CV712781

Overview
NameCV712781
Unique NameCV712781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_OENAR (30S ribosomal protein S19, chloroplastic OS=Oenothera argillicola GN=rps19 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.466e-36
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = -3
Query:  333 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 602
            RSLK NPFVAN LLRK++KLN + +K +I TWSRASTII TM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPTINF  HAKNDN+SRR
Sbjct:    3 RSLKNNPFVANPLLRKMEKLNRREDKILIRTWSRASTIILTMIGHTIAIHNGKEHLPIYITDYMVGHKLGEFAPTINFHEHAKNDNKSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_DIOEL (30S ribosomal protein S19, chloroplastic OS=Dioscorea elephantipes GN=rps19 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.466e-36
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFV +HL  KI+KLN + EKEII+TWSR STIIP M+GHTIAIHNG+EH PIYITD+MVGHKLGEF+PT+ F  H +NDN+SRR
Sbjct:    1 MTRSLKKNPFVVDHLSGKIEKLNMREEKEIIVTWSRGSTIIPAMMGHTIAIHNGKEHFPIYITDQMVGHKLGEFSPTLTFARHTRNDNKSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_ANGEV (30S ribosomal protein S19, chloroplastic OS=Angiopteris evecta GN=rps19 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.466e-36
Identity = 69/92 (75.00%), Postives = 83/92 (90.22%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKK PFVANHLLRKI+ LN + EK+II+T SRASTI+PTM+GHTIA++NG+EHLPIYITDRM+GHKLGEF PT  FRGHA++D +SRR
Sbjct:    1 MTRSLKKGPFVANHLLRKIENLNLRKEKKIIVTRSRASTIVPTMIGHTIAVYNGQEHLPIYITDRMIGHKLGEFVPTRIFRGHARSDKKSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_CHAGL (30S ribosomal protein S19, chloroplastic OS=Chaetosphaeridium globosum GN=rps19 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.754e-35
Identity = 64/92 (69.57%), Postives = 81/92 (88.04%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            + RS+KK PFVA+HL++KI+ LN K EK++IITWSRASTI+P M+GHTIA+HNGREHLP+++TDRMVG KLGEF+PT  FRGH K+D +SRR
Sbjct:    1 MARSIKKGPFVADHLIKKIENLNAKGEKKVIITWSRASTIVPMMIGHTIAVHNGREHLPVFVTDRMVGQKLGEFSPTRTFRGHVKSDKKSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_MESVI (30S ribosomal protein S19, chloroplastic OS=Mesostigma viride GN=rps19 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.014e-35
Identity = 66/92 (71.74%), Postives = 80/92 (86.96%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            + RSLKK PFVA+HLL+KI+ LN K EK++I TWSR STI+P M+GHTIA+HNGREHLPI+ITD+MVGHKLGEF+PT  FRGH K+D +SRR
Sbjct:    1 MARSLKKGPFVADHLLKKIEFLNVKKEKKVITTWSRGSTILPIMIGHTIAVHNGREHLPIFITDQMVGHKLGEFSPTRTFRGHTKSDKKSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_CHLVU (30S ribosomal protein S19, chloroplastic OS=Chlorella vulgaris GN=rps19 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.014e-35
Identity = 63/92 (68.48%), Postives = 81/92 (88.04%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            + RSLKK PFVANHLL K+++LNT+ +K++I TWSR+STI+P M+GHTIA+HNGREH+P++ITD+MVGHKLGEFAPT  FRGH K D +S+R
Sbjct:    1 MARSLKKAPFVANHLLEKVERLNTQGDKKVIKTWSRSSTIVPLMIGHTIAVHNGREHIPVFITDQMVGHKLGEFAPTRTFRGHVKKDKKSKR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_ANTFO (30S ribosomal protein S19, chloroplastic OS=Anthoceros formosae GN=rps19 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.014e-35
Identity = 69/92 (75.00%), Postives = 81/92 (88.04%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TR LKK PFVA HLL KI+ LN K EK+II+TWSRASTI+PTM+GHTIA++NG+EHLPIYITDRMVGHKLGEFA T  F+GHAK+D +SRR
