CV712693

Overview
NameCV712693
Unique NameCV712693
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_PYRAR (30S ribosomal protein S12P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.544e-34
Identity = 74/130 (56.92%), Postives = 98/130 (75.38%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALF 471
            G+ AG KLK  R+  +W D +YK+  LG   K  P  G+  A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK + AFVP DG LNYI E+DEV+I    G +G ++GDIPGVRFKV+KV+GVSL A++
Sbjct:    9 GLFAGGKLKRKRKRFKWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIW 138          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.046e-34
Identity = 74/129 (57.36%), Postives = 93/129 (72.09%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            G  A RKLK  R+ +RW+D  Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +KV KV+GVSL+ L
Sbjct:    4 GKYAARKLKQDRQQRRWSDSEYARRERGLGAKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIEL 132          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_STAMF (30S ribosomal protein S12P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.896e-34
Identity = 73/130 (56.15%), Postives = 97/130 (74.62%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALF 471
            G+ A RKL+  R   RW+ + +K   LG + K  P  G+  A+GIVLEK+G+EA+QPNSA+RKC RVQL KNGK + AFVP DG +NYI+E+DEV+I G  G +G ++GDIPGVR+KV+ V+GVSL AL+
Sbjct:    9 GLFAARKLRRKRLKFRWSQREFKIKMLGLKKKHDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLAKNGKVVTAFVPFDGGINYIDEHDEVIIEGIGGPRGRSMGDIPGVRYKVIMVNGVSLKALY 138          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_HALMA (30S ribosomal protein S12P OS=Haloarcula marismortui GN=rps12p PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.031e-33
Identity = 74/129 (57.36%), Postives = 92/129 (71.32%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            G  A RKLK  R+  RW+D  Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +KV KV+GVSL+ L
Sbjct:    4 GKYAARKLKKDRQKHRWSDTDYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIEL 132          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_NATPD (30S ribosomal protein S12P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps12p PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.347e-33
Identity = 74/129 (57.36%), Postives = 92/129 (71.32%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            G  A RKLK  R+  RW+D  Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +KV KV+GVSL+ L
Sbjct:    4 GKYAARKLKQDRQKHRWSDSDYARRARGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIEL 132          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_THECE (30S ribosomal protein S12P OS=Thermococcus celer GN=rps12p PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.000e-33
Identity = 76/129 (58.91%), Postives = 93/129 (72.09%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            G  AGRKLK  R+  RW+D  YK+  L   E   P  G+  AKGIVLEKI +EAKQPNSA+RK  RVQLIKNGK + AF P DG +N+I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQAKGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKEL 137          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_THEPD (30S ribosomal protein S12P OS=Thermofilum pendens (strain Hrk 5) GN=rps12p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.118e-33
Identity = 71/127 (55.91%), Postives = 95/127 (74.80%), Query Frame = 1
Query:   85 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSL 459
            RGM A RKL+  R+  RW+D  YK+  L  + K  P  G+  A+GIV+EK+GIE++QPNSA+RKC RVQL+KNGK + AF+P DG L ++ E+DEV+I G  G +G A GD+PGVR+KV+KV+GVSL
