CV712683

Overview
NameCV712683
Unique NameCV712683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_CRUWA (Cytochrome c biogenesis protein ccsA OS=Crucihimalaya wallichii GN=ccsA PE=3 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 9.619e-87
Identity = 165/259 (63.71%), Postives = 186/259 (71.81%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKR---KNFVHVNGSFCFSEIQYMNEKKNVFLNS----LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H +  F K  QNHL+AITAPSA F QGFATSG L KM QS ILVPALQ QWLMMHVS+M+LGY              VITFRKV   F K+   KNF+ +N  F F  + Y+NE+ ++ L        ++NYYRYQ+IQQLD WS+RIISLGFIFLT GILSGAVWANE WGSYWNWDPKETWAFITWTIF IYLH +TN    G+NSAIVAS+GFL+IWICYFGV LLGIGLHSYGSF
Sbjct:   68 FPLSNLYESLIFLSWAFSIIHMVSYFNKKQQNHLNAITAPSAIFIQGFATSGLLNKMPQSAILVPALQSQWLMMHVSLMILGYGALLCGSLLSIALLVITFRKVGPTFWKKNIKKNFL-LNELFSFDVLYYINERNSILLQQNITFSFSKNYYRYQLIQQLDYWSFRIISLGFIFLTVGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVRGINSAIVASIGFLLIWICYFGVILLGIGLHSYGSF 325          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_AETCO (Cytochrome c biogenesis protein ccsA OS=Aethionema cordifolium GN=ccsA PE=3 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.256e-86
Identity = 164/258 (63.57%), Postives = 184/258 (71.32%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKR--KNFVHVNGSFCFSEIQYMNEKKNVFL----NSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H +  F K  +N+L+AITAPSA F QGFATSG L KM QS ILVPALQ QWLMMHVSMMVLGY              VITFRKV   F K+  K    +   F F  + Y+NE+ ++FL    N   +RNYYRYQ+I+QLD WSYRIISLGF+FLT GILSGAVWANE WGSYWNWDPKETWAFITWTIF IYLH +T     G+NSAIVAS+GFL+IWICYFGVNLLGIGLHSYGSF
Sbjct:   68 FPLSNLYESLIFLSWAFSIIHMVSYFNKKKKNNLNAITAPSAIFIQGFATSGLLNKMPQSAILVPALQSQWLMMHVSMMVLGYGALLCGSLLSIALLVITFRKVGPFFYKKNKKKTKLLTDFFSFGVLYYINERNSIFLRQNINLSFSRNYYRYQLIEQLDYWSYRIISLGFLFLTMGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTKKNGRGINSAIVASIGFLVIWICYFGVNLLGIGLHSYGSF 325          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_DIOEL (Cytochrome c biogenesis protein ccsA OS=Dioscorea elephantipes GN=ccsA PE=3 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.641e-86
Identity = 159/253 (62.85%), Postives = 186/253 (73.52%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I   +N++N LS IT PS  FTQGF TS   T+M QS ILVPAL+ QWL+MHVSMM+L Y              VITFRK + +F KRKNF+    SF F+E +Y+N+K++VF N+  LS RNYY+YQ+ Q+LD W+YRIISLGFIFLT GILSGAVWANEAWGSYWNWDPKETWAFITWTIF IY H R N  ++G N A+VAS+GFLIIWICYFG+NLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLIFLSWSFSIIHMIPYLRNHKNDLSVITVPSVIFTQGFVTSCLSTEMRQSAILVPALKSQWLIMHVSMMLLSYATLLCGSLLSVALLVITFRKNMDIFCKRKNFLIK--SFFFAETEYLNKKRSVFKNTSFLSFRNYYKYQLTQRLDYWTYRIISLGFIFLTMGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYSHIRININFQGTNPALVASIGFLIIWICYFGINLLGIGLHSYGSF 316          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_ATRBE (Cytochrome c biogenesis protein ccsA OS=Atropa belladonna GN=ccsA PE=3 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 4.774e-86
Identity = 166/252 (65.87%), Postives = 179/252 (71.03%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLN-SLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H I  FKNN   LS IT PSA FTQGFATSG LT++HQS ILVPALQ +WL+MHVSMM+LGY              VITFRK  +LF K   FV  N SF   E        NV  N S SA+NYYR Q+IQQLD WSYR+ISLGF FLT GILSGAVWANEAWGSYWNWDPKETWAFITW +F IYLHTRTN    G NSAI+A++GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLIFLSWSFSLIHIIPYFKNNVLILSKITGPSAIFTQGFATSGILTEIHQSGILVPALQSEWLIMHVSMMILGYAALLCGSLLSVALLVITFRKNRKLFYKSNGFV--NESFLLGE--------NVLENTSFSAKNYYRSQLIQQLDYWSYRVISLGFTFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWIVFAIYLHTRTNINLRGANSAIIATIGFLIIWICYFGVNLLGIGLHSYGSF 307          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_ARATH (Cytochrome c biogenesis protein ccsA OS=Arabidopsis thaliana GN=ccsA PE=3 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 6.235e-86
