EY692109

Overview
NameEY692109
Unique NameEY692109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_SULTO (30S ribosomal protein S3P OS=Sulfolobus tokodaii GN=rps3p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 45/124 (36.29%), Postives = 66/124 (53.23%), Query Frame = 1
Query:    4 VNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGK----QGPTTPLPDLVTI 363
            V N  L A   A  L   L  G   RRA +  +R IM +GA G EVI+SGKL ++RAK  K K+G +  SG  +++ +D AV   +L+ GV G+++ I        K    + P  P  ++VT+
Sbjct:   86 VENPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMNAGALGAEVIISGKLTSERAKYEKLKEGVVYKSGAFLDKIVDRAVAIAMLKPGVYGVEILITKPMKSVDKIELREQPKGPGENMVTV 209          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_METVS (30S ribosomal protein S3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.046e-11
Identity = 35/99 (35.35%), Postives = 56/99 (56.57%), Query Frame = 1
Query:   67 GLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 363
            G+  R+  +  +R +M +GAKG  +I+SGKL  +R+++ KF DGYM   G+P  E +  + +   L+ G++G+ VKIM          P   LPD + I
Sbjct:  105 GMHFRKTAHSAVRRVMAAGAKGVAIIISGKLSGERSRTEKFMDGYMKHCGEPAEELVIKSHQLAKLKLGIVGVTVKIM---------RPDVSLPDEIII 194          
BLAST of EY692109 vs. ExPASy Swiss-Prot
Match: RS3_IGNH4 (30S ribosomal protein S3P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps3p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.195e-11
Identity = 44/99 (44.44%), Postives = 54/99 (54.55%), Query Frame = 1
Query:    1 KVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 297
            KV    L A   A  L   L  G   RRA Y  LR IM +GA G +V VSGKLR +RA+  K+  G +  SG  V    D A+ HVLL+ GV G++V I
Sbjct:   89 KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKVGVEGVEVII 187          
The following BLAST results are available for this feature:
BLAST of EY692109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
RS3_SULTO2.332e-1136.2930S ribosomal protein S3P OS=Sulfolobus tokodaii G... [more]
RS3_METVS3.046e-1135.3530S ribosomal protein S3P OS=Methanococcus vanniel... [more]
RS3_IGNH45.195e-1144.4430S ribosomal protein S3P OS=Ignicoccus hospitalis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-106-H04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692109 ID=EY692109; Name=EY692109; organism=Citrus sinensis; type=EST; length=625bp
AAAGTTAACAATAGGGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTGCG
TTACAAGCTTCTTGGAGGTCTCGCTGTTCGAAGGGCATGCTATGGTGTGC
TGAGATTTATCATGGAGAGTGGTGCCAAGGGATGTGAGGTTATTGTGAGT
GGAAAGCTCCGGGCTCAACGTGCAAAGTCCATGAAATTTAAAGATGGGTA
CATGATATCCTCAGGTCAACCTGTGAATGAATACATCGACTCAGCTGTAA
GACATGTTCTTCTTAGACAGGGTGTGCTTGGTATCAAGGTGAAGATCATG
CTTGAATGGGATCAAAAGGGCAAGCAAGGGCCAACAACACCTTTGCCTGA
TCTGGTTACCATCCACCCTCTGAAGGAAGAAGTGTATGTTGCACCAGCGA
CGGCAACCAGTATTGAGCTTCCAGTAGCTATAAACCCTGAGTTGAGTTGT
GTCCAATGTCTGATGTAATGATTTAGTAATAGCTTTTATGTTTTCTTTTA
TCCTTTTTTAATTATCTATGGAGGAGCAAGAAAATACTACTGGGTAATGG
GCATGATGTTGTCTTGTCTACAATTTTTGGGTTATTAAAAAATTTTGGGT
TCAGTTTTTAAAAAAAAAAAAAAAA
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