CV712782

Overview
NameCV712782
Unique NameCV712782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_PIPCE (Protein ycf2 OS=Piper cenocladum GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.283e-28
Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQF+SWIFELREILRE+KNSHYFLDSWTQF+SVGSF HIFFHQERF+KL DPRIWSILL
Sbjct:    1 MKGHQFQSWIFELREILREVKNSHYFLDSWTQFDSVGSFTHIFFHQERFMKLFDPRIWSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_MORIN (Protein ycf2 OS=Morus indica GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.287e-28
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREILREIKNSHYFLDSWTQ NSV SFIHIFFHQERFIKLLD RIWSILL
Sbjct:    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQLNSVVSFIHIFFHQERFIKLLDSRIWSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_ARATH (Protein ycf2 OS=Arabidopsis thaliana GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.287e-28
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREI+REIKN+HYFLDSWTQFNSVGSFIHIFFHQERF KLLDPRI+SILL
Sbjct:    1 MKGHQFKSWIFELREIVREIKNAHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRIFSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_ARAHI (Protein ycf2 OS=Arabis hirsuta GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.287e-28
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREI+REIKNSHYFLDSWTQFNSVGSFIHIFFHQERF KLLDPRI SILL
Sbjct:    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRILSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_AETCO (Protein ycf2 OS=Aethionema cordifolium GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.287e-28
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREI+REIKNSHYFLDSWTQFNSVGSFIHIFFHQERF KLLDPRI SILL
Sbjct:    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFRKLLDPRILSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_PANGI (Protein ycf2 OS=Panax ginseng GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.599e-28
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREILREIKNSHYFLDS TQFNSVGSF HIFFHQERFIKL DPRIWSILL
Sbjct:    1 MKGHQFKSWIFELREILREIKNSHYFLDSRTQFNSVGSFSHIFFHQERFIKLFDPRIWSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_BARVE (Protein ycf2 OS=Barbarea verna GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.313e-28
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREI+REIKNSHYFLDSWTQF+SVGSFIHIFFHQERF KLLDPRI+SILL
Sbjct:    1 MKGHQFKSWIFELREIVREIKNSHYFLDSWTQFDSVGSFIHIFFHQERFRKLLDPRIFSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_PLAOC (Protein ycf2 OS=Platanus occidentalis GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.551e-28
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MK HQFKSWIFELREILREIKNSHYFLDSWT+F+SVGSF HIFFHQERFIKL DPRIWSILL
Sbjct:    1 MKRHQFKSWIFELREILREIKNSHYFLDSWTKFDSVGSFTHIFFHQERFIKLFDPRIWSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2B_ATRBE (Protein ycf2 B OS=Atropa belladonna GN=ycf2-B PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.551e-28
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            M+GHQFKSWI ELREILREIKNSH+FLDSWTQF SVGSFIHIFFHQERF+KL DPRIWSILL
Sbjct:    1 MRGHQFKSWILELREILREIKNSHHFLDSWTQFTSVGSFIHIFFHQERFLKLFDPRIWSILL 62
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2A_ATRBE (Protein ycf2 A OS=Atropa belladonna GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.551e-28
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = -2 
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            M+GHQFKSWI ELREILREIKNSH+FLDSWTQF SVGSFIHIFFHQERF+KL DPRIWSILL
Sbjct:    1 MRGHQFKSWILELREILREIKNSHHFLDSWTQFTSVGSFIHIFFHQERFLKLFDPRIWSILL 62
The following BLAST results are available for this feature:
BLAST of CV712782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
YCF2_PIPCE3.283e-2890.32Protein ycf2 OS=Piper cenocladum GN=ycf2-A PE=3 SV... [more]
YCF2_MORIN4.287e-2895.16Protein ycf2 OS=Morus indica GN=ycf2-A PE=3 SV=1[more]
YCF2_ARATH4.287e-2893.55Protein ycf2 OS=Arabidopsis thaliana GN=ycf2-A PE=... [more]
YCF2_ARAHI4.287e-2895.16Protein ycf2 OS=Arabis hirsuta GN=ycf2-A PE=3 SV=1[more]
YCF2_AETCO4.287e-2895.16Protein ycf2 OS=Aethionema cordifolium GN=ycf2-A P... [more]
YCF2_PANGI5.599e-2895.16Protein ycf2 OS=Panax ginseng GN=ycf2-A PE=3 SV=1[more]
YCF2_BARVE7.313e-2893.55Protein ycf2 OS=Barbarea verna GN=ycf2-A PE=3 SV=1[more]
YCF2_PLAOC9.551e-2891.94Protein ycf2 OS=Platanus occidentalis GN=ycf2-A PE... [more]
YCF2B_ATRBE9.551e-2890.32Protein ycf2 B OS=Atropa belladonna GN=ycf2-B PE=3... [more]
YCF2A_ATRBE9.551e-2890.32Protein ycf2 A OS=Atropa belladonna GN=ycf2-A PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712782 ID=CV712782; Name=CV712782; organism=Citrus sinensis; type=EST; length=804bp
GAAAGTAGGATACTCCAAATTCGTGGATCCAAGAGTTTTATAAAACGTTC
TTGGTGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCC
ATGAATCTAAGAAATAGTGAGAATTCTTGATCTCTCTCAATATCTCTCTC
AATTCGAAAATCCAGGATTTGAATTGATGTCCTTTCATTGATTCCTCCTA
AATTGCATTGATTTATCCTAAAGATTTCATTTCAATTGAAATTTGGTTAT
TCACCATGTACGAGGATCCCCGCTAAGCATCCATGGCTGAATGGTTAAAG
CGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTACTGGATGCA
CGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATG
GAATCTCATCATCTATACATAACGAATTGGTGTGGTATATTCATATCATA
ACATATGAACAGTAAGAACTAGCATTCTTATTGAGACTCGAACTCATAGG
GAAGAAAATCGATTTATGGATGGAATCAAATATGCAGTATTTACAGACAA
AAGTATTCGGTTATTGGGAAAAAATCAATATACTTCTAATGTCGAATCAG
GATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTC
AAGGTAATTGCTATGAATAGTCATCAACTCCCCCGAAAGGGTAGAAGAAT
GGGACCTATTATGGCACATACAATGCATTACAGACGTATGATCATTACGC
TTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATC
AAAA
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