Sbjct:    1 MTRLLKKGPFVAYHLLEKIEDLNIKREKKIIVTWSRASTIVPTMIGHTIAVYNGQEHLPIYITDRMVGHKLGEFALTRVFKGHAKSDKKSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RS19_CYAP7 (30S ribosomal protein S19 OS=Cyanothece sp. (strain PCC 7424) GN=rpsS PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.367e-34
Identity = 66/92 (71.74%), Postives = 82/92 (89.13%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            + RSLKK PFVA+HLL KI+KLN K EK++I TWSRASTIIP MVGHTIA+HNG++H+PI+I+++MVGHKLGEFAPT  FRGHAK+D ++RR
Sbjct:    1 MARSLKKGPFVADHLLSKIEKLNEKGEKQVIKTWSRASTIIPDMVGHTIAVHNGKQHVPIFISEQMVGHKLGEFAPTRTFRGHAKSDKKARR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_SPIMX (30S ribosomal protein S19, chloroplastic OS=Spirogyra maxima GN=rps19 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.332e-34
Identity = 64/92 (69.57%), Postives = 81/92 (88.04%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKK P VA+HLL+KI+ LN++ EK +I+TWSR STI+P M+GHTIA++NGREHLPI++TD MVGHKLGEF+PT  FRGHAK+D +SRR
Sbjct:    1 MTRSLKKGPNVADHLLKKIENLNSQGEKRVIVTWSRGSTIVPAMIGHTIAVYNGREHLPIFVTDLMVGHKLGEFSPTRTFRGHAKSDKKSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_PSINU (30S ribosomal protein S19, chloroplastic OS=Psilotum nudum GN=rps19 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.332e-34
Identity = 67/92 (72.83%), Postives = 79/92 (85.87%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKK PFVA+HL +KI+ LN K EK +IITWSRASTI+P M+GHTIA++NGREHLPIY+TDRMVGHKLGEF  T  FRGHA+ D +SRR
Sbjct:    1 MTRSLKKVPFVAHHLWKKIESLNIKKEKRVIITWSRASTIVPGMIGHTIAVYNGREHLPIYVTDRMVGHKLGEFVLTRTFRGHARKDKKSRR 92          
The following BLAST results are available for this feature:
BLAST of CV712781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_OENAR9.466e-3680.0030S ribosomal protein S19, chloroplastic OS=Oenoth... [more]
RR19_DIOEL9.466e-3673.9130S ribosomal protein S19, chloroplastic OS=Diosco... [more]
RR19_ANGEV9.466e-3675.0030S ribosomal protein S19, chloroplastic OS=Angiop... [more]
RR19_CHAGL2.754e-3569.5730S ribosomal protein S19, chloroplastic OS=Chaeto... [more]
RR19_MESVI8.014e-3571.7430S ribosomal protein S19, chloroplastic OS=Mesost... [more]
RR19_CHLVU8.014e-3568.4830S ribosomal protein S19, chloroplastic OS=Chlore... [more]
RR19_ANTFO8.014e-3575.0030S ribosomal protein S19, chloroplastic OS=Anthoc... [more]
RS19_CYAP71.367e-3471.7430S ribosomal protein S19 OS=Cyanothece sp. (strai... [more]
RR19_SPIMX2.332e-3469.5730S ribosomal protein S19, chloroplastic OS=Spirog... [more]
RR19_PSINU2.332e-3472.8330S ribosomal protein S19, chloroplastic OS=Psilot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712781 ID=CV712781; Name=CV712781; organism=Citrus sinensis; type=EST; length=802bp
CCCCTCGAGGTTTTAATCTTTTCGCAGTAGGACCCATAGCTATTCGGCTT
TAATAATGAATAAACTTCCTTCGTTGAAACCCAGATTGTGAATACCATTT
GCTGCTGCAGAATAAACCAATTTTAAAATGGGATAACATGCTCGATAAGG
CATGAGTTCGAGTATCATAAGGGTTTCCTCGTAAGAACGTCCACGAATCT
GATCAATTACCCTTCGGGCTTTGTGAGCAGACATACATATATGTTGACCT
AAAGCAGATACTTCTACCTTCTTCTTTATTATCCTTATCATAAGGTTCAC
CTCTCACCAATGAATCTATATTCACTTTATTAACGACGGGATCTATTATC
ATTTTTTGCATGTCCACGGAAATTGATAGTGGGCGCAAATTCTCCCAATT
TATGTCCTACCATACGATCTGTTATATAAATAGGCAAATGCTCCCTTCCA
TTATGGATAGCAATAGTATGGCCGACCATTGTGGGTATAATGGTAGATGC
CCGGGACCAAGTTATTATTATTTCTTTTTCCGCTTTTGTATTAAGCTTAT
CGATTTTTCTTAATAAATGATTCGCTACAAAAGGATTTTTTTTTAGTGAA
CGTGTCACAGTTAATTAACTCCTATTTTTTTCTTTTTTTTTTGTAAATTG
TAAAAACGAAGAAAAAAATTCGATTTTCTCTCCTATTTAGTACGGCGGCG
AAGAATCAAATTATCACTATATTTATTCCTTTTTCTACTTCGTCTTCCAA
GTGCAGGATAACCCCAAGGGGTTGCGGGTCTTTTTCTACCAATCGGAGCC
CT
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