CV712781

Overview
NameCV712781
Unique NameCV712781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_NEPOL (30S ribosomal protein S19, chloroplastic OS=Nephroselmis olivacea GN=rps19 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.332e-34
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = -3
Query:  333 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 602
            RSLKK PFVANHLLRKI+K+N K EK +I TWSRASTIIP M+GHTIAIHNG+ HLPI+I DRM+GHKLGEF  T N+RGH K D ++RR
Sbjct:    3 RSLKKGPFVANHLLRKIEKMNGKGEKHVITTWSRASTIIPIMIGHTIAIHNGKSHLPIFINDRMIGHKLGEFVLTRNYRGHGKTDKKARR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_OLTVI (30S ribosomal protein S19, chloroplastic OS=Oltmannsiellopsis viridis GN=rps19 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.194e-34
Identity = 60/92 (65.22%), Postives = 82/92 (89.13%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            ++RSLKK PFVA+HLL+K++KLN + +K++I TWSRASTI+P M+GHTIA+HNGREH+P+++TD+MVGHKLGEFAPT  FRGH  +D +++R
Sbjct:    1 MSRSLKKGPFVADHLLKKVEKLNAQNDKKVITTWSRASTIVPVMIGHTIAVHNGREHIPVFVTDQMVGHKLGEFAPTRTFRGHKNSDKKAKR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_CHLAT (30S ribosomal protein S19, chloroplastic OS=Chlorokybus atmophyticus GN=rps19 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.194e-34
Identity = 63/92 (68.48%), Postives = 80/92 (86.96%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            + RSLKK PFVA+HLL+KI+ LN + EK++I TWSR STI+P M+GHTIA++NGREHLPI++TD+MVGHKLGEF+PT  FRGH K+D +SRR
Sbjct:    1 MARSLKKGPFVADHLLKKIEYLNARREKQVITTWSRGSTIVPIMIGHTIAVYNGREHLPIFVTDQMVGHKLGEFSPTRTFRGHVKSDKKSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_ADICA (30S ribosomal protein S19, chloroplastic OS=Adiantum capillus-veneris GN=rps19 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 8.860e-34
Identity = 64/92 (69.57%), Postives = 78/92 (84.78%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            + RS K+ PFVANHL+R+I  LN + ++++I TWSRAS I+P M+GHTIA+HNGREHLPIY+TDRMVGHKLGEF PT NFRGHAK+D  SRR
Sbjct:    1 MARSSKRGPFVANHLIREIRNLNIQKKRKLITTWSRASAIVPIMIGHTIAVHNGREHLPIYVTDRMVGHKLGEFVPTRNFRGHAKSDKGSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_CYAPA (Cyanelle 30S ribosomal protein S19 OS=Cyanophora paradoxa GN=rps19 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.157e-33
Identity = 62/92 (67.39%), Postives = 80/92 (86.96%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            + RSLKK PF+A+HLL+K++ LNT  + E+I TWSRASTI+P MVGHTIA+HNGR+HLP++ITD+MVGHKLGEFAPT  F+GH K+D ++RR
Sbjct:    1 MARSLKKGPFIAHHLLKKVELLNTSGKTEVIKTWSRASTILPMMVGHTIAVHNGRQHLPVFITDQMVGHKLGEFAPTRTFKGHTKSDKKARR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RS19_SYNP6 (30S ribosomal protein S19 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsS PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.578e-33
Identity = 61/91 (67.03%), Postives = 78/91 (85.71%), Query Frame = -3
Query:  336 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSR 608
            + RSLKK PFVA+HLLRK++KLN K +K++I TWSRASTI+P M+GHTIA+HNGR+H+P+Y+T++MVGHKLGEFAPT  FRGH K+    R
Sbjct:    1 MARSLKKGPFVADHLLRKVEKLNAKGDKQVIKTWSRASTILPQMIGHTIAVHNGRQHVPVYVTEQMVGHKLGEFAPTRTFRGHTKDKKAGR 91          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RS19_SYNE7 (30S ribosomal protein S19 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsS PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.578e-33
Identity = 61/91 (67.03%), Postives = 78/91 (85.71%), Query Frame = -3
Query:  336 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSR 608
            + RSLKK PFVA+HLLRK++KLN K +K++I TWSRASTI+P M+GHTIA+HNGR+H+P+Y+T++MVGHKLGEFAPT  FRGH K+    R
