CV712683

Overview
NameCV712683
Unique NameCV712683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_POPAL (Cytochrome c biogenesis protein ccsA OS=Populus alba GN=ccsA PE=3 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 1.061e-93
Identity = 170/252 (67.46%), Postives = 191/252 (75.79%), Query Frame = 2
Query:    5 PLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSL--SARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            P+SDLYE            H +  FK ++N+LS ITAPS FFTQGFAT G LT MHQS+ILVPALQ QWL+MHVSMMV GY              VITFRKVIR+  K  N +  N SF   EIQYM EKK++F N+   S+RNYYR+Q+IQQLD W +RI+S+GF+FLT GILSGAVWANEAWGSYWNWDPKETWAFITWTIF IY HTRTN   EG+NSAIVAS+GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   67 PISDLYESLIFLSWIFSIIHMVPYFKKHKNYLSTITAPSTFFTQGFATWGLLTDMHQSKILVPALQSQWLIMHVSMMVSGYAALLCGSLLSAALLVITFRKVIRIVGKNNNLL--NDSFPVDEIQYMMEKKSIFKNTFFPSSRNYYRFQLIQQLDHWGFRILSIGFLFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYFHTRTNKNLEGLNSAIVASIGFLIIWICYFGVNLLGIGLHSYGSF 316          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_CUCSA (Cytochrome c biogenesis protein ccsA OS=Cucumis sativus GN=ccsA PE=3 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 3.087e-93
Identity = 174/254 (68.50%), Postives = 189/254 (74.41%), Query Frame = 2
Query:    5 PLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLS--AITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            PLSDLYE            H    FK  +NHLS  AITAPS  FTQGFATSGFLT+MHQS +LVPALQ  WLMMHVSMMVLGY              VITF+K IR+F K  N +  N  F F+EIQY+NE      N+   S++NYY+ Q+IQQLD WSYRIISLGFIFL+ GILSGAVWANE WGSYWNWDPKETWAFITWTIF IYLHTRTN  +EGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   67 PLSDLYESLLFLSWAFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFATSGFLTEMHQSPLLVPALQSHWLMMHVSMMVLGYAALLCGSLFSVALIVITFQKAIRIFCKNNNLL--NALFSFNEIQYINEGNYFVRNTSFFSSKNYYKSQLIQQLDHWSYRIISLGFIFLSIGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHTRTNKNFEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 318          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_POPTR (Cytochrome c biogenesis protein ccsA OS=Populus trichocarpa GN=ccsA PE=3 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 5.266e-93
Identity = 169/252 (67.06%), Postives = 190/252 (75.40%), Query Frame = 2
Query:    5 PLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSL--SARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            P+SDLYE            H +  FK ++N+LS ITAPS FFTQGFAT G LT MHQS+ILVPALQ QWL+MHVSMMV GY              VITFRKVIR+  K  N +  N SF   EIQYM EKK++  N+   S+RNYYR+Q+IQQLD W +RI+S+GF+FLT GILSGAVWANEAWGSYWNWDPKETWAFITWTIF IY HTRTN   EG+NSAIVAS+GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   67 PISDLYESLIFLSWIFSIIHMVPYFKKHKNYLSTITAPSTFFTQGFATWGLLTDMHQSKILVPALQSQWLIMHVSMMVSGYAALLCGSLLSAALLVITFRKVIRIVGKNNNLL--NDSFPVDEIQYMMEKKSILKNTFFPSSRNYYRFQLIQQLDHWGFRILSIGFLFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYFHTRTNKNLEGLNSAIVASIGFLIIWICYFGVNLLGIGLHSYGSF 316          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_LIRTU (Cytochrome c biogenesis protein ccsA OS=Liriodendron tulipifera GN=ccsA PE=3 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 1.173e-92
Identity = 173/253 (68.38%), Postives = 189/253 (74.70%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H +    N++N LSAITAPSA FTQGFATSG  T+MHQS ILVPALQ QWLMMHVSMM+L Y              VITFRK I +  K  + +   GSF F EI Y+NEK+NV  N+  LS RNY+RYQ+ Q+LD WSYR+ISLGF FLT GILSGAVWANEAWGSYWNWDPKETWAFITWTIF IYLHTRTN   +GVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLMFLSWSFSIIHMVPKIWNHKNDLSAITAPSAIFTQGFATSGLSTEMHQSAILVPALQSQWLMMHVSMMLLSYAALLCGSLLSVALLVITFRKNIGIVGKSNHLLI--GSFSFDEIHYLNEKRNVLQNTSFLSFRNYHRYQLTQRLDYWSYRVISLGFTFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHTRTNRSLQGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 316          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_CERDE (Cytochrome c biogenesis protein ccsA OS=Ceratophyllum demersum GN=ccsA PE=3 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 2.613e-92