Sbjct:    8 RGMFAARKLELKRKKFRWSDLEYKRRILQLKKKVDPLEGAPQARGIVVEKVGIESRQPNSAVRKCVRVQLLKNGKVVTAFLPGDGALLFVNEHDEVVIEGIGGPEGRAYGDLPGVRWKVIKVNGVSL 134          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_PYRKO (30S ribosomal protein S12P OS=Pyrococcus kodakaraensis GN=rps12p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.684e-33
Identity = 75/129 (58.14%), Postives = 93/129 (72.09%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            G  AGRKLK  R+  RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNSA+RK  RVQLIKNGK + AF P DG +N+I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKEL 137          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_METTH (30S ribosomal protein S12P OS=Methanobacterium thermoautotrophicum GN=rps12p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.684e-33
Identity = 71/126 (56.35%), Postives = 93/126 (73.81%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSL 459
            G+ A +KLK+ R+  +W D  YK+  L  + K  P  G+  A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK+I AF P DG + +I+E+DEV++ G  G  G ++GDIPGVR+KV KV+ VSL
Sbjct:    3 GLFAAKKLKSKRQKFKWKDTHYKRRSLRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVVVEGIGGPSGRSMGDIPGVRWKVTKVNNVSL 128          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_UNCMA (30S ribosomal protein S12P OS=Uncultured methanogenic archaeon RC-I GN=rps12p PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.489e-32
Identity = 73/126 (57.94%), Postives = 91/126 (72.22%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSL 459
            G  A RKL   R+  RW+D+ Y +  L  +E   P  G+  AKGIVLEK+G+EAKQPNSAIRKC R+QLIKNG++I AF P DG +N+I+E+DEV I G  GR G + GDIPGVRF+V KV+ VSL
Sbjct:    4 GKFACRKLVHDRKLYRWSDRDYARRVLRLDEKADPLEGAPQAKGIVLEKVGVEAKQPNSAIRKCIRIQLIKNGRQITAFCPGDGAINFIDEHDEVTIEGIGGRMGGSYGDIPGVRFRVFKVNDVSL 129          
The following BLAST results are available for this feature:
BLAST of CV712693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_PYRAR3.544e-3456.9230S ribosomal protein S12P OS=Pyrobaculum arsenati... [more]
RS12_HALWD6.046e-3457.3630S ribosomal protein S12P OS=Haloquadratum walsby... [more]
RS12_STAMF7.896e-3456.1530S ribosomal protein S12P OS=Staphylothermus mari... [more]
RS12_HALMA1.031e-3357.3630S ribosomal protein S12P OS=Haloarcula marismort... [more]
RS12_NATPD1.347e-3357.3630S ribosomal protein S12P OS=Natronomonas pharaon... [more]
RS12_THECE3.000e-3358.9130S ribosomal protein S12P OS=Thermococcus celer G... [more]
RS12_THEPD5.118e-3355.9130S ribosomal protein S12P OS=Thermofilum pendens ... [more]
RS12_PYRKO6.684e-3358.1430S ribosomal protein S12P OS=Pyrococcus kodakarae... [more]
RS12_METTH6.684e-3356.3530S ribosomal protein S12P OS=Methanobacterium the... [more]
RS12_UNCMA1.489e-3257.9430S ribosomal protein S12P OS=Uncultured methanoge... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001M08_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712693 ID=CV712693; Name=CV712693; organism=Citrus sinensis; type=EST; length=746bp
CCCCTCGAGACCTTCTCTTCGCCTTAACTTCTACACAGCCTCGTAGCAGT
CGAGTAACTACAATCAGGAATCATGGGGAAGACACGTGGTATGGGAGCTG
GTCGCAAGCTGAAGACTCACCGTAGGACTCAAAGGTGGGCTGATAAGTCA
TACAAAAAGTCTCACCTTGGCAATGAGTGGAAGAAGCCATTTGCTGGTTC
TTCCCATGCTAAAGGAATTGTTCTTGAGAAGATAGGTATTGAAGCTAAGC
AGCCTAACTCTGCTATTCGTAAGTGTGCTAGAGTTCAACTTATCAAAAAC
GGAAAGAAGATTGCCGCTTTTGTTCCAAATGATGGTTGCTTGAACTATAT
TGAAGAAAATGATGAGGTGTTGATTGCTGGATTTGGACGTAAGGGACATG
CGGTCGGTGATATTCCTGGTGTCAGGTTCAAGGTTGTGAAGGTCTCTGGT
GTCTCTCTCTTGGCTCTCTTCAAAGAGAAGAAAGAGAAGCCCAGGTCTTA
AGAGAAGAGACCTGTCTTAACCTGCAAACTCTTTGATAGTTCTTTTTGAT
ATTCCCAGTGTCAGGTTCAAGGTTGTGAAGGTCTCTGGTGTCTCTCTCTT
GGCTCTCTTCAAAGAGAAGAAGGAGAAACCCAGGTCTTAAGAGAAGAGAC
CTGTCTTAACCTGCAAACTCTTTGATAGTTATTTTAAAGAATTCGGATTG
TCACTTTTTGTTATCGAGTGGATTTTATGAACAATTTTTTATCAAA
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