EY692109

Overview
NameEY692109
Unique NameEY692109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_UNCMA (30S ribosomal protein S3P OS=Uncultured methanogenic archaeon RC-I GN=rps3p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 49/135 (36.30%), Postives = 66/135 (48.89%), Query Frame = 1
Query:    1 KVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATA 405
            +V    L A   A  L   L  G   R+A    L+ IM+SGA GCEVI++GKL   R +  KF  GY+   G+PV E +D        + G++G+KV+IM          P   LPD +TI   +     APA A
Sbjct:   84 EVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIMDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVDVGYARAKKKLGIIGVKVRIM---------PPEAVLPDQITIEAAQA---AAPAPA 206          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_METMJ (30S ribosomal protein S3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 1
Query:    1 KVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 399
            +V N    A   AE L   L  G   R+A    +R IMESGA GCEVIV+GKL   R+++ KF +GY+   G+P    ++      + + G +G++VKI+          P   LPD   +  L+ E   APA
Sbjct:   84 QVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIMESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQVKIV---------PPDARLPDAFDV--LEPEPKKAPA 205          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_METJA (30S ribosomal protein S3P OS=Methanocaldococcus jannaschii GN=rps3p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 45/120 (37.50%), Postives = 61/120 (50.83%), Query Frame = 1
Query:    4 VNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 363
            V N  L A   A+ +   L  GL  RR  +  +R +M +GAKG  VI+SGKL  +RA++ KF  GYM   G+P  E +D        + GV+G+ VKIM          P   LPD + I
Sbjct:   84 VENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVMNAGAKGVIVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKPGVIGVTVKIM---------RPDVLLPDEIII 194          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_METAC (30S ribosomal protein S3P OS=Methanosarcina acetivorans GN=rps3p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:    1 KVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 300
            +V    L A   A  L   +  G   R+A +  LR +M +GA GCEV++SGKL   R++  KF DGY+  SG PV E +D      + + G LG KV+I+
Sbjct:   84 EVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVRII 183          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_SULAC (30S ribosomal protein S3P OS=Sulfolobus acidocaldarius GN=rps3p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 1
Query:   10 NRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 297
            N  L A   A  L   L  G   RRA +  +R IM SGA G EVIVSGKL ++RAK  K K+G +  SGQ + + ID A+   +L+ GV G++V I
Sbjct:   88 NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGVYGVEVVI 183          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_METMP (30S ribosomal protein S3P OS=Methanococcus maripaludis GN=rps3p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 40/121 (33.06%), Postives = 62/121 (51.24%), Query Frame = 1
Query:    1 KVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 363
            +V N  L        +   L  G+  R+  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ G++G+ VKIM          P   LPD + I
Sbjct:   83 QVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGVTVKIM---------RPDVSLPDEIVI 194          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_METMA (30S ribosomal protein S3P OS=Methanosarcina mazei GN=rps3p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 38/100 (38.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:    1 KVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 300
            +V    L A   A  L   +  G   R+A +  +R +M +GA GCEV++SGKL   R++  KF DGY+  SG PV E +D      + + G LG KV+I+
Sbjct:   84 EVKKPELNAQMMASRLAASIERGWYFRKAGHNTIRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGHPVEEVVDEGFAVAIKKLGTLGCKVRII 183          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_METTH (30S ribosomal protein S3P OS=Methanobacterium thermoautotrophicum GN=rps3p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 1
Query:   37 AESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 363
            A  +   L  G+  RR  Y  +R IM +GA+G EV +SGK+R  R+ + KF DGY+   G+P  +++      V L+ GVLG+ V+IM          P   LPD V I
Sbjct:   95 AHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVRIM---------PPDVVLPDKVEI 194          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_SULSO (30S ribosomal protein S3P OS=Sulfolobus solfataricus GN=rps3p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.367e-11
Identity = 45/123 (36.59%), Postives = 65/123 (52.85%), Query Frame = 1
Query:    4 VNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI----MLEWDQKGKQGPTTPLPDLVT 360
            V N  L A   A  L   L  G   RRA +  +R IM +GA G E+I+SGKL  +RA+  K K+G +  SGQ + + ID A+   +L+ G+ G++V I     +E     K+ P+ P    VT
Sbjct:   86 VENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVEVVITKPLKIEDKINLKESPSVPQEVSVT 208          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_STAMF (30S ribosomal protein S3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 43/121 (35.54%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   79 RRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIELPVAINPE 441
            RR    +LR +ME+GA G E+I+SGKLR++RA+  K K G +  +G  V+  +D AV   LL++GV G++V I+          P    PD V I  +K E           E   +I+P+
Sbjct:  113 RRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVVIV---------RPHLKPPDYVEIKSVKPEELADLIPVEKEETNESISPQ 224          
The following BLAST results are available for this feature:
BLAST of EY692109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
RS3_UNCMA3.598e-1236.3030S ribosomal protein S3P OS=Uncultured methanogen... [more]
RS3_METMJ3.598e-1235.3430S ribosomal protein S3P OS=Methanoculleus marisn... [more]
RS3_METJA3.598e-1237.5030S ribosomal protein S3P OS=Methanocaldococcus ja... [more]
RS3_METAC4.699e-1239.0030S ribosomal protein S3P OS=Methanosarcina acetiv... [more]
RS3_SULAC6.137e-1244.7930S ribosomal protein S3P OS=Sulfolobus acidocalda... [more]
RS3_METMP6.137e-1233.0630S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_METMA6.137e-1238.0030S ribosomal protein S3P OS=Methanosarcina mazei ... [more]
RS3_METTH8.015e-1237.6130S ribosomal protein S3P OS=Methanobacterium ther... [more]
RS3_SULSO1.367e-1136.5930S ribosomal protein S3P OS=Sulfolobus solfataric... [more]
RS3_STAMF1.786e-1135.5430S ribosomal protein S3P OS=Staphylothermus marin... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-106-H04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692109 ID=EY692109; Name=EY692109; organism=Citrus sinensis; type=EST; length=625bp
AAAGTTAACAATAGGGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTGCG
TTACAAGCTTCTTGGAGGTCTCGCTGTTCGAAGGGCATGCTATGGTGTGC
TGAGATTTATCATGGAGAGTGGTGCCAAGGGATGTGAGGTTATTGTGAGT
GGAAAGCTCCGGGCTCAACGTGCAAAGTCCATGAAATTTAAAGATGGGTA
CATGATATCCTCAGGTCAACCTGTGAATGAATACATCGACTCAGCTGTAA
GACATGTTCTTCTTAGACAGGGTGTGCTTGGTATCAAGGTGAAGATCATG
CTTGAATGGGATCAAAAGGGCAAGCAAGGGCCAACAACACCTTTGCCTGA
TCTGGTTACCATCCACCCTCTGAAGGAAGAAGTGTATGTTGCACCAGCGA
CGGCAACCAGTATTGAGCTTCCAGTAGCTATAAACCCTGAGTTGAGTTGT
GTCCAATGTCTGATGTAATGATTTAGTAATAGCTTTTATGTTTTCTTTTA
TCCTTTTTTAATTATCTATGGAGGAGCAAGAAAATACTACTGGGTAATGG
GCATGATGTTGTCTTGTCTACAATTTTTGGGTTATTAAAAAATTTTGGGT
TCAGTTTTTAAAAAAAAAAAAAAAA
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