Identity = 169/253 (66.80%), Postives = 189/253 (74.70%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H +  F N++N LS IT PSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y              VITFR+ I LF KR   +   G F F EIQY+NEK++V  N+  LS +NY+RYQ+ ++LD WSYRIISLGF FLT GILSGAVWANEAWGSYWNWDPKETWAFITWT+F IYLHTRTN  ++  NSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLMFLSWSFSIIHMVPYFGNHKNDLSVITNPSAIFTQGFATSGLLTEMHQSSILVPALQSQWLMMHVSMMLLSYAALLCGSLLSVALLVITFRQSIDLFFKRDQLL--TGGFSFGEIQYLNEKRSVLQNTSFLSFKNYHRYQLTRRLDHWSYRIISLGFTFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTVFAIYLHTRTNQNFQSANSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 316          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_ACOCL (Cytochrome c biogenesis protein ccsA OS=Acorus calamus GN=ccsA PE=3 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 7.604e-92
Identity = 170/253 (67.19%), Postives = 190/253 (75.10%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSL--SARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H +  F+N++NH SAITAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y              VITFRK   +F KR NF+    SF F EI+Y+NEK++V  N+   S  NY++YQ+ Q+LD WSYR+ISLGFIFLT GILSGAVWANEAWGSYWNWDPKE WAFITW IF IYLHTRTN   +G NSAIVAS+GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLIFLSWSFSIIHMVPYFRNHRNHFSAITAPSAIFTQGFATSGLLTEMHQSIILVPALQSQWLMMHVSMMLLSYAALLCGSLLSVALLVITFRKNSDIFDKRNNFLI--RSFFFGEIEYLNEKRSVLQNTSFDSFTNYHKYQLTQRLDFWSYRVISLGFIFLTIGILSGAVWANEAWGSYWNWDPKEIWAFITWAIFAIYLHTRTNHSLQGANSAIVASIGFLIIWICYFGVNLLGIGLHSYGSF 316          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_ACOAM (Cytochrome c biogenesis protein ccsA OS=Acorus americanus GN=ccsA PE=3 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 7.604e-92
Identity = 170/253 (67.19%), Postives = 190/253 (75.10%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSL--SARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H +  F+N++NH SAITAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y              VITFRK   +F KR NF+    SF F EI+Y+NEK++V  N+   S  NY++YQ+ Q+LD WSYR+ISLGFIFLT GILSGAVWANEAWGSYWNWDPKE WAFITW IF IYLHTRTN   +G NSAIVAS+GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLIFLSWSFSIIHMVPYFRNHRNHFSAITAPSAIFTQGFATSGLLTEMHQSIILVPALQSQWLMMHVSMMLLSYAALLCGSLLSVALLVITFRKNSDIFDKRNNFLI--RSFFFGEIEYLNEKRSVLQNTSFDSFTNYHKYQLTQRLDFWSYRVISLGFIFLTIGILSGAVWANEAWGSYWNWDPKEIWAFITWAIFAIYLHTRTNHSLQGANSAIVASIGFLIIWICYFGVNLLGIGLHSYGSF 316          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_NANDO (Cytochrome c biogenesis protein ccsA OS=Nandina domestica GN=ccsA PE=3 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.212e-91
Identity = 170/253 (67.19%), Postives = 188/253 (74.31%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H +  F N++N LS ITAPSA FTQGFATSG LT+MH+S  LVPALQ QWLMMHVSMM+L Y              VITFRK +  F K K+   + G F F EI+Y+NE  NV  N+  +S RN+ RYQVIQQLD WS R+ISLGFIFLT GILSGAVWANEAWGSYWNWDPKETWAFITWTIF IYLHTRTN   +G+NSAIVAS+GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLMFLSWSFSIIHMVPYFTNHKNLLSTITAPSAIFTQGFATSGLLTEMHRSTKLVPALQSQWLMMHVSMMILSYAALLCGSLLSIALLVITFRKNVENFGKSKSNPFLIGPFSFGEIKYVNEINNVLRNTFLISFRNFRRYQVIQQLDCWSCRVISLGFIFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHTRTNKNLQGINSAIVASIGFLIIWICYFGVNLLGIGLHSYGSF 318          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_SPIOL (Cytochrome c biogenesis protein ccsA OS=Spinacia oleracea GN=ccsA PE=3 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 8.407e-91
