CV712693

Overview
NameCV712693
Unique NameCV712693
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_ARCFU (30S ribosomal protein S12P OS=Archaeoglobus fulgidus GN=rps12p PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.489e-32
Identity = 73/130 (56.15%), Postives = 95/130 (73.08%), Query Frame = 1
Query:   85 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            RG+ A RKL  +R+  RW+D+ + +  LG   K  P  G+  A+GIVLEKIGIEA+QPNSAIRK  RVQLIKNG++I AF P DG +N+I+E+DEV++    GR G ++GDIPGVR+KVVKV+  SL  L
Sbjct:    3 RGLFAARKLMENRKKFRWSDRRFVRRTLGLAAKADPLEGAPMARGIVLEKIGIEARQPNSAIRKAVRVQLIKNGRQITAFCPGDGAINFIDEHDEVIVEKIGGRMGRSMGDIPGVRYKVVKVNNTSLREL 132          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.945e-32
Identity = 74/129 (57.36%), Postives = 92/129 (71.32%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            G  AGRKLK  R+  RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNS +RK  RVQLIKNGK + AF P DG +N+I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAINFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKEL 137          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_METS3 (30S ribosomal protein S12P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps12p PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.945e-32
Identity = 70/126 (55.56%), Postives = 93/126 (73.81%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSL 459
            G+ A +KLK +R+  +W D  YK+  L  + K  P  G+  A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG + +I+E+DEV+I G  G  G ++GDIPGVR+KV KV+ V+L
Sbjct:    3 GLFAAKKLKKNRQNFKWKDVDYKRKALRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQLTAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVSKVNNVAL 128          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_HYPBU (30S ribosomal protein S12P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps12p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.659e-32
Identity = 71/129 (55.04%), Postives = 96/129 (74.42%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            G+ A RKL+  R   RW+++ +K   LG + K  P  G+  A+GIVLEK+G+EA+QPNSA+RKC RVQLIKNG+ + AFVP DG L  ++E+DEVLI G  G +G ++GDIPGVR++VV V+GVSL A+
Sbjct:    9 GLFAARKLRRKRLKFRWSEREFKIRMLGLKKKYDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLIKNGRIVTAFVPGDGGLLVVDEHDEVLIEGIGGPRGRSMGDIPGVRYRVVTVNGVSLRAI 137          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_HALMO (30S ribosomal protein S12P OS=Halococcus morrhuae GN=rps12p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.659e-32
Identity = 71/129 (55.04%), Postives = 90/129 (69.77%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            G  A RKLK  R+  RW+D  Y +   G  E      G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNG+++ AF P DG +++I+E+DEV IAG  G KG A+GD+  V +KV KV+GVSL+ L
Sbjct:    4 GKYAARKLKKDRQNHRWSDSKYARRARGLKEKTDALEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGQQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSAVNYKVEKVNGVSLIEL 132          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_SULAC (30S ribosomal protein S12P OS=Sulfolobus acidocaldarius GN=rps12p PE=3 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 7.390e-32
Identity = 70/131 (53.44%), Postives = 98/131 (74.81%), Query Frame = 1
Query:   85 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALF 471
            +G+ A RKL+  R    W+ +S+K+  L  + K  P  G+  A+GIVLEK+GIE++QPNSA+RK  RVQL+KNG+ + AFVP DG +N+I+E+DEV+IAG  G  G ++GD+PGVR+KVV V+GVSL AL+
Sbjct:    8 KGLFAARKLRLKRLKFSWSQRSFKRRMLALKEKFDPLEGAPMARGIVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVVMVNGVSLDALY 138          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_METTP (30S ribosomal protein S12P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps12p PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.390e-32
