CV712683

Overview
NameCV712683
Unique NameCV712683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_NASOF (Cytochrome c biogenesis protein ccsA OS=Nasturtium officinale GN=ccsA PE=3 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 9.003e-85
Identity = 163/259 (62.93%), Postives = 183/259 (70.66%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKR---KNFVHVNGSFCFSEIQYMNEKKNVFL----NSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H +  F K  +NHL+AITAPSA F QGFATSG L KM QS ILVPALQ QWLMMHVSMM+LGY              VITFRKV   FL++   K F+ +   F F     +NEK  + L    N   +RNYYRYQ+I+QLD WS+RIISLGFIFLT GILSGAVWANE WGSYWNWDPKETWAFITWTIF IYLH +TN     +NSAIVAS+GF++IWICYFGVNLLGIGLHSYGSF
Sbjct:   68 FPLSNLYESLIFLSWAFSIIHMVSYFNKKKKNHLNAITAPSAIFIQGFATSGLLNKMPQSAILVPALQSQWLMMHVSMMILGYGALLCGSLLSMALLVITFRKVGPTFLQKNIKKKFL-LTELFSFDVFYSINEKNAILLQQNINFSFSRNYYRYQLIEQLDYWSFRIISLGFIFLTVGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVRSINSAIVASIGFILIWICYFGVNLLGIGLHSYGSF 325          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_ARAHI (Cytochrome c biogenesis protein ccsA OS=Arabis hirsuta GN=ccsA PE=3 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 2.006e-84
Identity = 161/260 (61.92%), Postives = 183/260 (70.38%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLF----LKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLS----ARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I  F K  +NHL+AITAPSA F QGFATSG L K+ +S ILVPALQ QWLMMHVSMM+LGY              VITFRK    F    +K+ N +     F F  + Y+NE+ ++ L   S    +RNYYRYQ+I+QLD WS+RIISLGFIFLT GILSGAVWANE WGSYWNWDPKETWAFITWTIF I+LH +TN    G+NSAIVAS GFL+IWICYFGVNLLGIGLHSYGSF
Sbjct:   68 FPLSNLYESLIFLSWAFSIIHMISYFNKKQKNHLNAITAPSAIFIQGFATSGLLNKIPESAILVPALQSQWLMMHVSMMILGYGALLCGSLLSIALLVITFRKTGPTFWNKNIKKNNLL--TEFFYFDVLYYINERNSILLQQNSNFSFSRNYYRYQLIEQLDYWSFRIISLGFIFLTVGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIFLHIKTNRNVRGINSAIVASTGFLLIWICYFGVNLLGIGLHSYGSF 325          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_AMBTC (Cytochrome c biogenesis protein ccsA OS=Amborella trichopoda GN=ccsA PE=3 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 2.006e-84
Identity = 157/251 (62.55%), Postives = 180/251 (71.71%), Query Frame = 2
Query:    5 PLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLN-SLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            PLS+LYE            H I   +N++N LS+ITAPSA  TQGF TSG LT+MHQS ILVPALQ  WL+MHVSMM+L Y              VITFRK + +      F+ +   F F EIQY+NEK+++  N S S RNY++YQ+ QQLD WSYR+I +GF  LT GILSGAVWANEAWGSYWNWDPKETWAFITWTI  IYLHTRTN   +  NSAIVAS+GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 PLSNLYESLIFLSWGFSLIHMISKIQNHKNFLSSITAPSAILTQGFVTSGLLTEMHQSAILVPALQSHWLIMHVSMMLLSYAALLCGSLLSIALLVITFRKKLDII-----FLLIR-LFSFGEIQYLNEKRSILQNTSFSFRNYHKYQLTQQLDHWSYRVIGIGFTLLTLGILSGAVWANEAWGSYWNWDPKETWAFITWTISAIYLHTRTNKNLQSANSAIVASIGFLIIWICYFGVNLLGIGLHSYGSF 310          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_SACOF (Cytochrome c biogenesis protein ccsA OS=Saccharum officinarum GN=ccsA PE=3 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.619e-84
Identity = 153/253 (60.47%), Postives = 178/253 (70.36%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSA--RNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I   +N++N LS IT PS   TQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y              +I FR     F  +KN +    +F FSEI+Y+  K++   N+      NYY+YQ+ ++LD WSYR+ISLGF  LT GIL GAVWANEAWGSYWNWDPKETWAFITWTIF IYLH+RTN  W+G NSA+VAS+GFLIIWICYFG+NLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLIFLSWTLYILHTIPKIQNSKNDLSTITTPSTILTQGFATSGLLTEMHQSTILVPALQSQWLMMHVSMMLLSYATLLCGSLLSAALLIIRFRNSFDFFSLKKNVLRK--TFFFSEIEYLYAKRSALKNTSFPVFPNYYKYQLTERLDSWSYRVISLGFTLLTVGILCGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHSRTNPNWKGTNSALVASIGFLIIWICYFGINLLGIGLHSYGSF 316          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_SACHY (Cytochrome c biogenesis protein ccsA OS=Saccharum hybrid GN=ccsA PE=3 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.619e-84