Identity = 164/259 (63.32%), Postives = 184/259 (71.04%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKR---KNFVHVNGSFCFSEIQYMNEKKNVFL----NSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H +  F K  QN L+ ITAPS  F QGFATSG L KM QS ILVPALQ QWLMMHVSMM+LGY              VITFRKV   F K+   KNF+ +N  F F  + Y+NE+ ++ L    N   +RNYYRYQ+IQQLD WS+RIISLGFIFLT GILSGAVWANE WGSYWNWDPKETWAFITWTIF IYLH +TN    G+NSAIVA +GF++IWICYFGVNLLGIGLHSYGSF
Sbjct:   68 FPLSNLYESLIFLSWAFSIIHMVSYFNKKQQNKLNTITAPSVIFIQGFATSGLLNKMPQSAILVPALQSQWLMMHVSMMILGYGALLCGSLLSIALLVITFRKVGPTFWKKNIKKNFL-LNELFSFDVLYYINERNSILLQQNINFSFSRNYYRYQLIQQLDFWSFRIISLGFIFLTVGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVRGINSAIVALIGFILIWICYFGVNLLGIGLHSYGSF 325          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_GUIAB (Cytochrome c biogenesis protein ccsA OS=Guizotia abyssinica GN=ccsA PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 1.063e-85
Identity = 157/253 (62.06%), Postives = 180/253 (71.15%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H +  FK  +N L+ ITA S  FTQGFATSG L ++H+  ILVPALQ +WL+MHVSMM+L Y              VITFR +     K  NF+ +N SF F EIQY NE+ N+F  +   S +NYY+ Q IQQLD WSYR+ISLGFIFLT GILSGAVWANEAWGSYW+WDPKETWAFITW +F IYLHTRT    +G NSAIVA++GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESFIFLSWSFSLIHIVPYFKIRKNDLTTITASSTIFTQGFATSGLLNEIHKPTILVPALQSEWLIMHVSMMILSYAALLCGSLLSVALLVITFRNIF-YSSKSNNFLKLNESFSFGEIQYKNERNNIFQKTYFFSDKNYYKAQFIQQLDYWSYRVISLGFIFLTIGILSGAVWANEAWGSYWSWDPKETWAFITWIVFAIYLHTRTKKNLQGANSAIVATLGFLIIWICYFGVNLLGIGLHSYGSF 317          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_AETGR (Cytochrome c biogenesis protein ccsA OS=Aethionema grandiflora GN=ccsA PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.369e-85
Identity = 165/260 (63.46%), Postives = 183/260 (70.38%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLK----RKNFVHVNGSFCFSEIQYMNEKKNVFL----NSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I  F K  + +L+AITAPSA F QGFATSG L KM QS ILVPALQ QWLMMHVSMMVLGY              VITFRKV   F K    RK F+     F F  + Y+NE+ ++ L    N   +RNYYRYQ+I+QLD WSYRIISLGF+FLT GILSGAVWANE WGSYWNWDPKETWAFITWTIF IYLH +T     G+NSAIVAS+GFL+IWICYFGVNLLGIGLHSYGSF
Sbjct:   68 FPLSNLYESLIFLSWAFSIIHMISFFNKKRKKNLNAITAPSAIFIQGFATSGLLNKMPQSAILVPALQSQWLMMHVSMMVLGYGALLCGSLLSIALLVITFRKVGPFFYKKNINRKKFL--TEFFSFDVLYYINERNSILLKQNINLSFSRNYYRYQLIEQLDYWSYRIISLGFLFLTIGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTKQNGRGINSAIVASIGFLVIWICYFGVNLLGIGLHSYGSF 325          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_HELAN (Cytochrome c biogenesis protein ccsA OS=Helianthus annuus GN=ccsA PE=3 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 5.278e-85
Identity = 156/253 (61.66%), Postives = 179/253 (70.75%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H +  FK  +N L+ ITA    FTQGFATSG L ++H+  ILVPALQ +WL+MHVSMM+L Y              VITFR +     K  N + +N SF F EIQY NE+ N+F  +   S +NYY+ Q IQQLD WSYR+ISLGFIFLT GILSGAVWANEAWGSYW+WDPKETWAFITW +F IYLHTRTN   +G NSAIVA++GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLIFLSWSFSLIHIVPYFKIRKNDLTTITASITIFTQGFATSGLLNEIHKPTILVPALQSEWLIMHVSMMILSYAALLCGSLLSVALLVITFRNIF-YSSKSNNLLKLNESFSFGEIQYKNERNNIFQKTSFFSDKNYYKAQFIQQLDYWSYRVISLGFIFLTIGILSGAVWANEAWGSYWSWDPKETWAFITWIVFAIYLHTRTNKNLQGANSAIVATLGFLIIWICYFGVNLLGIGLHSYGSF 317          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_TOBAC (Cytochrome c biogenesis protein ccsA OS=Nicotiana tabacum GN=ccsA PE=3 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 9.003e-85
