CV712781

Overview
NameCV712781
Unique NameCV712781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_MANES (30S ribosomal protein S19, chloroplastic OS=Manihot esculenta GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.457e-44
Identity = 83/92 (90.22%), Postives = 91/92 (98.91%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLL+KI+KLN KAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDN+SRR
Sbjct:    1 MTRSLKKNPFVANHLLKKINKLNNKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNKSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_PANGI (30S ribosomal protein S19, chloroplastic OS=Panax ginseng GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.903e-44
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVAN LLRKIDKLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNG+EHLPIYI DRMVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANRLLRKIDKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYINDRMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_MORIN (30S ribosomal protein S19, chloroplastic OS=Morus indica GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.903e-44
Identity = 83/92 (90.22%), Postives = 90/92 (97.83%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            + RSLKKNPFVANHLLRKI+ LNTKAEKEII+TWSRASTIIPTM+GHTIA+HNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDNRSRR
Sbjct:    1 MARSLKKNPFVANHLLRKINMLNTKAEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_DAUCA (30S ribosomal protein S19, chloroplastic OS=Daucus carota GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.903e-44
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVAN LLRKID LNTKAEKEIIITWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANRLLRKIDNLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_AETGR (30S ribosomal protein S19, chloroplastic OS=Aethionema grandiflora GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.903e-44
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLPIYI D MVGHKLGEFAPTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPIYIIDLMVGHKLGEFAPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_NICTO (30S ribosomal protein S19, chloroplastic OS=Nicotiana tomentosiformis GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.485e-44
Identity = 83/92 (90.22%), Postives = 91/92 (98.91%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLL+KI+KLNTKAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIEKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_AETCO (30S ribosomal protein S19, chloroplastic OS=Aethionema cordifolium GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.485e-44
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEFAPTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFAPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_OLIPU (30S ribosomal protein S19, chloroplastic OS=Olimarabidopsis pumila GN=rps19 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.537e-44
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_NASOF (30S ribosomal protein S19, chloroplastic OS=Nasturtium officinale GN=rps19 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.537e-44
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_LEPVR (30S ribosomal protein S19, chloroplastic OS=Lepidium virginicum GN=rps19 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.537e-44
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
The following BLAST results are available for this feature:
BLAST of CV712781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_MANES1.457e-4490.2230S ribosomal protein S19, chloroplastic OS=Maniho... [more]
RR19_PANGI1.903e-4492.3930S ribosomal protein S19, chloroplastic OS=Panax ... [more]
RR19_MORIN1.903e-4490.2230S ribosomal protein S19, chloroplastic OS=Morus ... [more]
RR19_DAUCA1.903e-4492.3930S ribosomal protein S19, chloroplastic OS=Daucus... [more]
RR19_AETGR1.903e-4493.4830S ribosomal protein S19, chloroplastic OS=Aethio... [more]
RR19_NICTO2.485e-4490.2230S ribosomal protein S19, chloroplastic OS=Nicoti... [more]
RR19_AETCO2.485e-4492.3930S ribosomal protein S19, chloroplastic OS=Aethio... [more]
RR19_OLIPU5.537e-4491.3030S ribosomal protein S19, chloroplastic OS=Olimar... [more]
RR19_NASOF5.537e-4491.3030S ribosomal protein S19, chloroplastic OS=Nastur... [more]
RR19_LEPVR5.537e-4491.3030S ribosomal protein S19, chloroplastic OS=Lepidi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712781 ID=CV712781; Name=CV712781; organism=Citrus sinensis; type=EST; length=802bp
CCCCTCGAGGTTTTAATCTTTTCGCAGTAGGACCCATAGCTATTCGGCTT
TAATAATGAATAAACTTCCTTCGTTGAAACCCAGATTGTGAATACCATTT
GCTGCTGCAGAATAAACCAATTTTAAAATGGGATAACATGCTCGATAAGG
CATGAGTTCGAGTATCATAAGGGTTTCCTCGTAAGAACGTCCACGAATCT
GATCAATTACCCTTCGGGCTTTGTGAGCAGACATACATATATGTTGACCT
AAAGCAGATACTTCTACCTTCTTCTTTATTATCCTTATCATAAGGTTCAC
CTCTCACCAATGAATCTATATTCACTTTATTAACGACGGGATCTATTATC
ATTTTTTGCATGTCCACGGAAATTGATAGTGGGCGCAAATTCTCCCAATT
TATGTCCTACCATACGATCTGTTATATAAATAGGCAAATGCTCCCTTCCA
TTATGGATAGCAATAGTATGGCCGACCATTGTGGGTATAATGGTAGATGC
CCGGGACCAAGTTATTATTATTTCTTTTTCCGCTTTTGTATTAAGCTTAT
CGATTTTTCTTAATAAATGATTCGCTACAAAAGGATTTTTTTTTAGTGAA
CGTGTCACAGTTAATTAACTCCTATTTTTTTCTTTTTTTTTTGTAAATTG
TAAAAACGAAGAAAAAAATTCGATTTTCTCTCCTATTTAGTACGGCGGCG
AAGAATCAAATTATCACTATATTTATTCCTTTTTCTACTTCGTCTTCCAA
GTGCAGGATAACCCCAAGGGGTTGCGGGTCTTTTTCTACCAATCGGAGCC
CT
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