CV712782

Overview
NameCV712782
Unique NameCV712782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_TOBAC (Protein ycf2 OS=Nicotiana tabacum GN=ycf2-A PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.128e-28
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            M+GHQFKSWIFELREILREIKNSH+FLDSWTQFNS GSFIHIFFHQERF+KL DPRIWSILL
Sbjct:    1 MRGHQFKSWIFELREILREIKNSHHFLDSWTQFNSAGSFIHIFFHQERFLKLFDPRIWSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_NICSY (Protein ycf2 OS=Nicotiana sylvestris GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.128e-28
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            M+GHQFKSWIFELREILREIKNSH+FLDSWTQFNS GSFIHIFFHQERF+KL DPRIWSILL
Sbjct:    1 MRGHQFKSWIFELREILREIKNSHHFLDSWTQFNSAGSFIHIFFHQERFLKLFDPRIWSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_DRANE (Protein ycf2 OS=Draba nemorosa GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.474e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREI+REIKNSHYFLDSWTQFNSVGSFIHIFFHQERF KLLDPRI+SILL
Sbjct:    1 MKGHQFKSWIFELREIMREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIFSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_OLIPU (Protein ycf2 OS=Olimarabidopsis pumila GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.925e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREI+REIKNSHYFLDSWTQFNSVGSFIHIFFHQERF KLLDPRI+SILL
Sbjct:    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIFSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_NASOF (Protein ycf2 OS=Nasturtium officinale GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.925e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREI+REIKNSHYFLDSWTQFNSVGSFIHIFFHQERF KLLDPRI+SILL
Sbjct:    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIFSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_LOBMA (Protein ycf2 OS=Lobularia maritima GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.925e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREI+REIKNSHYFLDSWTQFNSVGSFIHIFFHQERF KLLDPRI+SILL
Sbjct:    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIFSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_LEPVR (Protein ycf2 OS=Lepidium virginicum GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.925e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREI+REIKNSHYFLDSWTQFNSVGSFIHIFFHQERF KLLDPRI+SILL
Sbjct:    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIFSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_CAPBU (Protein ycf2 OS=Capsella bursa-pastoris GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.925e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREI+REIKNSHYFLDSWTQFNSVGSFIHIFFHQERF KLLDPRI+SILL
Sbjct:    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIFSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2B_CRUWA (Protein ycf2 B OS=Crucihimalaya wallichii GN=ycf2-B PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.925e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREI+REIKNSHYFLDSWTQFNSVGSFIHIFFHQERF KLLDPRI+SILL
Sbjct:    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIFSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2A_CRUWA (Protein ycf2 A OS=Crucihimalaya wallichii GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.925e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREI+REIKNSHYFLDSWTQFNSVGSFIHIFFHQERF KLLDPRI+SILL
Sbjct:    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIFSILL 62
The following BLAST results are available for this feature:
BLAST of CV712782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
YCF2_TOBAC1.128e-2891.94Protein ycf2 OS=Nicotiana tabacum GN=ycf2-A PE=3 S... [more]
YCF2_NICSY1.128e-2891.94Protein ycf2 OS=Nicotiana sylvestris GN=ycf2-A PE=... [more]
YCF2_DRANE1.474e-2895.16Protein ycf2 OS=Draba nemorosa GN=ycf2-A PE=3 SV=1[more]
YCF2_OLIPU1.925e-2895.16Protein ycf2 OS=Olimarabidopsis pumila GN=ycf2-A P... [more]
YCF2_NASOF1.925e-2895.16Protein ycf2 OS=Nasturtium officinale GN=ycf2-A PE... [more]
YCF2_LOBMA1.925e-2895.16Protein ycf2 OS=Lobularia maritima GN=ycf2-A PE=3 ... [more]
YCF2_LEPVR1.925e-2895.16Protein ycf2 OS=Lepidium virginicum GN=ycf2-A PE=3... [more]
YCF2_CAPBU1.925e-2895.16Protein ycf2 OS=Capsella bursa-pastoris GN=ycf2-A ... [more]
YCF2B_CRUWA1.925e-2895.16Protein ycf2 B OS=Crucihimalaya wallichii GN=ycf2-... [more]
YCF2A_CRUWA1.925e-2895.16Protein ycf2 A OS=Crucihimalaya wallichii GN=ycf2-... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712782 ID=CV712782; Name=CV712782; organism=Citrus sinensis; type=EST; length=804bp
GAAAGTAGGATACTCCAAATTCGTGGATCCAAGAGTTTTATAAAACGTTC
TTGGTGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCC
ATGAATCTAAGAAATAGTGAGAATTCTTGATCTCTCTCAATATCTCTCTC
AATTCGAAAATCCAGGATTTGAATTGATGTCCTTTCATTGATTCCTCCTA
AATTGCATTGATTTATCCTAAAGATTTCATTTCAATTGAAATTTGGTTAT
TCACCATGTACGAGGATCCCCGCTAAGCATCCATGGCTGAATGGTTAAAG
CGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTACTGGATGCA
CGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATG
GAATCTCATCATCTATACATAACGAATTGGTGTGGTATATTCATATCATA
ACATATGAACAGTAAGAACTAGCATTCTTATTGAGACTCGAACTCATAGG
GAAGAAAATCGATTTATGGATGGAATCAAATATGCAGTATTTACAGACAA
AAGTATTCGGTTATTGGGAAAAAATCAATATACTTCTAATGTCGAATCAG
GATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTC
AAGGTAATTGCTATGAATAGTCATCAACTCCCCCGAAAGGGTAGAAGAAT
GGGACCTATTATGGCACATACAATGCATTACAGACGTATGATCATTACGC
TTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATC
AAAA
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