Identity = 165/253 (65.22%), Postives = 178/253 (70.36%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H I  FK N   LS IT PSA FTQGFATSG LT++HQS ILVPALQ +WL+MHVSMM+LGY              VITFRK  +LF K   F+  N SF   E        NV  N+   SA+NYYR Q+IQQLD WSYR+ISLGF FLT GILSGAVWANEAWGSYWNWDPKETWAFITW +F IYLHTRTN    G NSAIVAS+GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLIFLSWSFSLIHIIPYFKKNVLILSKITGPSAIFTQGFATSGILTEIHQSVILVPALQSEWLIMHVSMMILGYAALLCGSLLSVALLVITFRKNRQLFYKSNGFL--NESFFLGE--------NVLQNTSFFSAKNYYRSQLIQQLDYWSYRVISLGFTFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWIVFAIYLHTRTNRNLRGANSAIVASIGFLIIWICYFGVNLLGIGLHSYGSF 308          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_NICSY (Cytochrome c biogenesis protein ccsA OS=Nicotiana sylvestris GN=ccsA PE=3 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 9.003e-85
Identity = 165/253 (65.22%), Postives = 178/253 (70.36%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H I  FK N   LS IT PSA FTQGFATSG LT++HQS ILVPALQ +WL+MHVSMM+LGY              VITFRK  +LF K   F+  N SF   E        NV  N+   SA+NYYR Q+IQQLD WSYR+ISLGF FLT GILSGAVWANEAWGSYWNWDPKETWAFITW +F IYLHTRTN    G NSAIVAS+GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLIFLSWSFSLIHIIPYFKKNVLILSKITGPSAIFTQGFATSGILTEIHQSVILVPALQSEWLIMHVSMMILGYAALLCGSLLSVALLVITFRKNRQLFYKSNGFL--NESFFLGE--------NVLQNTSFFSAKNYYRSQLIQQLDYWSYRVISLGFTFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWIVFAIYLHTRTNRNLRGANSAIVASIGFLIIWICYFGVNLLGIGLHSYGSF 308          
The following BLAST results are available for this feature:
BLAST of CV712683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
CCSA_CRUWA9.619e-8763.71Cytochrome c biogenesis protein ccsA OS=Crucihimal... [more]
CCSA_AETCO1.256e-8663.57Cytochrome c biogenesis protein ccsA OS=Aethionema... [more]
CCSA_DIOEL1.641e-8662.85Cytochrome c biogenesis protein ccsA OS=Dioscorea ... [more]
CCSA_ATRBE4.774e-8665.87Cytochrome c biogenesis protein ccsA OS=Atropa bel... [more]
CCSA_ARATH6.235e-8663.32Cytochrome c biogenesis protein ccsA OS=Arabidopsi... [more]
CCSA_GUIAB1.063e-8562.06Cytochrome c biogenesis protein ccsA OS=Guizotia a... [more]
CCSA_AETGR2.369e-8563.46Cytochrome c biogenesis protein ccsA OS=Aethionema... [more]
CCSA_HELAN5.278e-8561.66Cytochrome c biogenesis protein ccsA OS=Helianthus... [more]
CCSA_TOBAC9.003e-8565.22Cytochrome c biogenesis protein ccsA OS=Nicotiana ... [more]
CCSA_NICSY9.003e-8565.22Cytochrome c biogenesis protein ccsA OS=Nicotiana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001M02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712683 ID=CV712683; Name=CV712683; organism=Citrus sinensis; type=EST; length=831bp
TTTCCCATTAAGTGATTTATATGAATCATTAATCTTTCTTTCATGGAGTT
TATCTATTATTCATAAGATTTTTGATTTTAAAAATAATCAAAATCATTTA
AGCGCTATAACGGCACCAAGTGCTTTTTTTACCCAAGGCTTTGCGACTTC
GGGTTTTTTAACCAAAATGCATCAATCCAGAATATTAGTACCCGCTCTCC
AAGTCCAGTGGTTAATGATGCACGTAAGTATGATGGTATTGGGCTATGCA
GCTCTTTTATGTGGATCATTATTATCCACGGCTCTTCTAGTCATTACATT
TCGAAAAGTGATAAGGCTTTTTTTGAAAAGAAAAAATTTTGTACATGTAA
ATGGGTCATTTTGTTTCAGTGAAATCCAATACATGAACGAAAAAAAGAAT
GTTTTTCTAAATAGTCTTTCCGCTAGAAATTATTACAGGTATCAAGTGAT
TCAACAATTGGATCGTTGGAGTTATCGTATTATTAGTTTAGGATTTATCT
TTTTAACCACAGGTATTCTTTCGGGAGCAGTATGGGCTAATGAGGCGTGG
GGGTCTTATTGGAATTGGGATCCAAAAGAAACTTGGGCATTTATTACTTG
GACGATATTCGGGATTTATTTACATACTCGAACAAATACAAAATGGGAAG
GTGTAAATTCCGCAATTGTGGCTTCTATGGGCTTTCTTATAATTTGGATA
TGCTATTTCGGAGTCAATCTATTAGGAATAGGGTTACATAGTTATGGTTC
ATTTAATTAACACCTATTTGAATTGAAGAAAGGGTTTGATGAATACAAAC
ATAGGACAGCGCGGAGATCGAAACGAAACTT
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