EY692109

Overview
NameEY692109
Unique NameEY692109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_METS3 (30S ribosomal protein S3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.551e-13
Identity = 43/106 (40.57%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   67 GLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 384
            G+  RR  Y  +R IM +GA+G EV +SGK+R  R+   KF +GY+   G+P    ++     V L+ GVLGI V+IM          P T LPD V I P K E+
Sbjct:  105 GMHFRRVAYSTIRRIMGAGAQGVEVTISGKIRGSRSAVAKFVEGYIKKCGEPSIRLVEEGFATVQLKPGVLGIYVRIM---------PPETVLPDSVEILPPKMEI 201          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_METM5 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.551e-13
Identity = 43/121 (35.54%), Postives = 63/121 (52.07%), Query Frame = 1
Query:    1 KVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 363
            +V N  L        +   L  G+  RR  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ GV+G+ VKIM          P   LPD +TI
Sbjct:   83 QVENPDLDPAIVGHKIASSLERGMHFRRTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTVKIM---------KPDVTLPDEITI 194          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_METB6 (30S ribosomal protein S3P OS=Methanoregula boonei (strain 6A8) GN=rps3p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.468e-13
Identity = 37/100 (37.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    1 KVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 300
            +V N    A   AE L   L  G   R+A   ++R +M+SGA GCEV+++GKL   RA++ KF +GY+   G+P N  ++      + + GV+G++VKI+
Sbjct:   84 QVQNPSFNAQIMAERLANALERGWYFRKAGSSIMRRVMDSGALGCEVVIAGKLTGARARTQKFTEGYIKHCGEPSNTIVEKGYAIAIKKLGVIGVQVKIV 183          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_METST (30S ribosomal protein S3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps3p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 1
Query:   67 GLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 363
            G+  RR  Y ++R IM +GA+G EV +SGK+R  R+   KF +GY+   G+P  +Y+      V L+ GVLGI V+IM          P   LPD + I
Sbjct:  105 GMQFRRVAYSIIRRIMSAGAQGVEVTISGKIRGSRSACAKFNEGYIKKCGEPSIKYVKEGFATVQLKPGVLGIYVRIM---------PPEVTLPDNIEI 194          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_META3 (30S ribosomal protein S3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps3p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 43/130 (33.08%), Postives = 67/130 (51.54%), Query Frame = 1
Query:    1 KVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV 390
            ++ +  L A   A+ +   L  G+  RR  +  +R +M  GAKG  VIVSGKL  +R+++ K+ +GYM   G+P  E +D   +   L+ GV+G+ VKIM          P   LPD + I  +  +  V
Sbjct:   83 QIESPDLDAGVVAQKIASSLERGMHFRRVAHSAIRRVMAQGAKGVVVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVDQCHKIAKLKLGVVGVTVKIM---------PPEITLPDEIVIKDVPSKTTV 203          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_METM7 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   67 GLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 363
            G+  R+  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ GV+G+ VKIM          P   LPD +TI
Sbjct:  105 GMHFRKTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTVKIM---------KPDVSLPDEITI 194          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_METBF (30S ribosomal protein S3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 46/128 (35.94%), Postives = 63/128 (49.22%), Query Frame = 1
Query:    1 KVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 384
            +V    L A   A  L   +  G   R+A +  LR +M +GA GCEV++SGKL   R++  KF DGY+  SG PV+E +D      + + G LG KV+I+          P   LPD  T     E V
Sbjct:   84 EVKKPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVDEVVDEGFAVAIKKLGTLGCKVRII---------QPGVVLPDSYTTTEPSEPV 202          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_METM6 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.755e-12
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   67 GLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 363
            G+  R+  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ GV+G+ VKIM          P   LPD +TI
Sbjct:  105 GMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTVKIM---------KPDVSLPDEITI 194          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_METKA (30S ribosomal protein S3P OS=Methanopyrus kandleri GN=rps3p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.755e-12
Identity = 43/114 (37.72%), Postives = 61/114 (53.51%), Query Frame = 1
Query:   37 AESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 378
            A  L   L  G+  RRA YG LR IM +GAKG  +I+SGKL   RA++ KF +G +   G+P +EY+       + + G +G+ V+IM          P   LPD + I P +E
Sbjct:  104 ARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTKPGAIGVTVRIM---------PPDVELPDELEIRPPEE 208          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_HALMA (30S ribosomal protein S3P OS=Haloarcula marismortui GN=rps3p PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.755e-12
Identity = 49/148 (33.11%), Postives = 76/148 (51.35%), Query Frame = 1
Query:    1 KVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATATSIELPVAINPE 441
            +V+   L A   A+ L   L  G   R+A +  +  IMESGA G E+++SGK+   R++  KF  GY+  +G+P  E +DS V   +++ G +G++VKI+          P   LPD   I+  +  E YVA     S+E  +   PE
Sbjct:   84 EVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGVRVKII---------PPNAELPDDFEIYEDVDVEDYVADTDGESVEELLEGEPE 222          
The following BLAST results are available for this feature:
BLAST of EY692109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
RS3_METS35.551e-1340.5730S ribosomal protein S3P OS=Methanobrevibacter sm... [more]
RS3_METM55.551e-1335.5430S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_METB69.468e-1337.0030S ribosomal protein S3P OS=Methanoregula boonei ... [more]
RS3_METST1.237e-1239.3930S ribosomal protein S3P OS=Methanosphaera stadtm... [more]
RS3_META31.615e-1233.0830S ribosomal protein S3P OS=Methanococcus aeolicu... [more]
RS3_METM72.109e-1238.3830S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_METBF2.109e-1235.9430S ribosomal protein S3P OS=Methanosarcina barker... [more]
RS3_METM62.755e-1238.3830S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_METKA2.755e-1237.7230S ribosomal protein S3P OS=Methanopyrus kandleri... [more]
RS3_HALMA2.755e-1233.1130S ribosomal protein S3P OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-106-H04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692109 ID=EY692109; Name=EY692109; organism=Citrus sinensis; type=EST; length=625bp
AAAGTTAACAATAGGGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTGCG
TTACAAGCTTCTTGGAGGTCTCGCTGTTCGAAGGGCATGCTATGGTGTGC
TGAGATTTATCATGGAGAGTGGTGCCAAGGGATGTGAGGTTATTGTGAGT
GGAAAGCTCCGGGCTCAACGTGCAAAGTCCATGAAATTTAAAGATGGGTA
CATGATATCCTCAGGTCAACCTGTGAATGAATACATCGACTCAGCTGTAA
GACATGTTCTTCTTAGACAGGGTGTGCTTGGTATCAAGGTGAAGATCATG
CTTGAATGGGATCAAAAGGGCAAGCAAGGGCCAACAACACCTTTGCCTGA
TCTGGTTACCATCCACCCTCTGAAGGAAGAAGTGTATGTTGCACCAGCGA
CGGCAACCAGTATTGAGCTTCCAGTAGCTATAAACCCTGAGTTGAGTTGT
GTCCAATGTCTGATGTAATGATTTAGTAATAGCTTTTATGTTTTCTTTTA
TCCTTTTTTAATTATCTATGGAGGAGCAAGAAAATACTACTGGGTAATGG
GCATGATGTTGTCTTGTCTACAATTTTTGGGTTATTAAAAAATTTTGGGT
TCAGTTTTTAAAAAAAAAAAAAAAA
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