CV712782

Overview
NameCV712782
Unique NameCV712782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_ORYSJ (50S ribosomal protein L23, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.421e-39
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKR 791
            MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIP L +++
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDREK 92          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_ORYSI (50S ribosomal protein L23, chloroplastic OS=Oryza sativa subsp. indica GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.421e-39
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKR 791
            MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIP L +++
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDREK 92          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_ORYSA (50S ribosomal protein L23, chloroplastic OS=Oryza sativa GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.421e-39
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKR 791
            MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIP L +++
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDREK 92          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_ORYNI (50S ribosomal protein L23, chloroplastic OS=Oryza nivara GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.421e-39
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKR 791
            MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIP L +++
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDREK 92          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_SACOF (50S ribosomal protein L23, chloroplastic OS=Saccharum officinarum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.423e-39
Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKK 788
            MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIP L ++
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDRE 91          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_SACHY (50S ribosomal protein L23, chloroplastic OS=Saccharum hybrid GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.423e-39
Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKK 788
            MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIP L ++
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDRE 91          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_MAIZE (50S ribosomal protein L23, chloroplastic OS=Zea mays GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.423e-39
Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKK 788
            MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIP L ++
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDRE 91          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23B_SORBI (50S ribosomal protein L23-B, chloroplastic OS=Sorghum bicolor GN=rpl23-B PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.423e-39
Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKK 788
            MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQPGYSIP L ++
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQPGYSIPLLDRE 91          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_HORVU (50S ribosomal protein L23, chloroplastic OS=Hordeum vulgare GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.133e-39
Identity = 75/92 (81.52%), Postives = 86/92 (93.48%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKR 791
            MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRR+GPI+ HTMHYRRMIITLQPGYSIP L +++
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRIGPILGHTMHYRRMIITLQPGYSIPLLDREK 92          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23B_AGRST (50S ribosomal protein L23-B, chloroplastic OS=Agrostis stolonifera GN=rpl23-B PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.133e-39
Identity = 75/92 (81.52%), Postives = 86/92 (93.48%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKR 791
            MDGIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRR+GPI+ HTMHYRRMIITLQPGYSIP L +++
Sbjct:    1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRIGPILGHTMHYRRMIITLQPGYSIPLLDREK 92          
The following BLAST results are available for this feature:
BLAST of CV712782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RK23_ORYSJ1.421e-3982.6150S ribosomal protein L23, chloroplastic OS=Oryza ... [more]
RK23_ORYSI1.421e-3982.6150S ribosomal protein L23, chloroplastic OS=Oryza ... [more]
RK23_ORYSA1.421e-3982.6150S ribosomal protein L23, chloroplastic OS=Oryza ... [more]
RK23_ORYNI1.421e-3982.6150S ribosomal protein L23, chloroplastic OS=Oryza ... [more]
RK23_SACOF2.423e-3983.5250S ribosomal protein L23, chloroplastic OS=Saccha... [more]
RK23_SACHY2.423e-3983.5250S ribosomal protein L23, chloroplastic OS=Saccha... [more]
RK23_MAIZE2.423e-3983.5250S ribosomal protein L23, chloroplastic OS=Zea ma... [more]
RK23B_SORBI2.423e-3983.5250S ribosomal protein L23-B, chloroplastic OS=Sorg... [more]
RK23_HORVU4.133e-3981.5250S ribosomal protein L23, chloroplastic OS=Hordeu... [more]
RK23B_AGRST4.133e-3981.5250S ribosomal protein L23-B, chloroplastic OS=Agro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712782 ID=CV712782; Name=CV712782; organism=Citrus sinensis; type=EST; length=804bp
GAAAGTAGGATACTCCAAATTCGTGGATCCAAGAGTTTTATAAAACGTTC
TTGGTGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCC
ATGAATCTAAGAAATAGTGAGAATTCTTGATCTCTCTCAATATCTCTCTC
AATTCGAAAATCCAGGATTTGAATTGATGTCCTTTCATTGATTCCTCCTA
AATTGCATTGATTTATCCTAAAGATTTCATTTCAATTGAAATTTGGTTAT
TCACCATGTACGAGGATCCCCGCTAAGCATCCATGGCTGAATGGTTAAAG
CGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTACTGGATGCA
CGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATG
GAATCTCATCATCTATACATAACGAATTGGTGTGGTATATTCATATCATA
ACATATGAACAGTAAGAACTAGCATTCTTATTGAGACTCGAACTCATAGG
GAAGAAAATCGATTTATGGATGGAATCAAATATGCAGTATTTACAGACAA
AAGTATTCGGTTATTGGGAAAAAATCAATATACTTCTAATGTCGAATCAG
GATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTC
AAGGTAATTGCTATGAATAGTCATCAACTCCCCCGAAAGGGTAGAAGAAT
GGGACCTATTATGGCACATACAATGCATTACAGACGTATGATCATTACGC
TTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATC
AAAA
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