CV712693

Overview
NameCV712693
Unique NameCV712693
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_METM7 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps12p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.988e-29
Identity = 68/130 (52.31%), Postives = 86/130 (66.15%), Query Frame = 1
Query:   85 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            +G  AGRKL   RR  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L
Sbjct:    8 KGEFAGRKLLLKRRASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIREL 137          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_METLZ (30S ribosomal protein S12P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps12p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.704e-28
Identity = 67/127 (52.76%), Postives = 86/127 (67.72%), Query Frame = 1
Query:   85 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSL 459
            +G  A R L    +  RW+D  Y +  L  + K  P  G+   + IVLEK+G+EAKQPNSAIRKC RVQLIKNG+++ AF   DG +N+I+E+DEV I G  GR G ++GDIPGVRF V  V+GVSL
Sbjct:    3 QGKFAARNLVRTAKKFRWSDSVYSRRALKLKLKADPLEGAPIGRAIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVTICGIGGRAGRSMGDIPGVRFVVSGVNGVSL 129          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_METMP (30S ribosomal protein S12P OS=Methanococcus maripaludis GN=rps12p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.225e-28
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 1
Query:   85 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            +G  AGRKL   R+  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L
Sbjct:    8 KGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVLVGKNSIREL 137          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_METM5 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps12p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.225e-28
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 1
Query:   85 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            +G  AGRKL   R+  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L
Sbjct:    8 KGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIREL 137          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_METJA (30S ribosomal protein S12P OS=Methanocaldococcus jannaschii GN=rps12p PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.225e-28
Identity = 68/131 (51.91%), Postives = 90/131 (68.70%), Query Frame = 1
Query:   85 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG--RKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            RG  AGRKL+  R+  RW D +Y +  L  + K  P  G+  A+GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+ + AF P +  +N+I+E+DEV+I G G  +   A GDIPGV++KV+ V   SL  L
Sbjct:    8 RGEFAGRKLRLKRKWCRWHDYNYVRRVLKLKEKYDPLEGAPMARGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRVVTAFCPGNHAINFIDEHDEVIIEGIGGPKGPRAKGDIPGVKYKVIMVGRNSLREL 138          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_METVS (30S ribosomal protein S12P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps12p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.796e-28
Identity = 66/130 (50.77%), Postives = 86/130 (66.15%), Query Frame = 1
Query:   85 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            +G  AGRKL   R+  RW    Y    LG + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC +VQLIKNG+ + AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KV+ V   S+  L
Sbjct:    8 KGEFAGRKLLLKRKATRWQHYKYVNRELGLKVKADPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVLMVGKNSIREL 137          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_META3 (30S ribosomal protein S12P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps12p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.460e-27
Identity = 65/130 (50.00%), Postives = 84/130 (64.62%), Query Frame = 1
Query:   85 RGMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 468
            +G  AGRK+   R+  RW    Y    L   E   P  G+   +GIV+EK+G+EAKQPNSAIRKC +VQLIKNG+ + AF P +  +N+I+E+DEV+I G  G  G A GDIPGVRF+VV V   S+  L
Sbjct:    8 KGEFAGRKIVLKRKESRWHHYKYVNKALKLKEKSDPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRFRVVMVGKNSMREL 137          
BLAST of CV712693 vs. ExPASy Swiss-Prot
Match: RS12_NANEQ (30S ribosomal protein S12P OS=Nanoarchaeum equitans GN=rps12p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.007e-25
Identity = 65/126 (51.59%), Postives = 81/126 (64.29%), Query Frame = 1
Query:   88 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSL 459
            G+ AGRKLK  R+  RW D  Y +  L  + K  P  G+  A GIVLEK  +E +QPNS   K  RVQL KNGK + AF P DG +  I+E+DEVLI G  GR+G ++GDIPGVR+KV  V+G  L
Sbjct:    5 GLFAGRKLKKIRKKFRWNDYRYVRRMLRIKEKYDPLEGAPMASGIVLEKTDVERRQPNSGRIKVVRVQLKKNGKVVTAFTPGDGAIKVIDEHDEVLIVGIRGRQGRSMGDIPGVRYKVYLVNGQPL 130          
The following BLAST results are available for this feature:
BLAST of CV712693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_METM79.988e-2952.3130S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METLZ1.704e-2852.7630S ribosomal protein S12P OS=Methanocorpusculum l... [more]
RS12_METMP2.225e-2851.5430S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METM52.225e-2851.5430S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METJA2.225e-2851.9130S ribosomal protein S12P OS=Methanocaldococcus j... [more]
RS12_METVS3.796e-2850.7730S ribosomal protein S12P OS=Methanococcus vannie... [more]
RS12_META32.460e-2750.0030S ribosomal protein S12P OS=Methanococcus aeolic... [more]
RS12_NANEQ3.007e-2551.5930S ribosomal protein S12P OS=Nanoarchaeum equitan... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001M08_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712693 ID=CV712693; Name=CV712693; organism=Citrus sinensis; type=EST; length=746bp
CCCCTCGAGACCTTCTCTTCGCCTTAACTTCTACACAGCCTCGTAGCAGT
CGAGTAACTACAATCAGGAATCATGGGGAAGACACGTGGTATGGGAGCTG
GTCGCAAGCTGAAGACTCACCGTAGGACTCAAAGGTGGGCTGATAAGTCA
TACAAAAAGTCTCACCTTGGCAATGAGTGGAAGAAGCCATTTGCTGGTTC
TTCCCATGCTAAAGGAATTGTTCTTGAGAAGATAGGTATTGAAGCTAAGC
AGCCTAACTCTGCTATTCGTAAGTGTGCTAGAGTTCAACTTATCAAAAAC
GGAAAGAAGATTGCCGCTTTTGTTCCAAATGATGGTTGCTTGAACTATAT
TGAAGAAAATGATGAGGTGTTGATTGCTGGATTTGGACGTAAGGGACATG
CGGTCGGTGATATTCCTGGTGTCAGGTTCAAGGTTGTGAAGGTCTCTGGT
GTCTCTCTCTTGGCTCTCTTCAAAGAGAAGAAAGAGAAGCCCAGGTCTTA
AGAGAAGAGACCTGTCTTAACCTGCAAACTCTTTGATAGTTCTTTTTGAT
ATTCCCAGTGTCAGGTTCAAGGTTGTGAAGGTCTCTGGTGTCTCTCTCTT
GGCTCTCTTCAAAGAGAAGAAGGAGAAACCCAGGTCTTAAGAGAAGAGAC
CTGTCTTAACCTGCAAACTCTTTGATAGTTATTTTAAAGAATTCGGATTG
TCACTTTTTGTTATCGAGTGGATTTTATGAACAATTTTTTATCAAA
back to top