CV712683

Overview
NameCV712683
Unique NameCV712683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_WHEAT (Cytochrome c biogenesis protein ccsA OS=Triticum aestivum GN=ccsA PE=3 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.954e-84
Identity = 151/253 (59.68%), Postives = 179/253 (70.75%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSL--SARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I   +N++N LS IT PS   TQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y              +I FR     F K+K  V +N +F FS+I+Y   K++    +   S  NYY+YQ+ ++LD WSYR+ISLGF  LT GIL GAVWANEAWG+YWNWDPKETWAFITWTIF IYLH+RT+  W+G NSA++AS+GFLIIWICYFG+NLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLISLSWALYILHTIPKIQNSKNDLSTITTPSTILTQGFATSGLLTEMHQSTILVPALQSQWLMMHVSMMLLSYATLLGGPPLSAAILIIRFRNNFHFFSKKKKNV-LNKTFLFSDIKYFYAKRSALKRTSVPSFPNYYKYQLTERLDSWSYRVISLGFTLLTGGILGGAVWANEAWGAYWNWDPKETWAFITWTIFAIYLHSRTHPNWKGTNSALIASIGFLIIWICYFGINLLGIGLHSYGSF 317          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_SORBI (Cytochrome c biogenesis protein ccsA OS=Sorghum bicolor GN=ccsA PE=3 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.954e-84
Identity = 153/253 (60.47%), Postives = 177/253 (69.96%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSA--RNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I   +N++N LS IT PS   TQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y              +I FR     F  +KN      +F FSEI+Y+  K++   N+      NYY+YQ+ ++LD WSYR+ISLGF  LT GIL GAVWANEAWGSYWNWDPKETWAFITWTIF IYLH+RTN  W+G NSA+VAS+GFLIIWICYFG+NLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLIFLSWTLYILHTIPKIQNSKNDLSTITTPSTILTQGFATSGLLTEMHQSTILVPALQSQWLMMHVSMMLLSYATLLCGSLLSAALLIIRFRNSFDFFSLKKNVFLK--TFFFSEIEYLYAKRSALKNTSFPVFPNYYKYQLTERLDSWSYRVISLGFTLLTVGILCGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHSRTNPNWKGTNSALVASIGFLIIWICYFGINLLGIGLHSYGSF 316          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_ORYSI (Cytochrome c biogenesis protein ccsA OS=Oryza sativa subsp. indica GN=ccsA PE=3 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.954e-84
Identity = 153/253 (60.47%), Postives = 179/253 (70.75%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSAR--NYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I   +N++N LS IT PS   TQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y              +I FRK +  F K+K  V +  +F F+EI+Y   K++   ++      NYY+YQ+I++LD WSYR+ISLGF  LT GIL GAVWANEAWGSYWNWDPKETWAFITWTIF IYLH+RTN  W+G  SA VAS+GFLIIWICYFG+NLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLIFLSWALYILHMIPKIQNSKNDLSTITTPSTILTQGFATSGLLTEMHQSTILVPALQSQWLMMHVSMMLLSYATLLCGSLLSAALLMIRFRKNLDFFSKKKKNVLLK-TFFFNEIEYFYAKRSALKSTFFPLFPNYYKYQLIERLDSWSYRVISLGFTLLTIGILCGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHSRTNPNWKGTKSAFVASIGFLIIWICYFGINLLGIGLHSYGSF 317          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_ORYNI (Cytochrome c biogenesis protein ccsA OS=Oryza nivara GN=ccsA PE=3 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.954e-84
Identity = 153/253 (60.47%), Postives = 179/253 (70.75%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSAR--NYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I   +N++N LS IT PS   TQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y              +I FRK +  F K+K  V +  +F F+EI+Y   K++   ++      NYY+YQ+I++LD WSYR+ISLGF  LT GIL GAVWANEAWGSYWNWDPKETWAFITWTIF IYLH+RTN  W+G  SA VAS+GFLIIWICYFG+NLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLIFLSWALYILHMIPKIQNSKNDLSTITTPSTILTQGFATSGLLTEMHQSTILVPALQSQWLMMHVSMMLLSYATLLCGSLLSAALLMIRFRKNLDFFSKKKKNVLLK-TFFFNEIEYFYAKRSALKSTFFPLFPNYYKYQLIERLDSWSYRVISLGFTLLTIGILCGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHSRTNPNWKGTKSAFVASIGFLIIWICYFGINLLGIGLHSYGSF 317          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_NUPAD (Cytochrome c biogenesis protein ccsA OS=Nuphar advena GN=ccsA PE=3 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.954e-84
