CV712683

Overview
NameCV712683
Unique NameCV712683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_OENBI (Cytochrome c biogenesis protein ccsA OS=Oenothera biennis GN=ccsA PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 3.195e-90
Identity = 166/256 (64.84%), Postives = 189/256 (73.83%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSFN*H 763
            FPLS+LYE            H    FK  ++++  IT+ S  FTQG  TSG L++M QS ILVPALQ QWLMMHVSMMVLGY              VITFRK +R+F K+K F+    SF F EIQY NE  NV L++  +S++NYYR Q+IQQLDRWS RIISLGFIFLT GILSGAVWANEAWGSYWNWDPKETWAFITWT+F IYLHTRTN  ++ VNSAIVA +GF+IIWICYFGVNLLGIGLHSYGSFN H
Sbjct:   66 FPLSNLYESLLFLSWSFAIIHMFPYFKKQKSYVRTITSSSTIFTQGLVTSGLLSEMQQSEILVPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKALRIFSKKKAFL--KDSFSFVEIQYRNEPSNVLLSTSFISSKNYYRAQLIQQLDRWSSRIISLGFIFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTMFAIYLHTRTNPNFQSVNSAIVAFLGFIIIWICYFGVNLLGIGLHSYGSFNLH 319          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_PANGI (Cytochrome c biogenesis protein ccsA OS=Panax ginseng GN=ccsA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 4.172e-90
Identity = 167/252 (66.27%), Postives = 184/252 (73.02%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSL-SARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H +  FK  + +LS ITA S  FTQGFATSG LT++HQS ILVPALQ +WL+MHVSMM+L Y              VITFRK   +F KR   +  N  F F EIQYMNE+ NV   +  SA+NYYR Q+IQQLD WSYR+ISLGFIFLT GILSGAVWANEAWGSYWNWDPKETWAFITW +F IYLHTRTN K  G NSAIVAS+GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLIFLSWSLSVIHIVPYFKKKKKNLSTITASSVIFTQGFATSGLLTEIHQSAILVPALQSEWLIMHVSMMILSYAALLCGSLLSVALLVITFRKNRNIFCKRNPLL--NELFSFGEIQYMNERNNVLRTTFFSAKNYYRSQLIQQLDYWSYRVISLGFIFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWIVFAIYLHTRTNIKLRGANSAIVASIGFLIIWICYFGVNLLGIGLHSYGSF 315          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_OENGL (Cytochrome c biogenesis protein ccsA OS=Oenothera glazioviana GN=ccsA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 4.172e-90
Identity = 166/256 (64.84%), Postives = 188/256 (73.44%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSFN*H 763
            FPLS+LYE            H    FK   +++  IT+ S  FTQG  TSG L++M QS ILVPALQ QWLMMHVSMMVLGY              VITFRK +R+F K+K F+    SF F EIQY NE  NV L++  +S++NYYR Q+IQQLDRWS RIISLGFIFLT GILSGAVWANEAWGSYWNWDPKETWAFITWT+F IYLHTRTN  ++ VNSAIVA +GF+IIWICYFGVNLLGIGLHSYGSFN H
Sbjct:   66 FPLSNLYESLLFLSWSFAIIHMFPYFKKQNSYVRTITSSSTIFTQGLVTSGLLSEMQQSEILVPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKALRIFSKKKAFL--KDSFSFVEIQYRNEPSNVLLSTSFISSKNYYRAQLIQQLDRWSSRIISLGFIFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTMFAIYLHTRTNPNFQSVNSAIVAFLGFIIIWICYFGVNLLGIGLHSYGSFNLH 319          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_DRIGR (Cytochrome c biogenesis protein ccsA OS=Drimys granadensis GN=ccsA PE=3 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 9.295e-90
Identity = 167/253 (66.01%), Postives = 190/253 (75.10%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSL--SARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H +    N++N LSAIT PSA FTQGFATS  LT+MHQS ILVPALQ QWLMMHVSMM+L Y              VITFRK   + +K  N++ + G+F F EIQY+NEK++V  N+   S RNY+RY++ Q+LD WSYR+ISLGFIF T GILSGAVWANEAWGSYWNWDPKETWAFITWTIF IYLHTRTN   +GVNS+IVAS+GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLMFLSWSFSIIHMVPKAGNHKNDLSAITGPSAIFTQGFATSDLLTEMHQSAILVPALQSQWLMMHVSMMLLSYAALLCGALLSVAFLVITFRKNTDIAVK-SNYLLI-GTFSFGEIQYLNEKRSVLQNTSFPSFRNYHRYRLTQRLDHWSYRVISLGFIFSTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHTRTNQSLQGVNSSIVASIGFLIIWICYFGVNLLGIGLHSYGSF 316          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_OENAR (Cytochrome c biogenesis protein ccsA OS=Oenothera argillicola GN=ccsA PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 3.532e-89
