CV712781

Overview
NameCV712781
Unique NameCV712781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_TOBAC (30S ribosomal protein S19, chloroplastic OS=Nicotiana tabacum GN=rps19 PE=3 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 8.542e-45
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_SOLTU (30S ribosomal protein S19, chloroplastic OS=Solanum tuberosum GN=rps19 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.542e-45
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_SOLLC (30S ribosomal protein S19, chloroplastic OS=Solanum lycopersicum GN=rps19 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.542e-45
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_SOLBU (30S ribosomal protein S19, chloroplastic OS=Solanum bulbocastanum GN=rps19 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.542e-45
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_NICSY (30S ribosomal protein S19, chloroplastic OS=Nicotiana sylvestris GN=rps19 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.542e-45
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_ATRBE (30S ribosomal protein S19, chloroplastic OS=Atropa belladonna GN=rps19 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.542e-45
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_POPTR (30S ribosomal protein S19, chloroplastic OS=Populus trichocarpa GN=rps19-1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.116e-44
Identity = 83/92 (90.22%), Postives = 91/92 (98.91%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLLRKI+KLNTKAEK +I+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDN+SRR
Sbjct:    1 MTRSLKKNPFVANHLLRKINKLNTKAEKNLIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNKSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_POPAL (30S ribosomal protein S19, chloroplastic OS=Populus alba GN=rps19 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.116e-44
Identity = 83/92 (90.22%), Postives = 91/92 (98.91%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLLRKI+KLNTKAEK +I+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDN+SRR
Sbjct:    1 MTRSLKKNPFVANHLLRKINKLNTKAEKNLIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNKSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_GOSHI (30S ribosomal protein S19, chloroplastic OS=Gossypium hirsutum GN=rps19 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.116e-44
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            + RSLKKNPFVANHLL+KI++LNTKAEKEIIITWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPTINFRGHAKNDN+SRR
Sbjct:    1 MARSLKKNPFVANHLLKKIERLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNKSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_GOSBA (30S ribosomal protein S19, chloroplastic OS=Gossypium barbadense GN=rps19 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.116e-44
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            + RSLKKNPFVANHLL+KI++LNTKAEKEIIITWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPTINFRGHAKNDN+SRR
Sbjct:    1 MARSLKKNPFVANHLLKKIERLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNKSRR 92
The following BLAST results are available for this feature:
BLAST of CV712781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_TOBAC8.542e-4591.3030S ribosomal protein S19, chloroplastic OS=Nicoti... [more]
RR19_SOLTU8.542e-4591.3030S ribosomal protein S19, chloroplastic OS=Solanu... [more]
RR19_SOLLC8.542e-4591.3030S ribosomal protein S19, chloroplastic OS=Solanu... [more]
RR19_SOLBU8.542e-4591.3030S ribosomal protein S19, chloroplastic OS=Solanu... [more]
RR19_NICSY8.542e-4591.3030S ribosomal protein S19, chloroplastic OS=Nicoti... [more]
RR19_ATRBE8.542e-4591.3030S ribosomal protein S19, chloroplastic OS=Atropa... [more]
RR19_POPTR1.116e-4490.2230S ribosomal protein S19, chloroplastic OS=Populu... [more]
RR19_POPAL1.116e-4490.2230S ribosomal protein S19, chloroplastic OS=Populu... [more]
RR19_GOSHI1.116e-4491.3030S ribosomal protein S19, chloroplastic OS=Gossyp... [more]
RR19_GOSBA1.116e-4491.3030S ribosomal protein S19, chloroplastic OS=Gossyp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712781 ID=CV712781; Name=CV712781; organism=Citrus sinensis; type=EST; length=802bp
CCCCTCGAGGTTTTAATCTTTTCGCAGTAGGACCCATAGCTATTCGGCTT
TAATAATGAATAAACTTCCTTCGTTGAAACCCAGATTGTGAATACCATTT
GCTGCTGCAGAATAAACCAATTTTAAAATGGGATAACATGCTCGATAAGG
CATGAGTTCGAGTATCATAAGGGTTTCCTCGTAAGAACGTCCACGAATCT
GATCAATTACCCTTCGGGCTTTGTGAGCAGACATACATATATGTTGACCT
AAAGCAGATACTTCTACCTTCTTCTTTATTATCCTTATCATAAGGTTCAC
CTCTCACCAATGAATCTATATTCACTTTATTAACGACGGGATCTATTATC
ATTTTTTGCATGTCCACGGAAATTGATAGTGGGCGCAAATTCTCCCAATT
TATGTCCTACCATACGATCTGTTATATAAATAGGCAAATGCTCCCTTCCA
TTATGGATAGCAATAGTATGGCCGACCATTGTGGGTATAATGGTAGATGC
CCGGGACCAAGTTATTATTATTTCTTTTTCCGCTTTTGTATTAAGCTTAT
CGATTTTTCTTAATAAATGATTCGCTACAAAAGGATTTTTTTTTAGTGAA
CGTGTCACAGTTAATTAACTCCTATTTTTTTCTTTTTTTTTTGTAAATTG
TAAAAACGAAGAAAAAAATTCGATTTTCTCTCCTATTTAGTACGGCGGCG
AAGAATCAAATTATCACTATATTTATTCCTTTTTCTACTTCGTCTTCCAA
GTGCAGGATAACCCCAAGGGGTTGCGGGTCTTTTTCTACCAATCGGAGCC
CT
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