Identity = 157/250 (62.80%), Postives = 176/250 (70.40%), Query Frame = 2
Query:    5 PLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            PLSDLYE            H +  F+N +N+ S ITAPSA  TQGFATSG LTKMHQS ILVPALQ +WLMMHVSMM+L Y              VITFR+ I +  K  + +    SF F EIQY+N         +S RNY+RYQ+ Q+LD WSYR+I LGF  LT GILSGAVWANEAWGSYWNWDPKETWAFITWT+F IY HTRTN   +G NSAIVAS+GFLIIWICYFGVNLLG GLHSYGSF
Sbjct:   66 PLSDLYESLMFLSWSFSFIHIVPYFRNYKNYFSTITAPSAILTQGFATSGLLTKMHQSAILVPALQSRWLMMHVSMMLLSYAALLCGSLLSITLLVITFRRNIDIIGKTNHLLI--SSFSFDEIQYLN---------VSFRNYHRYQLTQRLDHWSYRVIGLGFTLLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTVFAIYSHTRTNKSLQGANSAIVASIGFLIIWICYFGVNLLGRGLHSYGSF 304          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_COFAR (Cytochrome c biogenesis protein ccsA OS=Coffea arabica GN=ccsA PE=3 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.954e-84
Identity = 161/253 (63.64%), Postives = 183/253 (72.33%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H +  FK N+ +LS IT  S  FTQGF TSG LT++ QS ILVPALQ +WL+MHV+MM+LGY              VITFRK  ++ L R N + +N SF F EI+YMNE+ N+  N+   SA+NYYR Q+IQQLD WS R ISLGFIFLT GILSGAVWANEAWGSYWNWDPKETWAFITW IF IYLHTRT    +  NSAIVAS+GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   67 FPLSNLYESLIFLSWSFSLIHIVPYFKKNKKYLSTITGSSVVFTQGFTTSGLLTEIDQSSILVPALQSEWLIMHVTMMILGYASLLCGSLLSIALLVITFRKNKKI-LYRNNLL-LNESFFFVEIEYMNERSNLLQNTSFFSAKNYYRSQLIQQLDYWSSRGISLGFIFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWIIFAIYLHTRTTRNPKCANSAIVASIGFLIIWICYFGVNLLGIGLHSYGSF 317          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_BRADI (Cytochrome c biogenesis protein ccsA OS=Brachypodium distachyon GN=ccsA PE=3 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.954e-84
Identity = 152/253 (60.08%), Postives = 179/253 (70.75%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSL--SARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I   +N++N LS IT PS   TQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y              +I FR     F K+   V +  +F FS+++Y   K++ F ++   S  NYY+YQ+ ++LD WSYR+ISLGF  LT GIL GAVWANEAWGSYWNWDPKETWAFITWTIF IYLH+RTN  W+G NSA+VAS+GFLIIWICYFG+NLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLIFLSWALYILHTIPKVQNSKNDLSTITTPSTILTQGFATSGLLTEMHQSTILVPALQSQWLMMHVSMMLLSYATLLCGSLLSAAILIIRFRNNFNFFSKKNKNV-LKKTFLFSKMEYFYAKRSYFKSASVPSFPNYYKYQLTERLDSWSYRVISLGFTLLTIGILCGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHSRTNQNWKGTNSALVASIGFLIIWICYFGINLLGIGLHSYGSF 317          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_MAIZE (Cytochrome c biogenesis protein ccsA OS=Zea mays GN=ccsA PE=3 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.698e-83
Identity = 153/253 (60.47%), Postives = 177/253 (69.96%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSA--RNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I   +N++N LS IT PS   TQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y              +I FRK    F  +KN      +F FSEI+Y+  K++   N+      NYY+YQ+ ++LD WSYR+ISLGF  LT GIL GAVWANEAWGSYWNWDPKETWAFITWTIF IYLH+R N  W+G NSA+VAS+GFLIIWICYFG+NLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLIFLSWTLYILHTIPKIQNSKNDLSTITTPSTILTQGFATSGLLTEMHQSTILVPALQSQWLMMHVSMMLLSYATLLCGSLLSAALLIIRFRKNFDFFSLKKNVFLK--TFFFSEIEYLYAKRSALKNTSFPVFPNYYKYQLTERLDSWSYRVISLGFTLLTVGILCGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHSRKNPNWKGTNSALVASIGFLIIWICYFGINLLGIGLHSYGSF 316          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_SOLTU (Cytochrome c biogenesis protein ccsA OS=Solanum tuberosum GN=ccsA PE=3 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.896e-83
