CV712683

Overview
NameCV712683
Unique NameCV712683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_JASNU (Cytochrome c biogenesis protein ccsA OS=Jasminum nudiflorum GN=ccsA PE=3 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 2.289e-88
Identity = 160/260 (61.54%), Postives = 183/260 (70.38%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS---------LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H++  FK NQ  LS I  PSA FTQ FATSG LT++H+S ILVPALQ +WL+MHVSMM+LGY              VI  RK  + F        +NGSF F EI+YM+E+ NV  N+          S +NYYR Q IQQLD WSYR+ISLGF+FLT GILSGAVWANEAWGSYW+WDPKETWAFITW +F I+LH RTN KW+G NSAIVAS+GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLMFLSWSLSLIHRVPYFKKNQKFLSTIIGPSAIFTQAFATSGLLTEIHESTILVPALQSEWLIMHVSMMILGYAALLCGSLLSVALLVIAVRKNKKSFFTSNPLFKLNGSFFFGEIEYMDERINVLQNTPNTSFFSTFFSTKNYYRSQFIQQLDYWSYRVISLGFLFLTIGILSGAVWANEAWGSYWSWDPKETWAFITWIVFAIFLHIRTNVKWKGTNSAIVASIGFLIIWICYFGVNLLGIGLHSYGSF 325          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_DAUCA (Cytochrome c biogenesis protein ccsA OS=Daucus carota GN=ccsA PE=3 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 2.289e-88
Identity = 163/253 (64.43%), Postives = 184/253 (72.73%), Query Frame = 2
Query:    5 PLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFV-HVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            PLSDLYE            H +  FK N++HLS ITA S  FTQGFATSG LT++HQS ILVPALQ +WL+MHVSMM+LGY              V+TFRK   L  K+   +  +   F F EIQY+NE  N+F N+   S  NYYR Q+IQQLD WSYR+ISLGFIFLT GILSGAVWANEAWGSYWNWDPKETWAFITW +F +YLHTRTNT  +  NSAIVASMGFLIIWICYFGVNLLGIGLH+YGSF
Sbjct:   67 PLSDLYESLIFLSWSLSFIHIVPYFKKNKSHLSTITASSVIFTQGFATSGLLTEIHQSAILVPALQSEWLIMHVSMMILGYAALLCGSLLSVALLVLTFRKNRNLLCKKNPLLLKLTEEFSFGEIQYINEINNIFGNASFFSDNNYYRSQLIQQLDYWSYRVISLGFIFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWIVFAVYLHTRTNTNLQVENSAIVASMGFLIIWICYFGVNLLGIGLHTYGSF 319          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_SOYBN (Cytochrome c biogenesis protein ccsA OS=Glycine max GN=ccsA PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 8.700e-88
Identity = 162/255 (63.53%), Postives = 187/255 (73.33%), Query Frame = 2
Query:    5 PLSDLYEXXXXXXXXXXXXHKIFDFKNNQNH-LSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMN--EKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            P SDLYE            + +  FK ++N+ L+ I  PS  FTQGFATSG LTKMH+S ILVPALQ  WLMMHVSMM+LGY              VITF+++I++  K KNF  +N SF F+EI+YMN  +K NV   +  LS RNYYR Q +QQLDRW YR ISLGFIFLT GI+SGAVWANEAWGSYWNWDPKETWAFITWTIF IYLHTR N K E +NS+IVAS+GFLIIW+CY G+NLLGIGLHSYGSF