Sbjct:    1 MARSLKKGPFVADHLLRKVEKLNAKGDKQVIKTWSRASTILPQMIGHTIAVHNGRQHVPVYVTEQMVGHKLGEFAPTRTFRGHTKDKKAGR 91          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_OEDCA (30S ribosomal protein S19, chloroplastic OS=Oedogonium cardiacum GN=rps19 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.578e-33
Identity = 60/92 (65.22%), Postives = 80/92 (86.96%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            + RSLKK PFVAN L +KI+KLN K +K++++TWSR+STI+P M+GHTIA+HNGREH+P++ITD+MVGHKLGEF+ T  +RGHAK D +S+R
Sbjct:    1 MVRSLKKGPFVANDLFKKIEKLNNKGKKKVLVTWSRSSTIVPVMIGHTIAVHNGREHIPVFITDKMVGHKLGEFSLTRTYRGHAKTDKKSKR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_JASNU (30S ribosomal protein S19, chloroplastic OS=Jasminum nudiflorum GN=rps19 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.578e-33
Identity = 71/98 (72.45%), Postives = 81/98 (82.65%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINF-RGH-----AKNDNRSRR 608
            + RSLKKNPFV +HL+RKIDKLN K +K II TWSRASTIIPTM+GHTIA++ G+EHLPIYITD M GHKLGEFAPT+ F RGH      KNDNRS+R
Sbjct:    1 MARSLKKNPFVVHHLVRKIDKLNKKKKKGIIKTWSRASTIIPTMIGHTIAVYKGKEHLPIYITDYMTGHKLGEFAPTLYFLRGHPTERPTKNDNRSQR 98          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_PSEAK (30S ribosomal protein S19, chloroplastic OS=Pseudendoclonium akinetum GN=rps19 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.367e-33
Identity = 63/92 (68.48%), Postives = 78/92 (84.78%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            ++RSLKK PFVANHLL+K+ KLN   EK++I TWSR+S IIP M+GHTI+IHNG+EH+P+YITD MVGHKLGEFAPT  F+GH K D +S+R
Sbjct:    1 MSRSLKKGPFVANHLLKKVQKLNDLDEKQVIKTWSRSSVIIPIMIGHTISIHNGKEHIPLYITDLMVGHKLGEFAPTRTFKGHIKKDKKSKR 92          
The following BLAST results are available for this feature:
BLAST of CV712781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_NEPOL2.332e-3473.3330S ribosomal protein S19, chloroplastic OS=Nephro... [more]
RR19_OLTVI5.194e-3465.2230S ribosomal protein S19, chloroplastic OS=Oltman... [more]
RR19_CHLAT5.194e-3468.4830S ribosomal protein S19, chloroplastic OS=Chloro... [more]
RR19_ADICA8.860e-3469.5730S ribosomal protein S19, chloroplastic OS=Adiant... [more]
RR19_CYAPA1.157e-3367.39Cyanelle 30S ribosomal protein S19 OS=Cyanophora p... [more]
RS19_SYNP62.578e-3367.0330S ribosomal protein S19 OS=Synechococcus sp. (st... [more]
RS19_SYNE72.578e-3367.0330S ribosomal protein S19 OS=Synechococcus elongat... [more]
RR19_OEDCA2.578e-3365.2230S ribosomal protein S19, chloroplastic OS=Oedogo... [more]
RR19_JASNU2.578e-3372.4530S ribosomal protein S19, chloroplastic OS=Jasmin... [more]
RR19_PSEAK3.367e-3368.4830S ribosomal protein S19, chloroplastic OS=Pseude... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712781 ID=CV712781; Name=CV712781; organism=Citrus sinensis; type=EST; length=802bp
CCCCTCGAGGTTTTAATCTTTTCGCAGTAGGACCCATAGCTATTCGGCTT
TAATAATGAATAAACTTCCTTCGTTGAAACCCAGATTGTGAATACCATTT
GCTGCTGCAGAATAAACCAATTTTAAAATGGGATAACATGCTCGATAAGG
CATGAGTTCGAGTATCATAAGGGTTTCCTCGTAAGAACGTCCACGAATCT
GATCAATTACCCTTCGGGCTTTGTGAGCAGACATACATATATGTTGACCT
AAAGCAGATACTTCTACCTTCTTCTTTATTATCCTTATCATAAGGTTCAC
CTCTCACCAATGAATCTATATTCACTTTATTAACGACGGGATCTATTATC
ATTTTTTGCATGTCCACGGAAATTGATAGTGGGCGCAAATTCTCCCAATT
TATGTCCTACCATACGATCTGTTATATAAATAGGCAAATGCTCCCTTCCA
TTATGGATAGCAATAGTATGGCCGACCATTGTGGGTATAATGGTAGATGC
CCGGGACCAAGTTATTATTATTTCTTTTTCCGCTTTTGTATTAAGCTTAT
CGATTTTTCTTAATAAATGATTCGCTACAAAAGGATTTTTTTTTAGTGAA
CGTGTCACAGTTAATTAACTCCTATTTTTTTCTTTTTTTTTTGTAAATTG
TAAAAACGAAGAAAAAAATTCGATTTTCTCTCCTATTTAGTACGGCGGCG
AAGAATCAAATTATCACTATATTTATTCCTTTTTCTACTTCGTCTTCCAA
GTGCAGGATAACCCCAAGGGGTTGCGGGTCTTTTTCTACCAATCGGAGCC
CT
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