CV712782

Overview
NameCV712782
Unique NameCV712782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23A_AGRST (50S ribosomal protein L23-A, chloroplastic OS=Agrostis stolonifera GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.962e-37
Identity = 72/91 (79.12%), Postives = 84/91 (92.31%), Query Frame = 3
Query:  519 DGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKR 791
            +GIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRR+GPI+ HTMHYRRMII LQPGYSIP L +++
Sbjct:    3 NGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRIGPILGHTMHYRRMIIILQPGYSIPLLDREK 93          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK232_SPIOL (Putative 50S ribosomal protein L23, chloroplastic OS=Spinacia oleracea GN=rpl23 PE=5 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.470e-36
Identity = 77/93 (82.80%), Postives = 81/93 (87.10%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSI+LLGK QYTSNVES STRTEIKHWVEL+   +   MNSH+LP KGRRMGPIM HTMHYRRMIITLQ  YSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIQLLGKKQYTSNVESRSTRTEIKHWVELWNSYE---MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQSSYSIPPLRKKRT 90          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_PELHO (50S ribosomal protein L23, chloroplastic OS=Pelargonium hortorum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.797e-34
Identity = 74/88 (84.09%), Postives = 77/88 (87.50%), Query Frame = 3
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPL 779
            MDGIKYAV TDKS+RL+ KNQYT NVESGSTRTEIK WVELFFGVKVIAMNSH+LP K RRMG    HTMHYRRMIITLQPGYSIP L
Sbjct:    1 MDGIKYAVVTDKSLRLVSKNQYTFNVESGSTRTEIKSWVELFFGVKVIAMNSHRLPGKRRRMG----HTMHYRRMIITLQPGYSIPSL 84          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23A_SORBI (50S ribosomal protein L23-A, chloroplastic OS=Sorghum bicolor GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.065e-34
Identity = 68/81 (83.95%), Postives = 76/81 (93.83%), Query Frame = 3
Query:  519 DGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPG 761
            +GIKYAVFT+KS+RLLGKNQYT NVESG T+TEIKHWVELFFGVKV+A+NSH+LP KGRRMGPI+ HTMHYRRMIITLQ G
Sbjct:    3 NGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRLPGKGRRMGPILGHTMHYRRMIITLQLG 83          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_GOSHI (Protein ycf2 OS=Gossypium hirsutum GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.230e-31
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL
Sbjct:    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 62          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_GOSBA (Protein ycf2 OS=Gossypium barbadense GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.230e-31
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL
Sbjct:    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 62          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_CITSI (Protein ycf2 OS=Citrus sinensis GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.230e-31
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL
Sbjct:    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 62          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_CARPA (Protein ycf2 OS=Carica papaya GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.230e-31
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL
Sbjct:    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 62          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_COFAR (Protein ycf2 OS=Coffea arabica GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.685e-30
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKL DPRIWSILL
Sbjct:    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILL 62          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_EUCGG (Protein ycf2 OS=Eucalyptus globulus subsp. globulus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.507e-30
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREILREIKNSH+FLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL
Sbjct:    1 MKGHQFKSWIFELREILREIKNSHHFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 62          
The following BLAST results are available for this feature:
BLAST of CV712782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RK23A_AGRST2.962e-3779.1250S ribosomal protein L23-A, chloroplastic OS=Agro... [more]
RK232_SPIOL1.470e-3682.80Putative 50S ribosomal protein L23, chloroplastic ... [more]
RK23_PELHO1.797e-3484.0950S ribosomal protein L23, chloroplastic OS=Pelarg... [more]
RK23A_SORBI3.065e-3483.9550S ribosomal protein L23-A, chloroplastic OS=Sorg... [more]
YCF2_GOSHI9.230e-31100.00Protein ycf2 OS=Gossypium hirsutum GN=ycf2-A PE=3 ... [more]
YCF2_GOSBA9.230e-31100.00Protein ycf2 OS=Gossypium barbadense GN=ycf2-A PE=... [more]
YCF2_CITSI9.230e-31100.00Protein ycf2 OS=Citrus sinensis GN=ycf2-A PE=3 SV=... [more]
YCF2_CARPA9.230e-31100.00Protein ycf2 OS=Carica papaya GN=ycf2-A PE=3 SV=1[more]
YCF2_COFAR2.685e-3098.39Protein ycf2 OS=Coffea arabica GN=ycf2-A PE=3 SV=1[more]
YCF2_EUCGG3.507e-3098.39Protein ycf2 OS=Eucalyptus globulus subsp. globulu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712782 ID=CV712782; Name=CV712782; organism=Citrus sinensis; type=EST; length=804bp
GAAAGTAGGATACTCCAAATTCGTGGATCCAAGAGTTTTATAAAACGTTC
TTGGTGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCC
ATGAATCTAAGAAATAGTGAGAATTCTTGATCTCTCTCAATATCTCTCTC
AATTCGAAAATCCAGGATTTGAATTGATGTCCTTTCATTGATTCCTCCTA
AATTGCATTGATTTATCCTAAAGATTTCATTTCAATTGAAATTTGGTTAT
TCACCATGTACGAGGATCCCCGCTAAGCATCCATGGCTGAATGGTTAAAG
CGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTACTGGATGCA
CGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATG
GAATCTCATCATCTATACATAACGAATTGGTGTGGTATATTCATATCATA
ACATATGAACAGTAAGAACTAGCATTCTTATTGAGACTCGAACTCATAGG
GAAGAAAATCGATTTATGGATGGAATCAAATATGCAGTATTTACAGACAA
AAGTATTCGGTTATTGGGAAAAAATCAATATACTTCTAATGTCGAATCAG
GATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTC
AAGGTAATTGCTATGAATAGTCATCAACTCCCCCGAAAGGGTAGAAGAAT
GGGACCTATTATGGCACATACAATGCATTACAGACGTATGATCATTACGC
TTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATC
AAAA
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