CV712782

Overview
NameCV712782
Unique NameCV712782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_LACSA (Protein ycf2 OS=Lactuca sativa GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.247e-27
Identity = 57/62 (91.94%), Postives = 58/62 (93.55%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            M GH+FKSWI ELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKL D RIWSILL
Sbjct:    1 MTGHEFKSWILELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDSRIWSILL 62          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_HELAN (Protein ycf2 OS=Helianthus annuus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.247e-27
Identity = 57/62 (91.94%), Postives = 58/62 (93.55%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            M GH+FKSWI ELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKL D RIWSILL
Sbjct:    1 MTGHEFKSWILELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDSRIWSILL 62          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_GUIAB (Protein ycf2 OS=Guizotia abyssinica GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.247e-27
Identity = 57/62 (91.94%), Postives = 58/62 (93.55%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            M GH+FKSWI ELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKL D RIWSILL
Sbjct:    1 MTGHEFKSWILELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDSRIWSILL 62          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_DRIGR (Protein ycf2 OS=Drimys granadensis GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.128e-27
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MK HQFKSWIFELREILREIKNSHYFLDSWT+F+SVGSF HIFFHQERF+KL DPRIWSILL
Sbjct:    1 MKRHQFKSWIFELREILREIKNSHYFLDSWTKFDSVGSFTHIFFHQERFMKLFDPRIWSILL 62          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_SOYBN (Protein ycf2 OS=Glycine max GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.740e-27
Identity = 57/62 (91.94%), Postives = 57/62 (91.94%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREILREIKNS YFLDSWTQFNS G FIHIFFHQE FIKLLD RIWSILL
Sbjct:    1 MKGHQFKSWIFELREILREIKNSRYFLDSWTQFNSAGFFIHIFFHQESFIKLLDSRIWSILL 62          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_NANDO (Protein ycf2 OS=Nandina domestica GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.191e-27
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = -2
Query:    3 EESMKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 197
            +E+ K H FKSWIFELREILREIKNSHYFLDSWT+F+SVGSF HIFFHQERF+KL DPRIWSILL
Sbjct:    3 QEAAKRHPFKSWIFELREILREIKNSHYFLDSWTKFDSVGSFTHIFFHQERFMKLFDPRIWSILL 67          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_AMBTC (Protein ycf2 OS=Amborella trichopoda GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.086e-27
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQ KSWIFELREILREIKNSHYFLDSWT+ N VGSF HIFFHQERF+KL DPRIWSILL
Sbjct:    1 MKGHQLKSWIFELREILREIKNSHYFLDSWTKLNLVGSFTHIFFHQERFMKLFDPRIWSILL 62          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_PHAAO (Protein ycf2 OS=Phalaenopsis aphrodite subsp. formosana GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.056e-26
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MK HQFKSWIFELREILREIKNSHYFLDSW +F+SVGSF HIFFHQERF+KL DPRIWSILL
Sbjct:    1 MKRHQFKSWIFELREILREIKNSHYFLDSWIKFDSVGSFTHIFFHQERFMKLFDPRIWSILL 62          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_LOTJA (Protein ycf2 OS=Lotus japonicus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.353e-26
Identity = 56/62 (90.32%), Postives = 57/62 (91.94%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MKGHQFKSWIFELREIL+EIKNS YFL SWTQFNS GSFIHIFFHQE FIKLLD RIWSILL
Sbjct:    1 MKGHQFKSWIFELREILKEIKNSRYFLYSWTQFNSTGSFIHIFFHQESFIKLLDSRIWSILL 62          
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: YCF2_RANMC (Protein ycf2 OS=Ranunculus macranthus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.241e-26
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = -2
Query:    3 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLLDPRIWSILL 188
            MK H  KSWIFELREILREIKNSHYFLDSWT+F+SVGSF HIFFHQERF+KL DPRIWSILL
Sbjct:    1 MKRHPLKSWIFELREILREIKNSHYFLDSWTKFDSVGSFTHIFFHQERFMKLFDPRIWSILL 62          
The following BLAST results are available for this feature:
BLAST of CV712782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
YCF2_LACSA1.247e-2791.94Protein ycf2 OS=Lactuca sativa GN=ycf2-A PE=3 SV=1[more]
YCF2_HELAN1.247e-2791.94Protein ycf2 OS=Helianthus annuus GN=ycf2-A PE=3 S... [more]
YCF2_GUIAB1.247e-2791.94Protein ycf2 OS=Guizotia abyssinica GN=ycf2-A PE=3... [more]
YCF2_DRIGR2.128e-2790.32Protein ycf2 OS=Drimys granadensis GN=ycf2-A PE=3 ... [more]
YCF2_SOYBN4.740e-2791.94Protein ycf2 OS=Glycine max GN=ycf2-A PE=3 SV=1[more]
YCF2_NANDO6.191e-2784.62Protein ycf2 OS=Nandina domestica GN=ycf2-A PE=3 S... [more]
YCF2_AMBTC8.086e-2788.71Protein ycf2 OS=Amborella trichopoda GN=ycf2-A PE=... [more]
YCF2_PHAAO1.056e-2688.71Protein ycf2 OS=Phalaenopsis aphrodite subsp. form... [more]
YCF2_LOTJA2.353e-2690.32Protein ycf2 OS=Lotus japonicus GN=ycf2-A PE=3 SV=... [more]
YCF2_RANMC5.241e-2687.10Protein ycf2 OS=Ranunculus macranthus GN=ycf2-A PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712782 ID=CV712782; Name=CV712782; organism=Citrus sinensis; type=EST; length=804bp
GAAAGTAGGATACTCCAAATTCGTGGATCCAAGAGTTTTATAAAACGTTC
TTGGTGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCC
ATGAATCTAAGAAATAGTGAGAATTCTTGATCTCTCTCAATATCTCTCTC
AATTCGAAAATCCAGGATTTGAATTGATGTCCTTTCATTGATTCCTCCTA
AATTGCATTGATTTATCCTAAAGATTTCATTTCAATTGAAATTTGGTTAT
TCACCATGTACGAGGATCCCCGCTAAGCATCCATGGCTGAATGGTTAAAG
CGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTACTGGATGCA
CGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATG
GAATCTCATCATCTATACATAACGAATTGGTGTGGTATATTCATATCATA
ACATATGAACAGTAAGAACTAGCATTCTTATTGAGACTCGAACTCATAGG
GAAGAAAATCGATTTATGGATGGAATCAAATATGCAGTATTTACAGACAA
AAGTATTCGGTTATTGGGAAAAAATCAATATACTTCTAATGTCGAATCAG
GATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTC
AAGGTAATTGCTATGAATAGTCATCAACTCCCCCGAAAGGGTAGAAGAAT
GGGACCTATTATGGCACATACAATGCATTACAGACGTATGATCATTACGC
TTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATC
AAAA
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