Identity = 153/253 (60.47%), Postives = 178/253 (70.36%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSA--RNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I   +N++N LS IT PS   TQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y              +I FR     F  +KN +    +F FSEI+Y+  K++   N+      NYY+YQ+ ++LD WSYR+ISLGF  LT GIL GAVWANEAWGSYWNWDPKETWAFITWTIF IYLH+RTN  W+G NSA+VAS+GFLIIWICYFG+NLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLIFLSWTLYILHTIPKIQNSKNDLSTITTPSTILTQGFATSGLLTEMHQSTILVPALQSQWLMMHVSMMLLSYATLLCGSLLSAALLIIRFRNSFDFFSLKKNVLRK--TFFFSEIEYLYAKRSALKNTSFPVFPNYYKYQLTERLDSWSYRVISLGFTLLTVGILCGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHSRTNPNWKGTNSALVASIGFLIIWICYFGINLLGIGLHSYGSF 316          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_HORVU (Cytochrome c biogenesis protein ccsA OS=Hordeum vulgare GN=ccsA PE=3 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.619e-84
Identity = 154/253 (60.87%), Postives = 179/253 (70.75%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSL--SARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I   +N++N LS IT PS   TQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y              +I FR     F K+K  V +N +F FSEI +   K++   ++   S  NYY+YQ+ ++LD WSYRIISLGF  LT GIL GAVWANEAWGSYWNWDPKETWAFITWTIF IYLH+RTN  W+G NSA++AS+GFLIIWICYFG+NLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLIFLSWALYILHTIPKIQNSKNDLSTITTPSTILTQGFATSGLLTEMHQSTILVPALQSQWLMMHVSMMLLSYATLLCGSLLSAAILIIRFRNNFHFFSKKKKNV-LNKTFFFSEIAFFYAKRSALKSAPVPSFPNYYKYQLTERLDSWSYRIISLGFTLLTIGILCGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHSRTNPNWKGTNSALIASIGFLIIWICYFGINLLGIGLHSYGSF 317          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_NYMAL (Cytochrome c biogenesis protein ccsA OS=Nymphaea alba GN=ccsA PE=3 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 3.421e-84
Identity = 159/250 (63.60%), Postives = 175/250 (70.00%), Query Frame = 2
Query:    5 PLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            PLSDLYE            H +  F+N +N  S ITAPSA  TQGFATSG LTKMHQS ILVPALQ +WLMMHVSMM+L Y              VITFR+ I +F K  + +    SF F E QY+N          S RNY+RYQ+ Q+LD WSYR+I LGF  LT GILSGAVWANEAWGSYWNWDPKETWAFITWT+F IYLHTRTN   +G NSAIVASMGFLIIWICYFGVNLLG GLHSYGSF
Sbjct:   66 PLSDLYESLMFLSWSFSLIHIVPYFRNYKNFFSKITAPSAILTQGFATSGLLTKMHQSAILVPALQSRWLMMHVSMMLLSYAALLCGSLLSITLLVITFRRKIDIFGKTNHLLI--SSFSFDETQYVN---------FSFRNYHRYQLTQRLDYWSYRVIGLGFTLLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTVFAIYLHTRTNKSLQGANSAIVASMGFLIIWICYFGVNLLGRGLHSYGSF 304          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_NICTO (Cytochrome c biogenesis protein ccsA OS=Nicotiana tomentosiformis GN=ccsA PE=3 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 3.421e-84
Identity = 163/251 (64.94%), Postives = 177/251 (70.52%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H I  FK N   LS I  PSA FTQGFATSG LT++HQS ILVPALQ +WL+MHVSMM+LGY              VITFRK  +LF K   F+  N SF   E    N  +N +    SA+NYYR Q+IQQLD WSYR+ISLGF FLT GILSGAVWANEAWGSYWNWDPKETWAFITW +F IYLHTRTN    G NSAIVAS+GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLIFLSWSFSLIHIIPYFKKNVLILSKIIGPSAIFTQGFATSGILTEIHQSVILVPALQSEWLIMHVSMMILGYAALLCGSLLSVALLVITFRKNRQLFYKSNGFL--NESFFLGE----NVLQNTYF--FSAKNYYRSQLIQQLDYWSYRVISLGFTFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWIVFAIYLHTRTNRNLRGANSAIVASIGFLIIWICYFGVNLLGIGLHSYGSF 308          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_ORYSJ (Cytochrome c biogenesis protein ccsA OS=Oryza sativa subsp. japonica GN=ccsA PE=3 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 5.835e-84