Identity = 164/256 (64.06%), Postives = 188/256 (73.44%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSFN*H 763
            FPLS+LYE            H     K  ++++  IT+ S  FTQG  TSG L++M QS ILVPALQ QWLMMHVSMMVLGY              VITFRK +++F K+K F+    SF F EIQY NE  NV L++  +S++NYYR Q+IQQLDRWS RIISLGFIFLT GILSGAVWANEAWGSYWNWDPKETWAFITWT+F IYLHTRTN  ++ VNSAIVA +GF+IIWICYFGVNLLGIGLHSYGSFN H
Sbjct:   66 FPLSNLYESLLFLSWSFAIIHMFPYLKKQKSYVRTITSSSTIFTQGLVTSGLLSEMQQSEILVPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKALKIFSKKKAFL--KDSFSFVEIQYRNEPSNVLLSTSFISSKNYYRAQLIQQLDRWSSRIISLGFIFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTMFAIYLHTRTNPNFQSVNSAIVAFLGFIIIWICYFGVNLLGIGLHSYGSFNLH 319          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_CALFG (Cytochrome c biogenesis protein ccsA OS=Calycanthus floridus var. glaucus GN=ccsA PE=3 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 6.025e-89
Identity = 168/255 (65.88%), Postives = 188/255 (73.73%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFL----NSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H +  F+N++N LSAITAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+LGY              VITFRK + +  K  +F+   GSF F EI+Y NEK+   +    +  S RNY+RYQ+ Q+LD  SYRIISLGF F T GILSGAVWANEAWGSYWNWDPKETWAFITWTIF IYLHTRTN +++ V  AIVASMGFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLMFLSWSFSIIHMVPYFRNHKNSLSAITAPSAIFTQGFATSGLLTEMHQSAILVPALQSQWLMMHVSMMLLGYASLLCGSLLSVALLVITFRKTLGIPGKNNHFLI--GSFPFGEIRYFNEKRKRSVLKKTSFFSFRNYHRYQLTQRLDHCSYRIISLGFTFSTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHTRTNQRFQDVGPAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 318          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_OLIPU (Cytochrome c biogenesis protein ccsA OS=Olimarabidopsis pumila GN=ccsA PE=3 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 1.028e-88
Identity = 168/258 (65.12%), Postives = 186/258 (72.09%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKR--KNFVHVNGSFCFSEIQYMNEKKNVFL----NSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H +  F K  QNHL+AITAPSA F QGFATSG L KM QS ILVPALQ QWLMMHVSMM+LGY              VITFRKV   F K+  K  V +N  F F  + Y+NE+ ++ L    N   +RNYYRYQ+IQQLD WS+RIISLGFIFLT GILSGAVWANE WGSYWNWDPKETWAFITWTIF IYLH +TN    G+NSAIVAS+GFL+IWICYFGVNLLGIGLHSYGSF
Sbjct:   68 FPLSNLYESLIFLSWAFSIIHMVSYFNKKQQNHLNAITAPSAIFIQGFATSGLLNKMPQSAILVPALQSQWLMMHVSMMILGYGALLCGSLLSIALLVITFRKVGPTFWKKNIKKNVLLNELFSFDVLYYINERNSILLQQNINFSFSRNYYRYQLIQQLDYWSFRIISLGFIFLTVGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVRGINSAIVASIGFLLIWICYFGVNLLGIGLHSYGSF 325          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_OENPA (Cytochrome c biogenesis protein ccsA OS=Oenothera parviflora GN=ccsA PE=3 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.342e-88
Identity = 164/256 (64.06%), Postives = 187/256 (73.05%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSFN*H 763
            FPLS+LYE            H     K  ++++  IT+ S  FTQG  TSG L++M QS ILVPALQ QWLMMHVSMMVLGY              VITFRK  ++F K+K F+    SF F EIQY NE  NV L++  +S++NYYR Q+IQQLDRWS RIISLGFIFLT GILSGAVWANEAWGSYWNWDPKETWAFITWT+F IYLHTRTN  ++ VNSAIVA +GF+IIWICYFGVNLLGIGLHSYGSFN H
Sbjct:   66 FPLSNLYESLLFLSWSFAIIHMFPYLKKQKSYVRTITSSSTIFTQGLVTSGLLSEMQQSEILVPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKARKIFSKKKAFL--KDSFSFVEIQYRNEPSNVLLSTSFISSKNYYRAQLIQQLDRWSSRIISLGFIFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTMFAIYLHTRTNPNFQSVNSAIVAFLGFIIIWICYFGVNLLGIGLHSYGSFNLH 319          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_CHLSC (Cytochrome c biogenesis protein ccsA OS=Chloranthus spicatus GN=ccsA PE=3 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.753e-88