Sbjct:   68 PFSDLYESLIFLSWTFSIFYMVPYFKKSKNYYLNTIITPSVIFTQGFATSGLLTKMHESLILVPALQSHWLMMHVSMMILGYATLLCGSLLSVAILVITFQELIQIIGKSKNFYFLNESFSFAEIKYMNMTDKNNVLQKTSFLSYRNYYRSQFLQQLDRWGYRTISLGFIFLTIGIISGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHTRKNKKLEDLNSSIVASIGFLIIWVCYLGINLLGIGLHSYGSF 322          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_RANMC (Cytochrome c biogenesis protein ccsA OS=Ranunculus macranthus GN=ccsA PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.136e-87
Identity = 163/250 (65.20%), Postives = 181/250 (72.40%), Query Frame = 2
Query:    5 PLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            PLSDLYE            + I  F+N +++L+ +TAP   FTQGFATSG L ++HQS ILVPALQ QWLMMHVSMMVL Y              VI FRK    F K K +    G   FSEIQY+NEKKN+FL   S RNY+RYQ+IQQLD WS R+ISLGF+FLT GILSGAVWANE WGSYWNWDPKETWAFITWTIF IYLHTRTN   +  NSAIVAS+GF IIWICYFGVNLLGIGLHSYGSF
Sbjct:   67 PLSDLYESLMFLSWSFSIFYMIPYFRNKKSNLNVLTAPGTIFTQGFATSGVLREIHQSTILVPALQSQWLMMHVSMMVLSYAALLCGSLLSVALLVILFRKSSFTFSKYKGYYLPIGPLYFSEIQYVNEKKNIFL---SFRNYHRYQLIQQLDCWSSRVISLGFLFLTIGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHTRTNKSLQSSNSAIVASIGFFIIWICYFGVNLLGIGLHSYGSF 313          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_PHAAO (Cytochrome c biogenesis protein ccsA OS=Phalaenopsis aphrodite subsp. formosana GN=ccsA PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.136e-87
Identity = 160/255 (62.75%), Postives = 184/255 (72.16%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEG--VNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I   +N +N L+AITAPSA FTQGFATSG  T+MHQ  ILVPALQ QWLMMHVSMM+L Y              VITF+K    FLK KNF  +  SF F  ++Y+NEK ++   +  LS +N+Y+YQ+IQ LD WSYR+ISLGF FLT GILSGAVWANEAWGSYWNWDPKETWAFITWTIF IYLHTR N+K +    NSA VAS+GFL+IWICYFG+NLLGIG HSYGSF
Sbjct:   66 FPLSNLYESLIFLSWSLSIIHIILYIRNYKNDLNAITAPSAIFTQGFATSGLSTEMHQPAILVPALQSQWLMMHVSMMLLSYAALLCGSLLSVALIVITFQKKTDFFLKNKNFYSLRKSFFFGNMEYLNEKGSILKKTSLLSFKNFYKYQLIQHLDSWSYRVISLGFTFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHTRKNSKLQDQVTNSAFVASIGFLLIWICYFGINLLGIGFHSYGSF 320          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_LACSA (Cytochrome c biogenesis protein ccsA OS=Lactuca sativa GN=ccsA PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.136e-87
Identity = 159/253 (62.85%), Postives = 186/253 (73.52%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H +  FK  +N+L+ ITA S  FTQGFATSG LT++ +  ILVPALQ +WL+MHVSMM+L Y              VITFRK+   + K  NF+ +N SF F EIQY NE+ N+   +  LSA+NYY+ Q+IQQLD WSYR+ISLGFIFLT GILSGAVWANEAWGSYW+WDPKETWAFITW +F IYLH RTN  ++G NSAIVA++GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLIFLSWSFSLIHIVPYFKIRKNYLTEITASSTIFTQGFATSGLLTEIRKPTILVPALQSEWLIMHVSMMILSYAALLCGSLLSVALLVITFRKIFYSY-KSNNFLKLNESFSFGEIQYKNERNNILKKNYFLSAKNYYKAQLIQQLDYWSYRVISLGFIFLTIGILSGAVWANEAWGSYWSWDPKETWAFITWIVFAIYLHIRTNKNFQGANSAIVATLGFLIIWICYFGVNLLGIGLHSYGSF 317          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_CAPBU (Cytochrome c biogenesis protein ccsA OS=Capsella bursa-pastoris GN=ccsA PE=3 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 2.531e-87
