct:    1 MDGIKYAVFTEKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIEKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_DRIGR (50S ribosomal protein L23, chloroplastic OS=Drimys granadensis GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.268e-44
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFT+KSIRLLG NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP KGRRMGPIM HTMHYRRMIITLQPGYSIPPL +KRT
Sbjct:    1 MDGIKYAVFTEKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLIEKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_ARATH (50S ribosomal protein L23, chloroplastic OS=Arabidopsis thaliana GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.268e-44
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYT NVESGSTRTEIKHWVELFFGVKVIAMNSH+LP K +RMGPI+ HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQPGYSIPPLRKKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_NYMAL (50S ribosomal protein L23, chloroplastic OS=Nymphaea alba GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.279e-44
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFT+KSIRLLG NQYTSNVESGSTRTEIKHW+ELFFGVKV+AMNSH+LP KGRRMGPIM HTMHYRRMIITLQPGYSIPPL +KRT
Sbjct:    1 MDGIKYAVFTEKSIRLLGNNQYTSNVESGSTRTEIKHWIELFFGVKVVAMNSHRLPGKGRRMGPIMRHTMHYRRMIITLQPGYSIPPLIEKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_POPAL (50S ribosomal protein L23, chloroplastic OS=Populus alba GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.507e-44
Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAV TDKSIRLL KNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP KGRRM PIM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVVTDKSIRLLLKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMRPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_HELAN (50S ribosomal protein L23, chloroplastic OS=Helianthus annuus GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.242e-43
Identity = 86/93 (92.47%), Postives = 88/93 (94.62%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGI+YAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+L  K RRMGPIM  TMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIRYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLRGKARRMGPIMGQTMHYRRMIITLQPGYSIPPLRKKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_GOSHI (50S ribosomal protein L23, chloroplastic OS=Gossypium hirsutum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.242e-43
Identity = 86/93 (92.47%), Postives = 87/93 (93.55%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKY V TDKSIRLL KNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP KGRRMGPIM HTMHYRRMIITLQPGYSIPPLR KRT
Sbjct:    1 MDGIKYVVVTDKSIRLLVKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRTKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_GOSBA (50S ribosomal protein L23, chloroplastic OS=Gossypium barbadense GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.242e-43
Identity = 86/93 (92.47%), Postives = 87/93 (93.55%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKY V TDKSIRLL KNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP KGRRMGPIM HTMHYRRMIITLQPGYSIPPLR KRT
Sbjct:    1 MDGIKYVVVTDKSIRLLVKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRTKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_LACSA (50S ribosomal protein L23, chloroplastic OS=Lactuca sativa GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.613e-43
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGI+YAVFTDKSI+LLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+L  K RRMGPIM  TMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIRYAVFTDKSIQLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLRGKARRMGPIMGQTMHYRRMIITLQPGYSIPPLRKKRT 93          
The following BLAST results are available for this feature:
BLAST of CV712782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RK23_SINAL3.268e-4492.4750S ribosomal protein L23, chloroplastic OS=Sinapi... [more]
RK23_PHAAO3.268e-4492.4750S ribosomal protein L23, chloroplastic OS=Phalae... [more]
RK23_DRIGR3.268e-4492.4750S ribosomal protein L23, chloroplastic OS=Drimys... [more]
RK23_ARATH3.268e-4492.4750S ribosomal protein L23, chloroplastic OS=Arabid... [more]
RK23_NYMAL7.279e-4490.3250S ribosomal protein L23, chloroplastic OS=Nympha... [more]
RK23_POPAL9.507e-4493.5550S ribosomal protein L23, chloroplastic OS=Populu... [more]
RK23_HELAN1.242e-4392.4750S ribosomal protein L23, chloroplastic OS=Helian... [more]
RK23_GOSHI1.242e-4392.4750S ribosomal protein L23, chloroplastic OS=Gossyp... [more]
RK23_GOSBA1.242e-4392.4750S ribosomal protein L23, chloroplastic OS=Gossyp... [more]
RK23_LACSA3.613e-4391.4050S ribosomal protein L23, chloroplastic OS=Lactuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712782 ID=CV712782; Name=CV712782; organism=Citrus sinensis; type=EST; length=804bp
GAAAGTAGGATACTCCAAATTCGTGGATCCAAGAGTTTTATAAAACGTTC
TTGGTGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCC
ATGAATCTAAGAAATAGTGAGAATTCTTGATCTCTCTCAATATCTCTCTC
AATTCGAAAATCCAGGATTTGAATTGATGTCCTTTCATTGATTCCTCCTA
AATTGCATTGATTTATCCTAAAGATTTCATTTCAATTGAAATTTGGTTAT
TCACCATGTACGAGGATCCCCGCTAAGCATCCATGGCTGAATGGTTAAAG
CGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTACTGGATGCA
CGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATG
GAATCTCATCATCTATACATAACGAATTGGTGTGGTATATTCATATCATA
ACATATGAACAGTAAGAACTAGCATTCTTATTGAGACTCGAACTCATAGG
GAAGAAAATCGATTTATGGATGGAATCAAATATGCAGTATTTACAGACAA
AAGTATTCGGTTATTGGGAAAAAATCAATATACTTCTAATGTCGAATCAG
GATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTC
AAGGTAATTGCTATGAATAGTCATCAACTCCCCCGAAAGGGTAGAAGAAT
GGGACCTATTATGGCACATACAATGCATTACAGACGTATGATCATTACGC
TTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATC
AAAA
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