CV712782

Overview
NameCV712782
Unique NameCV712782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_VITVI (Protein ycf2 OS=Vitis vinifera GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.333e-29
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREILREIKNSHYFLDSWTQF SVGSFIHIFFHQERFIKL DPRIWSILL
Sbjct:    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFTSVGSFIHIFFHQERFIKLFDPRIWSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_AETGR (Protein ycf2 OS=Aethionema grandiflora GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.333e-29
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREI+REIKNSHYFLDSWTQFNSVGSFIHIFFHQERF KLLDPRIWSILL
Sbjct:    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIWSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_SPIOL (Protein ycf2 OS=Spinacia oleracea GN=ycf2-A PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.273e-29
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFF+QERF+KL DPRIWSILL
Sbjct:    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFYQERFLKLFDPRIWSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_POPTR (Protein ycf2 OS=Populus trichocarpa GN=ycf2-1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.273e-29
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = -2 
Query:    6 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSIL 188
            MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLD RIWSIL
Sbjct:    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDSRIWSIL 61
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_POPAL (Protein ycf2 OS=Populus alba GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.273e-29
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = -2 
Query:    6 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSIL 188
            MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLD RIWSIL
Sbjct:    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDSRIWSIL 61
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_SOLTU (Protein ycf2 OS=Solanum tuberosum GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.878e-29
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            M+GHQFKSWIFELREILREIKNSH+FLDSWTQFNSVGSFIHIFFHQERF+KL DPRIWSILL
Sbjct:    1 MRGHQFKSWIFELREILREIKNSHHFLDSWTQFNSVGSFIHIFFHQERFLKLFDPRIWSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_SOLLC (Protein ycf2 OS=Solanum lycopersicum GN=ycf2-A PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.878e-29
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            M+GHQFKSWIFELREILREIKNSH+FLDSWTQFNSVGSFIHIFFHQERF+KL DPRIWSILL
Sbjct:    1 MRGHQFKSWIFELREILREIKNSHHFLDSWTQFNSVGSFIHIFFHQERFLKLFDPRIWSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_SOLBU (Protein ycf2 OS=Solanum bulbocastanum GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.878e-29
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            M+GHQFKSWIFELREILREIKNSH+FLDSWTQFNSVGSFIHIFFHQERF+KL DPRIWSILL
Sbjct:    1 MRGHQFKSWIFELREILREIKNSHHFLDSWTQFNSVGSFIHIFFHQERFLKLFDPRIWSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_NICTO (Protein ycf2 OS=Nicotiana tomentosiformis GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.878e-29
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            M+GHQFKSWIFELREILREIKNSH+FLDSWTQFNSVGSFIHIFFHQERF+KL DPRIWSILL
Sbjct:    1 MRGHQFKSWIFELREILREIKNSHHFLDSWTQFNSVGSFIHIFFHQERFLKLFDPRIWSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_DAUCA (Protein ycf2 OS=Daucus carota GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.064e-29
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFK WIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQE FIKL DPRIWSILL
Sbjct:    1 MKGHQFKFWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQEHFIKLFDPRIWSILL 62
The following BLAST results are available for this feature:
BLAST of CV712782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
YCF2_VITVI1.333e-2996.77Protein ycf2 OS=Vitis vinifera GN=ycf2-A PE=3 SV=1[more]
YCF2_AETGR1.333e-2996.77Protein ycf2 OS=Aethionema grandiflora GN=ycf2-A P... [more]
YCF2_SPIOL2.273e-2995.16Protein ycf2 OS=Spinacia oleracea GN=ycf2-A PE=3 S... [more]
YCF2_POPTR2.273e-2998.36Protein ycf2 OS=Populus trichocarpa GN=ycf2-1 PE=3... [more]
YCF2_POPAL2.273e-2998.36Protein ycf2 OS=Populus alba GN=ycf2-A PE=3 SV=1[more]
YCF2_SOLTU3.878e-2993.55Protein ycf2 OS=Solanum tuberosum GN=ycf2-A PE=3 S... [more]
YCF2_SOLLC3.878e-2993.55Protein ycf2 OS=Solanum lycopersicum GN=ycf2-A PE=... [more]
YCF2_SOLBU3.878e-2993.55Protein ycf2 OS=Solanum bulbocastanum GN=ycf2-A PE... [more]
YCF2_NICTO3.878e-2993.55Protein ycf2 OS=Nicotiana tomentosiformis GN=ycf2-... [more]
YCF2_DAUCA5.064e-2995.16Protein ycf2 OS=Daucus carota GN=ycf2-A PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712782 ID=CV712782; Name=CV712782; organism=Citrus sinensis; type=EST; length=804bp
GAAAGTAGGATACTCCAAATTCGTGGATCCAAGAGTTTTATAAAACGTTC
TTGGTGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCC
ATGAATCTAAGAAATAGTGAGAATTCTTGATCTCTCTCAATATCTCTCTC
AATTCGAAAATCCAGGATTTGAATTGATGTCCTTTCATTGATTCCTCCTA
AATTGCATTGATTTATCCTAAAGATTTCATTTCAATTGAAATTTGGTTAT
TCACCATGTACGAGGATCCCCGCTAAGCATCCATGGCTGAATGGTTAAAG
CGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTACTGGATGCA
CGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATG
GAATCTCATCATCTATACATAACGAATTGGTGTGGTATATTCATATCATA
ACATATGAACAGTAAGAACTAGCATTCTTATTGAGACTCGAACTCATAGG
GAAGAAAATCGATTTATGGATGGAATCAAATATGCAGTATTTACAGACAA
AAGTATTCGGTTATTGGGAAAAAATCAATATACTTCTAATGTCGAATCAG
GATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTC
AAGGTAATTGCTATGAATAGTCATCAACTCCCCCGAAAGGGTAGAAGAAT
GGGACCTATTATGGCACATACAATGCATTACAGACGTATGATCATTACGC
TTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATC
AAAA
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