CV712781

Overview
NameCV712781
Unique NameCV712781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_CRUWA (30S ribosomal protein S19, chloroplastic OS=Crucihimalaya wallichii GN=rps19 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.537e-44
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_CAPBU (30S ribosomal protein S19, chloroplastic OS=Capsella bursa-pastoris GN=rps19 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.537e-44
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_BARVE (30S ribosomal protein S19, chloroplastic OS=Barbarea verna GN=rps19 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.537e-44
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_ARATH (30S ribosomal protein S19, chloroplastic OS=Arabidopsis thaliana GN=rps19 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.537e-44
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_ARAHI (30S ribosomal protein S19, chloroplastic OS=Arabis hirsuta GN=rps19 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.537e-44
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_NICBI (30S ribosomal protein S19, chloroplastic OS=Nicotiana bigelovii GN=rps19 PE=3 SV=5)

HSP 1 Score: 177.563 bits (449), Expect = 7.231e-44
Identity = 82/92 (89.13%), Postives = 90/92 (97.83%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIPT +GHTIAIHNG+EHLPIYIT+ MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTXIGHTIAIHNGKEHLPIYITBSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_HELAN (30S ribosomal protein S19, chloroplastic OS=Helianthus annuus GN=rps19 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.231e-44
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLL+KI+KLNTK EKEIIITWSRASTIIP MVGHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKINKLNTKEEKEIIITWSRASTIIPIMVGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_LACSA (30S ribosomal protein S19, chloroplastic OS=Lactuca sativa GN=rps19 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.233e-43
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVAN+LL+KI+KLNTKAEKEIIITWSRASTIIP MVGHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANNLLKKINKLNTKAEKEIIITWSRASTIIPIMVGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_DRANE (30S ribosomal protein S19, chloroplastic OS=Draba nemorosa GN=rps19 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.748e-43
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKND RSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDTRSRR 92
[Close]
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_LOBMA (30S ribosomal protein S19, chloroplastic OS=Lobularia maritima GN=rps19 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.589e-43
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = -3 
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEII TWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIRTWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
The following BLAST results are available for this feature:
BLAST of CV712781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_CRUWA5.537e-4491.3030S ribosomal protein S19, chloroplastic OS=Crucih... [more]
RR19_CAPBU5.537e-4491.3030S ribosomal protein S19, chloroplastic OS=Capsel... [more]
RR19_BARVE5.537e-4491.3030S ribosomal protein S19, chloroplastic OS=Barbar... [more]
RR19_ARATH5.537e-4491.3030S ribosomal protein S19, chloroplastic OS=Arabid... [more]
RR19_ARAHI5.537e-4491.3030S ribosomal protein S19, chloroplastic OS=Arabis... [more]
RR19_NICBI7.231e-4489.1330S ribosomal protein S19, chloroplastic OS=Nicoti... [more]
RR19_HELAN7.231e-4491.3030S ribosomal protein S19, chloroplastic OS=Helian... [more]
RR19_LACSA1.233e-4391.3030S ribosomal protein S19, chloroplastic OS=Lactuc... [more]
RR19_DRANE2.748e-4390.2230S ribosomal protein S19, chloroplastic OS=Draba ... [more]
RR19_LOBMA3.589e-4390.2230S ribosomal protein S19, chloroplastic OS=Lobula... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712781 ID=CV712781; Name=CV712781; organism=Citrus sinensis; type=EST; length=802bp
CCCCTCGAGGTTTTAATCTTTTCGCAGTAGGACCCATAGCTATTCGGCTT
TAATAATGAATAAACTTCCTTCGTTGAAACCCAGATTGTGAATACCATTT
GCTGCTGCAGAATAAACCAATTTTAAAATGGGATAACATGCTCGATAAGG
CATGAGTTCGAGTATCATAAGGGTTTCCTCGTAAGAACGTCCACGAATCT
GATCAATTACCCTTCGGGCTTTGTGAGCAGACATACATATATGTTGACCT
AAAGCAGATACTTCTACCTTCTTCTTTATTATCCTTATCATAAGGTTCAC
CTCTCACCAATGAATCTATATTCACTTTATTAACGACGGGATCTATTATC
ATTTTTTGCATGTCCACGGAAATTGATAGTGGGCGCAAATTCTCCCAATT
TATGTCCTACCATACGATCTGTTATATAAATAGGCAAATGCTCCCTTCCA
TTATGGATAGCAATAGTATGGCCGACCATTGTGGGTATAATGGTAGATGC
CCGGGACCAAGTTATTATTATTTCTTTTTCCGCTTTTGTATTAAGCTTAT
CGATTTTTCTTAATAAATGATTCGCTACAAAAGGATTTTTTTTTAGTGAA
CGTGTCACAGTTAATTAACTCCTATTTTTTTCTTTTTTTTTTGTAAATTG
TAAAAACGAAGAAAAAAATTCGATTTTCTCTCCTATTTAGTACGGCGGCG
AAGAATCAAATTATCACTATATTTATTCCTTTTTCTACTTCGTCTTCCAA
GTGCAGGATAACCCCAAGGGGTTGCGGGTCTTTTTCTACCAATCGGAGCC
CT
back to top