CV712690

Overview
NameCV712690
Unique NameCV712690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712690 vs. ExPASy Swiss-Prot
Match: OLEO2_ORYSI (Oleosin 18 kDa OS=Oryza sativa subsp. indica GN=OLE18 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 42/119 (35.29%), Postives = 62/119 (52.10%), Query Frame = 2
Query:   83 LQSRQPRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQVRMKLASKAREMRDRAEQ 439
            L  + P + Q          GG LLVLSGL +A +V+ L +ATP+ +I SPVLVPA + + L + GFL SG  G+  +S L+++            D +EQ R ++A  A     +  Q
Sbjct:   26 LPEKAPSASQALTVATLFPLGGLLLVLSGLALAASVVGLAVATPVFLIFSPVLVPAALLIGLAVAGFLTSGALGLGGLSSLTFLANTARQAFQRTPDYVEQARRRMAEAAAHAGHKTAQ 144          
BLAST of CV712690 vs. ExPASy Swiss-Prot
Match: OLEO3_MAIZE (Oleosin Zm-II OS=Zea mays GN=OLE18 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 40/119 (33.61%), Postives = 61/119 (51.26%), Query Frame = 2
Query:   83 LQSRQPRSHQXXXXXXXXXXGGSLLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPPGADQLEQVRMKLASKAREMRDRAEQ 439
            L  + P + Q          GG LLVLSGL +  +V+ L +ATP+ +I SPVLVPA + +   +MGFL SG  G+  +S L+ +            D +E+ R ++A  A +   +  Q
Sbjct:   39 LHDKGPTASQALTVATLFPLGGLLLVLSGLALTASVVGLAVATPVFLIFSPVLVPAALLIGTAVMGFLTSGALGLGGLSSLTCLANTARQAFQRTPDYVEEARRRMAEAAAQAGHKTAQ 157          
BLAST of CV712690 vs. ExPASy Swiss-Prot
Match: OLNB1_BRANA (Oleosin-B1 OS=Brassica napus GN=OlnB1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  152 LLVLSGLTMAGTVIALTIATPLLVICSPVLVPAVITVSLLIMGFLASGGFGVAAISVLSWIYRYVTGGHPP 364
            LL++SG+++AGT  A     PL V+ SP+LVPA IT  LL  G  A+GG G  A++++ W+Y+  TG  PP
Sbjct:   31 LLLISGVSLAGTAAAFIATMPLFVVFSPILVPAGITTGLLTTGLAAAGGAGATAVTIILWLYKRATGKEPP 101          
The following BLAST results are available for this feature:
BLAST of CV712690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
OLEO2_ORYSI3.633e-1435.29Oleosin 18 kDa OS=Oryza sativa subsp. indica GN=OL... [more]
OLEO3_MAIZE2.355e-1333.61Oleosin Zm-II OS=Zea mays GN=OLE18 PE=1 SV=1[more]
OLNB1_BRANA6.852e-1346.48Oleosin-B1 OS=Brassica napus GN=OlnB1 PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001M06_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712690 ID=CV712690; Name=CV712690; organism=Citrus sinensis; type=EST; length=697bp
TTATCATCGACAAATAATCGCCGTTAGATTTAACATCAACACTGATATGG
CTGAACATTACCAACCACACGAGCAGACACAGCTGCAGAGCCGTCAGCCC
CGGTCCCACCAGGTCGTGAAGGCGGCAACCGCCGTCACAGCCGGTGGGTC
TCTGTTGGTCCTCTCTGGCTTAACCATGGCTGGGACTGTCATTGCACTGA
CCATTGCTACTCCACTGCTAGTCATATGTAGTCCTGTTCTTGTCCCTGCG
GTTATCACCGTTTCTCTTCTCATCATGGGGTTCTTGGCCTCTGGCGGATT
CGGTGTAGCAGCCATCAGCGTCTTATCATGGATTTATAGGTATGTCACAG
GGGGGCACCCACCAGGGGCGGATCAGCTGGAGCAGGTGCGGATGAAGCTG
GCCAGTAAGGCTAGGGAGATGAGGGACAGGGCTGAGCAGTTTGGGCAGCA
GCAAAGCACTGGCTCGCAGCCGGGTTCTTAAACTACGTAGTTATGCATGT
GATGAAGGGTTGTTGGTTGATAAAGATATGGGTGGAGATCAAACGGCTAT
GATACTAGTTGAGGGGTCATTGGTTGTCTTTTGTGTTAATTTGTGTCAAT
GTGTTTTTTCCTTTTTTGTATTCGTGGTAATCTTTGTAATAAGTTTTGTT
AATGTGGTGGGGCGCTCTTGCAGGGTTTTTATTATTGGTCTTTGAAA
back to top