Identity = 167/259 (64.48%), Postives = 186/259 (71.81%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKR---KNFVHVNGSFCFSEIQYMNEKKNVFL----NSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H +  F K  QNHL+AITAPSA F QGFATSG L KM QS ILVPALQ QWLMMHVSMM+LGY              VITFRKV   F K+   K F+ +N  F F  + Y+NE+ ++ L    N   +RNYYRYQ+IQQLD WS+RIISLGFIFLT GILSGAVWANE WGSYWNWDPKETWAFITWTIF IYLH +TN     +NSAIVAS+GFL+IWICYFGVNLLGIGLHSYGSF
Sbjct:   68 FPLSNLYESLIFLSWSFSIIHMVSYFNKKQQNHLNAITAPSAIFIQGFATSGLLNKMPQSAILVPALQSQWLMMHVSMMILGYGALLCGSLLSIALLVITFRKVGPTFWKKNIKKKFL-LNELFSFDVLYYINERNSILLQQNINFSFSRNYYRYQLIQQLDFWSFRIISLGFIFLTVGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVRDINSAIVASIGFLLIWICYFGVNLLGIGLHSYGSF 325          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_BARVE (Cytochrome c biogenesis protein ccsA OS=Barbarea verna GN=ccsA PE=3 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 3.306e-87
Identity = 166/259 (64.09%), Postives = 186/259 (71.81%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKR---KNFVHVNGSFCFSEIQYMNEKKNVFL----NSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H +  F K  +NHL+AITAPSA F QGFATSG L KM QS ILVPALQ QWLMMHVSMM+LGY              VITFRKV   F K+   K F+ +N  F F    Y+NE+ ++ L    N   +RNYYRYQ+I+QLD WS+RIISLGFIFLT GILSGAVWANE WGSYWNWDPKETWAFITWTIF IYLH +TN    G+NSAIVAS+GFL+IWICYFGVNLLGIGLHSYGSF
Sbjct:   68 FPLSNLYESLIFLSWAFSIIHMVSYFNKKKKNHLNAITAPSAIFIQGFATSGLLNKMPQSAILVPALQSQWLMMHVSMMILGYGALLCGSLLSIALLVITFRKVGPTFWKKNIKKKFL-LNELFSFDVFYYINERNSILLQQNINFSFSRNYYRYQLIEQLDYWSFRIISLGFIFLTVGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVRGINSAIVASIGFLLIWICYFGVNLLGIGLHSYGSF 325          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_LEPVR (Cytochrome c biogenesis protein ccsA OS=Lepidium virginicum GN=ccsA PE=3 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 4.318e-87
Identity = 164/258 (63.57%), Postives = 185/258 (71.71%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKR--KNFVHVNGSFCFSEIQYMNEKKNVFLNSLS----ARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H +  F K ++NHL+AITAPSA F QGFATSG L KM QS ILVPALQ QWLMMHVSMM+LGY              VITFRKV   F K+  K    +N  F F  + Y+NE+ ++ L   S    +RNYYRYQ+I+QLD WS+RIIS GFIFLT GILSGAVWANE WGSYWNWDPKETWAFITWTIF IYLH +TN    G+NSAIVAS+GFL+IWICYFGVNLLGIGLHSYGSF
Sbjct:   68 FPLSNLYESLIFLSWAFSIIHMVSYFNKKHKNHLNAITAPSAIFIQGFATSGLLNKMPQSAILVPALQSQWLMMHVSMMILGYGALLCGSLLSIALLVITFRKVRPTFWKKNIKTKFLLNELFSFDVLYYINERNSILLQQNSNFSFSRNYYRYQLIEQLDFWSFRIISFGFIFLTVGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVRGINSAIVASIGFLLIWICYFGVNLLGIGLHSYGSF 325          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_FAGEA (Cytochrome c biogenesis protein ccsA OS=Fagopyrum esculentum subsp. ancestrale GN=ccsA PE=3 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 7.365e-87