Identity = 165/255 (64.71%), Postives = 185/255 (72.55%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVF----LNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H +   +N+ N LS ITAPS  FTQGF TSG LTKMHQS ILVPALQ +WLMMHVSMM+L Y              VITFRK I + L + N + + GSF F + QY+NEK+++      + LS RNY+RYQ+  +LD WSYR+ISLGF FLT GILSGAVWANEAWGSYWNWDPKETWAFITWTIF IY HTRTN   +G NSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   65 FPLSDLYESLIFLSWSFAIIHMVPKIRNHPNSLSTITAPSTIFTQGFTTSGLLTKMHQSTILVPALQSKWLMMHVSMMLLSYAALLCGSLLSIALLVITFRKNIDI-LGKSNHLFI-GSFSFGKTQYLNEKRSLLHLQKASFLSFRNYHRYQLTHRLDYWSYRVISLGFTFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYSHTRTNKSLQGANSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 317          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_LOTJA (Cytochrome c biogenesis protein ccsA OS=Lotus japonicus GN=ccsA PE=3 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 2.289e-88
Identity = 165/254 (64.96%), Postives = 185/254 (72.83%), Query Frame = 2
Query:    5 PLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQY--MNEKKNVFLNSL--SARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            P SDLYE            + +  FK  +N LS I APS  FTQGFATSG LT+MHQS ILVPALQ  WLMMHVSMM+LGY              VITF+++I +  K K    +  SF ++EI+Y  MNE+ NV   +   S RNYYRYQ IQQLDRW YRIISLGFIFLT GILSGAVWANEAWGSYWNWDPKETWAFITWTIF IYLH+R N K EG+NS+IVAS+GFLIIWICYFGVNLLGIGLH+YGSF
Sbjct:   67 PFSDLYESLIFLSWGFSIFYMVPRFKKQKNDLSTIIAPSVIFTQGFATSGLLTEMHQSVILVPALQSHWLMMHVSMMILGYAALLCGSLLSVAILVITFQELIPILGKSKRLSFLYESFDYAEIKYINMNERNNVLRKTSFSSYRNYYRYQFIQQLDRWGYRIISLGFIFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHSRKNKKLEGLNSSIVASIGFLIIWICYFGVNLLGIGLHNYGSF 320          
The following BLAST results are available for this feature:
BLAST of CV712683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
CCSA_OENBI3.195e-9064.84Cytochrome c biogenesis protein ccsA OS=Oenothera ... [more]
CCSA_PANGI4.172e-9066.27Cytochrome c biogenesis protein ccsA OS=Panax gins... [more]
CCSA_OENGL4.172e-9064.84Cytochrome c biogenesis protein ccsA OS=Oenothera ... [more]
CCSA_DRIGR9.295e-9066.01Cytochrome c biogenesis protein ccsA OS=Drimys gra... [more]
CCSA_OENAR3.532e-8964.06Cytochrome c biogenesis protein ccsA OS=Oenothera ... [more]
CCSA_CALFG6.025e-8965.88Cytochrome c biogenesis protein ccsA OS=Calycanthu... [more]
CCSA_OLIPU1.028e-8865.12Cytochrome c biogenesis protein ccsA OS=Olimarabid... [more]
CCSA_OENPA1.342e-8864.06Cytochrome c biogenesis protein ccsA OS=Oenothera ... [more]
CCSA_CHLSC1.753e-8864.71Cytochrome c biogenesis protein ccsA OS=Chloranthu... [more]
CCSA_LOTJA2.289e-8864.96Cytochrome c biogenesis protein ccsA OS=Lotus japo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001M02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712683 ID=CV712683; Name=CV712683; organism=Citrus sinensis; type=EST; length=831bp
TTTCCCATTAAGTGATTTATATGAATCATTAATCTTTCTTTCATGGAGTT
TATCTATTATTCATAAGATTTTTGATTTTAAAAATAATCAAAATCATTTA
AGCGCTATAACGGCACCAAGTGCTTTTTTTACCCAAGGCTTTGCGACTTC
GGGTTTTTTAACCAAAATGCATCAATCCAGAATATTAGTACCCGCTCTCC
AAGTCCAGTGGTTAATGATGCACGTAAGTATGATGGTATTGGGCTATGCA
GCTCTTTTATGTGGATCATTATTATCCACGGCTCTTCTAGTCATTACATT
TCGAAAAGTGATAAGGCTTTTTTTGAAAAGAAAAAATTTTGTACATGTAA
ATGGGTCATTTTGTTTCAGTGAAATCCAATACATGAACGAAAAAAAGAAT
GTTTTTCTAAATAGTCTTTCCGCTAGAAATTATTACAGGTATCAAGTGAT
TCAACAATTGGATCGTTGGAGTTATCGTATTATTAGTTTAGGATTTATCT
TTTTAACCACAGGTATTCTTTCGGGAGCAGTATGGGCTAATGAGGCGTGG
GGGTCTTATTGGAATTGGGATCCAAAAGAAACTTGGGCATTTATTACTTG
GACGATATTCGGGATTTATTTACATACTCGAACAAATACAAAATGGGAAG
GTGTAAATTCCGCAATTGTGGCTTCTATGGGCTTTCTTATAATTTGGATA
TGCTATTTCGGAGTCAATCTATTAGGAATAGGGTTACATAGTTATGGTTC
ATTTAATTAACACCTATTTGAATTGAAGAAAGGGTTTGATGAATACAAAC
ATAGGACAGCGCGGAGATCGAAACGAAACTT
back to top