Identity = 163/253 (64.43%), Postives = 176/253 (69.57%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H I  FK N   LS IT PSA  TQGFATSG LT++HQS ILVPALQ +WL+MHVSMM+LGY              VITFRK  +LF K   F+  N SF   E        NV  N+    A+NYYR Q+IQQLD WSYR+ISLGF FLT GILSGAVWANEAWGSYWNWDPKETWAFITW +F IYLHTRTN    G NSAIVAS+GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLIFLSWSFSLIHIIPYFKKNVLILSKITGPSAILTQGFATSGILTEIHQSGILVPALQSEWLIMHVSMMILGYAALLCGSLLSVALLVITFRKNRKLFYKSNGFL--NESFFLGE--------NVVENTSFFCAKNYYRSQLIQQLDYWSYRVISLGFTFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWIVFAIYLHTRTNRNLRGPNSAIVASIGFLIIWICYFGVNLLGIGLHSYGSF 308          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_SOLBU (Cytochrome c biogenesis protein ccsA OS=Solanum bulbocastanum GN=ccsA PE=3 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.896e-83
Identity = 163/253 (64.43%), Postives = 176/253 (69.57%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H I  FK N   LS IT PSA  TQGFATSG LT++HQS ILVPALQ +WL+MHVSMM+LGY              VITFRK  +LF K   F+  N SF   E        NV  N+    A+NYYR Q+IQQLD WSYR+ISLGF FLT GILSGAVWANEAWGSYWNWDPKETWAFITW +F IYLHTRTN    G NSAIVAS+GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLIFLSWSFSLIHIIPYFKKNVLILSKITGPSAILTQGFATSGILTEIHQSGILVPALQSEWLIMHVSMMILGYAALLCGSLLSVALLVITFRKNRKLFYKSNGFL--NESFFLGE--------NVVENTSFFCAKNYYRSQLIQQLDYWSYRVISLGFTFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWIVFAIYLHTRTNRNLRGPNSAIVASIGFLIIWICYFGVNLLGIGLHSYGSF 308          
The following BLAST results are available for this feature:
BLAST of CV712683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
CCSA_WHEAT9.954e-8459.68Cytochrome c biogenesis protein ccsA OS=Triticum a... [more]
CCSA_SORBI9.954e-8460.47Cytochrome c biogenesis protein ccsA OS=Sorghum bi... [more]
CCSA_ORYSI9.954e-8460.47Cytochrome c biogenesis protein ccsA OS=Oryza sati... [more]
CCSA_ORYNI9.954e-8460.47Cytochrome c biogenesis protein ccsA OS=Oryza niva... [more]
CCSA_NUPAD9.954e-8462.80Cytochrome c biogenesis protein ccsA OS=Nuphar adv... [more]
CCSA_COFAR9.954e-8463.64Cytochrome c biogenesis protein ccsA OS=Coffea ara... [more]
CCSA_BRADI9.954e-8460.08Cytochrome c biogenesis protein ccsA OS=Brachypodi... [more]
CCSA_MAIZE1.698e-8360.47Cytochrome c biogenesis protein ccsA OS=Zea mays G... [more]
CCSA_SOLTU2.896e-8364.43Cytochrome c biogenesis protein ccsA OS=Solanum tu... [more]
CCSA_SOLBU2.896e-8364.43Cytochrome c biogenesis protein ccsA OS=Solanum bu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001M02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712683 ID=CV712683; Name=CV712683; organism=Citrus sinensis; type=EST; length=831bp
TTTCCCATTAAGTGATTTATATGAATCATTAATCTTTCTTTCATGGAGTT
TATCTATTATTCATAAGATTTTTGATTTTAAAAATAATCAAAATCATTTA
AGCGCTATAACGGCACCAAGTGCTTTTTTTACCCAAGGCTTTGCGACTTC
GGGTTTTTTAACCAAAATGCATCAATCCAGAATATTAGTACCCGCTCTCC
AAGTCCAGTGGTTAATGATGCACGTAAGTATGATGGTATTGGGCTATGCA
GCTCTTTTATGTGGATCATTATTATCCACGGCTCTTCTAGTCATTACATT
TCGAAAAGTGATAAGGCTTTTTTTGAAAAGAAAAAATTTTGTACATGTAA
ATGGGTCATTTTGTTTCAGTGAAATCCAATACATGAACGAAAAAAAGAAT
GTTTTTCTAAATAGTCTTTCCGCTAGAAATTATTACAGGTATCAAGTGAT
TCAACAATTGGATCGTTGGAGTTATCGTATTATTAGTTTAGGATTTATCT
TTTTAACCACAGGTATTCTTTCGGGAGCAGTATGGGCTAATGAGGCGTGG
GGGTCTTATTGGAATTGGGATCCAAAAGAAACTTGGGCATTTATTACTTG
GACGATATTCGGGATTTATTTACATACTCGAACAAATACAAAATGGGAAG
GTGTAAATTCCGCAATTGTGGCTTCTATGGGCTTTCTTATAATTTGGATA
TGCTATTTCGGAGTCAATCTATTAGGAATAGGGTTACATAGTTATGGTTC
ATTTAATTAACACCTATTTGAATTGAAGAAAGGGTTTGATGAATACAAAC
ATAGGACAGCGCGGAGATCGAAACGAAACTT
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