Identity = 166/253 (65.61%), Postives = 184/253 (72.73%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H I  FKN +  LSAITAP A FTQGFATSGF T+M QS ILVPALQ QWLMMHVSMM+L Y              VITF+  I LF KRK  + +N S    +IQY+NEK N+   +   S  N+YRYQ+I+QLDRWS R+ISLGF+FLT GILSGAVWANEAWGSYWNWDPKETWAFITWTIF IYLH +TN   +  NSAIVAS+GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLIFLSWSFYIIHMIPYFKNKK--LSAITAPGAIFTQGFATSGFFTQMKQSTILVPALQSQWLMMHVSMMILAYAALLCGSLLSVALLVITFQNNISLFGKRK--LLLNESLFIDKIQYVNEKNNILQGTYLFSLINFYRYQLIEQLDRWSSRVISLGFLFLTMGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHIKTNINLKSENSAIVASIGFLIIWICYFGVNLLGIGLHSYGSF 314          
The following BLAST results are available for this feature:
BLAST of CV712683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
CCSA_JASNU2.289e-8861.54Cytochrome c biogenesis protein ccsA OS=Jasminum n... [more]
CCSA_DAUCA2.289e-8864.43Cytochrome c biogenesis protein ccsA OS=Daucus car... [more]
CCSA_SOYBN8.700e-8863.53Cytochrome c biogenesis protein ccsA OS=Glycine ma... [more]
CCSA_RANMC1.136e-8765.20Cytochrome c biogenesis protein ccsA OS=Ranunculus... [more]
CCSA_PHAAO1.136e-8762.75Cytochrome c biogenesis protein ccsA OS=Phalaenops... [more]
CCSA_LACSA1.136e-8762.85Cytochrome c biogenesis protein ccsA OS=Lactuca sa... [more]
CCSA_CAPBU2.531e-8764.48Cytochrome c biogenesis protein ccsA OS=Capsella b... [more]
CCSA_BARVE3.306e-8764.09Cytochrome c biogenesis protein ccsA OS=Barbarea v... [more]
CCSA_LEPVR4.318e-8763.57Cytochrome c biogenesis protein ccsA OS=Lepidium v... [more]
CCSA_FAGEA7.365e-8765.61Cytochrome c biogenesis protein ccsA OS=Fagopyrum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001M02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712683 ID=CV712683; Name=CV712683; organism=Citrus sinensis; type=EST; length=831bp
TTTCCCATTAAGTGATTTATATGAATCATTAATCTTTCTTTCATGGAGTT
TATCTATTATTCATAAGATTTTTGATTTTAAAAATAATCAAAATCATTTA
AGCGCTATAACGGCACCAAGTGCTTTTTTTACCCAAGGCTTTGCGACTTC
GGGTTTTTTAACCAAAATGCATCAATCCAGAATATTAGTACCCGCTCTCC
AAGTCCAGTGGTTAATGATGCACGTAAGTATGATGGTATTGGGCTATGCA
GCTCTTTTATGTGGATCATTATTATCCACGGCTCTTCTAGTCATTACATT
TCGAAAAGTGATAAGGCTTTTTTTGAAAAGAAAAAATTTTGTACATGTAA
ATGGGTCATTTTGTTTCAGTGAAATCCAATACATGAACGAAAAAAAGAAT
GTTTTTCTAAATAGTCTTTCCGCTAGAAATTATTACAGGTATCAAGTGAT
TCAACAATTGGATCGTTGGAGTTATCGTATTATTAGTTTAGGATTTATCT
TTTTAACCACAGGTATTCTTTCGGGAGCAGTATGGGCTAATGAGGCGTGG
GGGTCTTATTGGAATTGGGATCCAAAAGAAACTTGGGCATTTATTACTTG
GACGATATTCGGGATTTATTTACATACTCGAACAAATACAAAATGGGAAG
GTGTAAATTCCGCAATTGTGGCTTCTATGGGCTTTCTTATAATTTGGATA
TGCTATTTCGGAGTCAATCTATTAGGAATAGGGTTACATAGTTATGGTTC
ATTTAATTAACACCTATTTGAATTGAAGAAAGGGTTTGATGAATACAAAC
ATAGGACAGCGCGGAGATCGAAACGAAACTT
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