CV712782

Overview
NameCV712782
Unique NameCV712782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_PHAAN (50S ribosomal protein L23, chloroplastic OS=Phaseolus angularis GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.718e-43
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            M+GIKYAVFTDKSIRLLGKNQYT NVESGSTRTEIKHWVELFF VKVIAMNSH+LP KGRR+ PIM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MNGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFDVKVIAMNSHRLPVKGRRVRPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_ACOCL (50S ribosomal protein L23, chloroplastic OS=Acorus calamus GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.718e-43
Identity = 84/93 (90.32%), Postives = 88/93 (94.62%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFT+KSIRLLG NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP KGRR+GPI  HTMHYRRMIITLQPGYSIPPL +KRT
Sbjct:    1 MDGIKYAVFTEKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRVGPIKGHTMHYRRMIITLQPGYSIPPLIEKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_SOYBN (50S ribosomal protein L23, chloroplastic OS=Glycine max GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.051e-42
Identity = 84/93 (90.32%), Postives = 88/93 (94.62%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            M+GIKYAVFTDKSIRLLGKNQYT NVESGSTRTEIKHWVELFF VKVIAMNSH+LP KGRR+ PIM HTMHYRRMIITLQPGYSIPPLRKK+T
Sbjct:    1 MNGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFDVKVIAMNSHRLPVKGRRVRPIMGHTMHYRRMIITLQPGYSIPPLRKKKT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_LOTJA (50S ribosomal protein L23, chloroplastic OS=Lotus japonicus GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.793e-42
Identity = 84/93 (90.32%), Postives = 88/93 (94.62%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            M+GIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKV AMNSH+LP KGR++  IM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MNGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVKAMNSHRLPAKGRKVRLIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_PIPCE (50S ribosomal protein L23, chloroplastic OS=Piper cenocladum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.058e-42
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKY VFT+KSIRLLG NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+L  KGRRMGPI+ HTMHYRRMIITLQPGYSIPPL +KRT
Sbjct:    1 MDGIKYIVFTEKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLQGKGRRMGPIIGHTMHYRRMIITLQPGYSIPPLIEKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_MORIN (50S ribosomal protein L23, chloroplastic OS=Morus indica GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.162e-41
Identity = 84/93 (90.32%), Postives = 85/93 (91.40%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKY V TDKSIRLL KNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP KGRRMGPIM HTMHYRRMIITLQPGY IPPL KK T
Sbjct:    1 MDGIKYFVVTDKSIRLLLKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYYIPPLIKKST 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_AMBTC (50S ribosomal protein L23, chloroplastic OS=Amborella trichopoda GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.416e-41
Identity = 82/95 (86.32%), Postives = 87/95 (91.58%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQL--PRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFT+KSIRLLG NQYTSNVESGSTR EIKHW+ELFFGVKVIAMNSH+L  P KGRRMGP+M H MHYRRMIITLQPGYSIPPL +KRT
Sbjct:    1 MDGIKYAVFTEKSIRLLGNNQYTSNVESGSTRAEIKHWIELFFGVKVIAMNSHRLPVPGKGRRMGPLMGHRMHYRRMIITLQPGYSIPPLIEKRT 95          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_CALFG (50S ribosomal protein L23, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.285e-40
Identity = 83/93 (89.25%), Postives = 86/93 (92.47%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFT+KSIRLLG NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP KGRRMG    HTMHYRRMIITLQPGYSIPPL +KRT
Sbjct:    1 MDGIKYAVFTEKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMG----HTMHYRRMIITLQPGYSIPPLIEKRT 89          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_LIRTU (50S ribosomal protein L23, chloroplastic OS=Liriodendron tulipifera GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.088e-39
Identity = 81/93 (87.10%), Postives = 84/93 (90.32%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKY VFT+KSIRLL  NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP KG RMGPIM HTMHYRRMIITLQPGYSI  L +KRT
Sbjct:    1 MDGIKYEVFTEKSIRLLENNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGIRMGPIMGHTMHYRRMIITLQPGYSILTLIQKRT 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_WHEAT (50S ribosomal protein L23, chloroplastic OS=Triticum aestivum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.421e-39
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKR 791
            MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIP L +++
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDREK 92          
The following BLAST results are available for this feature:
BLAST of CV712782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RK23_PHAAN4.718e-4391.4050S ribosomal protein L23, chloroplastic OS=Phaseo... [more]
RK23_ACOCL4.718e-4390.3250S ribosomal protein L23, chloroplastic OS=Acorus... [more]
RK23_SOYBN1.051e-4290.3250S ribosomal protein L23, chloroplastic OS=Glycin... [more]
RK23_LOTJA1.793e-4290.3250S ribosomal protein L23, chloroplastic OS=Lotus ... [more]
RK23_PIPCE3.058e-4289.2550S ribosomal protein L23, chloroplastic OS=Piper ... [more]
RK23_MORIN1.162e-4190.3250S ribosomal protein L23, chloroplastic OS=Morus ... [more]
RK23_AMBTC4.416e-4186.3250S ribosomal protein L23, chloroplastic OS=Ambore... [more]
RK23_CALFG1.285e-4089.2550S ribosomal protein L23, chloroplastic OS=Calyca... [more]
RK23_LIRTU1.088e-3987.1050S ribosomal protein L23, chloroplastic OS=Liriod... [more]
RK23_WHEAT1.421e-3982.6150S ribosomal protein L23, chloroplastic OS=Tritic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712782 ID=CV712782; Name=CV712782; organism=Citrus sinensis; type=EST; length=804bp
GAAAGTAGGATACTCCAAATTCGTGGATCCAAGAGTTTTATAAAACGTTC
TTGGTGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCC
ATGAATCTAAGAAATAGTGAGAATTCTTGATCTCTCTCAATATCTCTCTC
AATTCGAAAATCCAGGATTTGAATTGATGTCCTTTCATTGATTCCTCCTA
AATTGCATTGATTTATCCTAAAGATTTCATTTCAATTGAAATTTGGTTAT
TCACCATGTACGAGGATCCCCGCTAAGCATCCATGGCTGAATGGTTAAAG
CGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTACTGGATGCA
CGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATG
GAATCTCATCATCTATACATAACGAATTGGTGTGGTATATTCATATCATA
ACATATGAACAGTAAGAACTAGCATTCTTATTGAGACTCGAACTCATAGG
GAAGAAAATCGATTTATGGATGGAATCAAATATGCAGTATTTACAGACAA
AAGTATTCGGTTATTGGGAAAAAATCAATATACTTCTAATGTCGAATCAG
GATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTC
AAGGTAATTGCTATGAATAGTCATCAACTCCCCCGAAAGGGTAGAAGAAT
GGGACCTATTATGGCACATACAATGCATTACAGACGTATGATCATTACGC
TTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATC
AAAA
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