Identity = 68/126 (53.97%), Postives = 92/126 (73.02%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSL 459
            G+ A RK++   +  RW+D  Y +  LG + K  P  G+  A+GIVLEK+G+EAKQPNSAIRKC R+QLIKNG+++ AF P DG + +I+E+DEV++    GR G ++GDIPGVRFKVV V+ VSL
Sbjct:    4 GINAARKMEDDWKKLRWSDPHYCRRALGLKVKADPLGGAPRARGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAIGFIDEHDEVVVERIGGRMGRSMGDIPGVRFKVVAVNNVSL 129          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_IGNH4 (30S ribosomal protein S12P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps12p PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.390e-32
Identity = 71/129 (55.04%), Postives = 95/129 (73.64%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            G+ A RKL+  R   RW+ + +K+  L  + K  P  G+  A+GIVLEK+G+EA++PNSA+RKC RVQL+KNGK + AFVP DG LN I E+DEV+I G  G +G ++GDIPGVR+KVV V+GVSL A+
Sbjct:    9 GLFAARKLERKRLKFRWSQREFKRRMLKLKEKYDPLEGAPMARGIVLEKVGVEARKPNSAVRKCVRVQLVKNGKVVTAFVPGDGGLNVISEHDEVVIVGIGGPRGRSMGDIPGVRYKVVLVNGVSLDAI 137          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_PYRFU (30S ribosomal protein S12P OS=Pyrococcus furiosus GN=rps12p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.652e-32
Identity = 73/129 (56.59%), Postives = 91/129 (70.54%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            G  AGRKLK  R+  RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNS +RK  RVQLIKNGK + AF P DG + +I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKEL 137          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_PYRAB (30S ribosomal protein S12P OS=Pyrococcus abyssi GN=rps12p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.652e-32
Identity = 73/129 (56.59%), Postives = 91/129 (70.54%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            G  AGRKLK  R+  RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNS +RK  RVQLIKNGK + AF P DG + +I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKEL 137          
The following BLAST results are available for this feature:
BLAST of CV712693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_ARCFU1.489e-3256.1530S ribosomal protein S12P OS=Archaeoglobus fulgid... [more]
RS12_PYRHO1.945e-3257.3630S ribosomal protein S12P OS=Pyrococcus horikoshi... [more]
RS12_METS31.945e-3255.5630S ribosomal protein S12P OS=Methanobrevibacter s... [more]
RS12_HYPBU5.659e-3255.0430S ribosomal protein S12P OS=Hyperthermus butylic... [more]
RS12_HALMO5.659e-3255.0430S ribosomal protein S12P OS=Halococcus morrhuae ... [more]
RS12_SULAC7.390e-3253.4430S ribosomal protein S12P OS=Sulfolobus acidocald... [more]
RS12_METTP7.390e-3253.9730S ribosomal protein S12P OS=Methanosaeta thermop... [more]
RS12_IGNH47.390e-3255.0430S ribosomal protein S12P OS=Ignicoccus hospitali... [more]
RS12_PYRFU9.652e-3256.5930S ribosomal protein S12P OS=Pyrococcus furiosus ... [more]
RS12_PYRAB9.652e-3256.5930S ribosomal protein S12P OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001M08_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712693 ID=CV712693; Name=CV712693; organism=Citrus sinensis; type=EST; length=746bp
CCCCTCGAGACCTTCTCTTCGCCTTAACTTCTACACAGCCTCGTAGCAGT
CGAGTAACTACAATCAGGAATCATGGGGAAGACACGTGGTATGGGAGCTG
GTCGCAAGCTGAAGACTCACCGTAGGACTCAAAGGTGGGCTGATAAGTCA
TACAAAAAGTCTCACCTTGGCAATGAGTGGAAGAAGCCATTTGCTGGTTC
TTCCCATGCTAAAGGAATTGTTCTTGAGAAGATAGGTATTGAAGCTAAGC
AGCCTAACTCTGCTATTCGTAAGTGTGCTAGAGTTCAACTTATCAAAAAC
GGAAAGAAGATTGCCGCTTTTGTTCCAAATGATGGTTGCTTGAACTATAT
TGAAGAAAATGATGAGGTGTTGATTGCTGGATTTGGACGTAAGGGACATG
CGGTCGGTGATATTCCTGGTGTCAGGTTCAAGGTTGTGAAGGTCTCTGGT
GTCTCTCTCTTGGCTCTCTTCAAAGAGAAGAAAGAGAAGCCCAGGTCTTA
AGAGAAGAGACCTGTCTTAACCTGCAAACTCTTTGATAGTTCTTTTTGAT
ATTCCCAGTGTCAGGTTCAAGGTTGTGAAGGTCTCTGGTGTCTCTCTCTT
GGCTCTCTTCAAAGAGAAGAAGGAGAAACCCAGGTCTTAAGAGAAGAGAC
CTGTCTTAACCTGCAAACTCTTTGATAGTTATTTTAAAGAATTCGGATTG
TCACTTTTTGTTATCGAGTGGATTTTATGAACAATTTTTTATCAAA
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