Identity = 153/253 (60.47%), Postives = 180/253 (71.15%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSAR--NYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I   +N++N LS IT PS   TQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y              +I FRK +  F K+K  V ++ +F F+EI+Y   K++   ++      NYY+YQ+I++LD WSYR+ISLGF  LT GIL GAVWANEAWGSYWNWDPKETWAFITWTIF IYLH+RTN  W+G  SA VAS+GFLIIWICYFG+NLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLIFLSWALYILHMIPKIQNSKNDLSTITTPSTILTQGFATSGLLTEMHQSTILVPALQSQWLMMHVSMMLLSYATLLCGSLLSAALLMIRFRKNLDFFSKKKKNV-LSKTFFFNEIEYFYAKRSALKSTFFPLFPNYYKYQLIERLDSWSYRVISLGFTLLTIGILCGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHSRTNPNWKGTKSAFVASIGFLIIWICYFGINLLGIGLHSYGSF 317          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_ORYSA (Cytochrome c biogenesis protein ccsA OS=Oryza sativa GN=ccsA PE=3 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 5.835e-84
Identity = 153/253 (60.47%), Postives = 180/253 (71.15%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSAR--NYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I   +N++N LS IT PS   TQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y              +I FRK +  F K+K  V ++ +F F+EI+Y   K++   ++      NYY+YQ+I++LD WSYR+ISLGF  LT GIL GAVWANEAWGSYWNWDPKETWAFITWTIF IYLH+RTN  W+G  SA VAS+GFLIIWICYFG+NLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLIFLSWALYILHMIPKIQNSKNDLSTITTPSTILTQGFATSGLLTEMHQSTILVPALQSQWLMMHVSMMLLSYATLLCGSLLSAALLMIRFRKNLDFFSKKKKNV-LSKTFFFNEIEYFYAKRSALKSTFFPLFPNYYKYQLIERLDSWSYRVISLGFTLLTIGILCGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHSRTNPNWKGTKSAFVASIGFLIIWICYFGINLLGIGLHSYGSF 317          
The following BLAST results are available for this feature:
BLAST of CV712683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
CCSA_NASOF9.003e-8562.93Cytochrome c biogenesis protein ccsA OS=Nasturtium... [more]
CCSA_ARAHI2.006e-8461.92Cytochrome c biogenesis protein ccsA OS=Arabis hir... [more]
CCSA_AMBTC2.006e-8462.55Cytochrome c biogenesis protein ccsA OS=Amborella ... [more]
CCSA_SACOF2.619e-8460.47Cytochrome c biogenesis protein ccsA OS=Saccharum ... [more]
CCSA_SACHY2.619e-8460.47Cytochrome c biogenesis protein ccsA OS=Saccharum ... [more]
CCSA_HORVU2.619e-8460.87Cytochrome c biogenesis protein ccsA OS=Hordeum vu... [more]
CCSA_NYMAL3.421e-8463.60Cytochrome c biogenesis protein ccsA OS=Nymphaea a... [more]
CCSA_NICTO3.421e-8464.94Cytochrome c biogenesis protein ccsA OS=Nicotiana ... [more]
CCSA_ORYSJ5.835e-8460.47Cytochrome c biogenesis protein ccsA OS=Oryza sati... [more]
CCSA_ORYSA5.835e-8460.47Cytochrome c biogenesis protein ccsA OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001M02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712683 ID=CV712683; Name=CV712683; organism=Citrus sinensis; type=EST; length=831bp
TTTCCCATTAAGTGATTTATATGAATCATTAATCTTTCTTTCATGGAGTT
TATCTATTATTCATAAGATTTTTGATTTTAAAAATAATCAAAATCATTTA
AGCGCTATAACGGCACCAAGTGCTTTTTTTACCCAAGGCTTTGCGACTTC
GGGTTTTTTAACCAAAATGCATCAATCCAGAATATTAGTACCCGCTCTCC
AAGTCCAGTGGTTAATGATGCACGTAAGTATGATGGTATTGGGCTATGCA
GCTCTTTTATGTGGATCATTATTATCCACGGCTCTTCTAGTCATTACATT
TCGAAAAGTGATAAGGCTTTTTTTGAAAAGAAAAAATTTTGTACATGTAA
ATGGGTCATTTTGTTTCAGTGAAATCCAATACATGAACGAAAAAAAGAAT
GTTTTTCTAAATAGTCTTTCCGCTAGAAATTATTACAGGTATCAAGTGAT
TCAACAATTGGATCGTTGGAGTTATCGTATTATTAGTTTAGGATTTATCT
TTTTAACCACAGGTATTCTTTCGGGAGCAGTATGGGCTAATGAGGCGTGG
GGGTCTTATTGGAATTGGGATCCAAAAGAAACTTGGGCATTTATTACTTG
GACGATATTCGGGATTTATTTACATACTCGAACAAATACAAAATGGGAAG
GTGTAAATTCCGCAATTGTGGCTTCTATGGGCTTTCTTATAATTTGGATA
TGCTATTTCGGAGTCAATCTATTAGGAATAGGGTTACATAGTTATGGTTC
ATTTAATTAACACCTATTTGAATTGAAGAAAGGGTTTGATGAATACAAAC
ATAGGACAGCGCGGAGATCGAAACGAAACTT
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