CV712782
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_ORYSJ (50S ribosomal protein L23, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl23-A PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.421e-39 Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 3 Query: 516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKR 791 MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIP L +++ Sbjct: 1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDREK 92
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_ORYSI (50S ribosomal protein L23, chloroplastic OS=Oryza sativa subsp. indica GN=rpl23-A PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.421e-39 Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 3 Query: 516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKR 791 MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIP L +++ Sbjct: 1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDREK 92
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_ORYSA (50S ribosomal protein L23, chloroplastic OS=Oryza sativa GN=rpl23-A PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.421e-39 Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 3 Query: 516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKR 791 MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIP L +++ Sbjct: 1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDREK 92
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_ORYNI (50S ribosomal protein L23, chloroplastic OS=Oryza nivara GN=rpl23-A PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.421e-39 Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 3 Query: 516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKR 791 MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIP L +++ Sbjct: 1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDREK 92
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_SACOF (50S ribosomal protein L23, chloroplastic OS=Saccharum officinarum GN=rpl23-A PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.423e-39 Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 3 Query: 516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKK 788 MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIP L ++ Sbjct: 1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDRE 91
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_SACHY (50S ribosomal protein L23, chloroplastic OS=Saccharum hybrid GN=rpl23-A PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.423e-39 Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 3 Query: 516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKK 788 MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIP L ++ Sbjct: 1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDRE 91
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_MAIZE (50S ribosomal protein L23, chloroplastic OS=Zea mays GN=rpl23-A PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.423e-39 Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 3 Query: 516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKK 788 MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIP L ++ Sbjct: 1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDRE 91
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23B_SORBI (50S ribosomal protein L23-B, chloroplastic OS=Sorghum bicolor GN=rpl23-B PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.423e-39 Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 3 Query: 516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKK 788 MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIP L ++ Sbjct: 1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDRE 91
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_HORVU (50S ribosomal protein L23, chloroplastic OS=Hordeum vulgare GN=rpl23-A PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 4.133e-39 Identity = 75/92 (81.52%), Postives = 86/92 (93.48%), Query Frame = 3 Query: 516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKR 791 MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRR+GPI+ HTMHYRRMIITLQPGYSIP L +++ Sbjct: 1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRIGPILGHTMHYRRMIITLQPGYSIPLLDREK 92
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23B_AGRST (50S ribosomal protein L23-B, chloroplastic OS=Agrostis stolonifera GN=rpl23-B PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 4.133e-39 Identity = 75/92 (81.52%), Postives = 86/92 (93.48%), Query Frame = 3 Query: 516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKR 791 MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRR+GPI+ HTMHYRRMIITLQPGYSIP L +++ Sbjct: 1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRIGPILGHTMHYRRMIITLQPGYSIPLLDREK 92 The following BLAST results are available for this feature:
BLAST of CV712782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 148
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712782 ID=CV712782; Name=CV712782; organism=Citrus sinensis; type=EST; length=804bpback to top |