Identity = 172/255 (67.45%), Postives = 190/255 (74.51%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRK-VIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSA--RNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H I  F K  +N L+ ITAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMMVLGY              +I F+K +I++F KRK+ +  N SF F EIQY+NEK N+  N+  +  RNYYR Q+I+QLD WSYR+ISLGFIFLT GILSGAVWANEAWGSYWNWDPKETWAFITWTIF IYLH RTN    G NSAIVA +GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLIFLSWSFYLIHMIPSFLKKEKNSLNVITAPSAIFTQGFATSGLLTEMHQSGILVPALQSQWLMMHVSMMVLGYAALLGGSLLSVTLLIIIFQKDLIQVFDKRKHLL--NESFFFGEIQYINEKSNIVQNASPSYVRNYYRSQLIEQLDHWSYRVISLGFIFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHIRTNKNLRGANSAIVAFIGFLIIWICYFGVNLLGIGLHSYGSF 318          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_OENEH (Cytochrome c biogenesis protein ccsA OS=Oenothera elata subsp. hookeri GN=ccsA PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 3.195e-90
Identity = 166/256 (64.84%), Postives = 189/256 (73.83%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSFN*H 763
            FPLS+LYE            H    FK  ++++  IT+ S  FTQG  TSG L++M QS ILVPALQ QWLMMHVSMMVLGY              VITFRK +R+F K+K F+    SF F EIQY NE  NV L++  +S++NYYR Q+IQQLDRWS RIISLGFIFLT GILSGAVWANEAWGSYWNWDPKETWAFITWT+F IYLHTRTN  ++ VNSAIVA +GF+IIWICYFGVNLLGIGLHSYGSFN H
Sbjct:   66 FPLSNLYESLLFLSWSFAIIHMFPYFKKQKSYVRTITSSSTIFTQGLVTSGLLSEMQQSEILVPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKALRIFSKKKAFL--KDSFSFVEIQYRNEPSNVLLSTSFISSKNYYRAQLIQQLDRWSSRIISLGFIFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTMFAIYLHTRTNPNFQSVNSAIVAFLGFIIIWICYFGVNLLGIGLHSYGSFNLH 319          
The following BLAST results are available for this feature:
BLAST of CV712683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
CCSA_POPAL1.061e-9367.46Cytochrome c biogenesis protein ccsA OS=Populus al... [more]
CCSA_CUCSA3.087e-9368.50Cytochrome c biogenesis protein ccsA OS=Cucumis sa... [more]
CCSA_POPTR5.266e-9367.06Cytochrome c biogenesis protein ccsA OS=Populus tr... [more]
CCSA_LIRTU1.173e-9268.38Cytochrome c biogenesis protein ccsA OS=Liriodendr... [more]
CCSA_CERDE2.613e-9266.80Cytochrome c biogenesis protein ccsA OS=Ceratophyl... [more]
CCSA_ACOCL7.604e-9267.19Cytochrome c biogenesis protein ccsA OS=Acorus cal... [more]
CCSA_ACOAM7.604e-9267.19Cytochrome c biogenesis protein ccsA OS=Acorus ame... [more]
CCSA_NANDO2.212e-9167.19Cytochrome c biogenesis protein ccsA OS=Nandina do... [more]
CCSA_SPIOL8.407e-9167.45Cytochrome c biogenesis protein ccsA OS=Spinacia o... [more]
CCSA_OENEH3.195e-9064.84Cytochrome c biogenesis protein ccsA OS=Oenothera ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001M02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712683 ID=CV712683; Name=CV712683; organism=Citrus sinensis; type=EST; length=831bp
TTTCCCATTAAGTGATTTATATGAATCATTAATCTTTCTTTCATGGAGTT
TATCTATTATTCATAAGATTTTTGATTTTAAAAATAATCAAAATCATTTA
AGCGCTATAACGGCACCAAGTGCTTTTTTTACCCAAGGCTTTGCGACTTC
GGGTTTTTTAACCAAAATGCATCAATCCAGAATATTAGTACCCGCTCTCC
AAGTCCAGTGGTTAATGATGCACGTAAGTATGATGGTATTGGGCTATGCA
GCTCTTTTATGTGGATCATTATTATCCACGGCTCTTCTAGTCATTACATT
TCGAAAAGTGATAAGGCTTTTTTTGAAAAGAAAAAATTTTGTACATGTAA
ATGGGTCATTTTGTTTCAGTGAAATCCAATACATGAACGAAAAAAAGAAT
GTTTTTCTAAATAGTCTTTCCGCTAGAAATTATTACAGGTATCAAGTGAT
TCAACAATTGGATCGTTGGAGTTATCGTATTATTAGTTTAGGATTTATCT
TTTTAACCACAGGTATTCTTTCGGGAGCAGTATGGGCTAATGAGGCGTGG
GGGTCTTATTGGAATTGGGATCCAAAAGAAACTTGGGCATTTATTACTTG
GACGATATTCGGGATTTATTTACATACTCGAACAAATACAAAATGGGAAG
GTGTAAATTCCGCAATTGTGGCTTCTATGGGCTTTCTTATAATTTGGATA
TGCTATTTCGGAGTCAATCTATTAGGAATAGGGTTACATAGTTATGGTTC
ATTTAATTAACACCTATTTGAATTGAAGAAAGGGTTTGATGAATACAAAC
ATAGGACAGCGCGGAGATCGAAACGAAACTT
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