CV712683

Overview
NameCV712683
Unique NameCV712683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_ILLOL (Cytochrome c biogenesis protein ccsA OS=Illicium oligandrum GN=ccsA PE=3 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.896e-83
Identity = 157/253 (62.06%), Postives = 179/253 (70.75%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPL+DLYE              +  FKN++NH S ITAPSA  TQ FATSG  T++HQS ILVPALQ  WLMMHVSMM+L Y              VITFRK I +     + +     F F EI+Y+NEK+++  N+  L  RNY+RYQ+ Q+LD WSYR+I LGF F T GILSGAVWANEAWGSYWNWDPKETWAFITWTI  IY HTRTN   +G+NSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLNDLYESLMFLSWSFSLILMVPYFKNHKNHFSTITAPSAICTQSFATSGLSTEIHQSEILVPALQSHWLMMHVSMMLLSYAALLCGSLLSIALLVITFRKNIDMIGFTNHLLI--WPFSFGEIKYLNEKRSLLKNTSFLLFRNYHRYQLTQRLDHWSYRVIGLGFTFSTIGILSGAVWANEAWGSYWNWDPKETWAFITWTISAIYSHTRTNKSLQGMNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 316          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_PHAVU (Cytochrome c biogenesis protein ccsA OS=Phaseolus vulgaris GN=ccsA PE=3 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 4.940e-83
Identity = 156/258 (60.47%), Postives = 179/258 (69.38%), Query Frame = 2
Query:    5 PLSDLYEXXXXXXXXXXXXHKIFDFKNNQNH-LSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMN--EKKNV-----FLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            P S+LYE            + +   K  +N+  + I  PS  FTQGFATSG LT+MHQS ILVPALQ  WLMMHVSMM+LGY              VITF+++I +  K K F   N +  F+EI+YMN  +KKN+     F++  S  NYYRYQ IQQLDRW YR ISLGFIFLT G +SGAVWANEAWGSYWNWDPKETWAFITW IF IYLH R N K E +NS+IVASMGFLIIWICY G+NLLGIGLHSYGSF
Sbjct:   68 PFSNLYESLIFLSWTFSIFYMVLCLKKKKNYYFNTIITPSILFTQGFATSGLLTEMHQSLILVPALQSHWLMMHVSMMILGYTTLLCGSLLSVAILVITFQELIHMIGKSKTFFFFNETLSFAEIKYMNMNDKKNLLQKTPFMSDSSYINYYRYQFIQQLDRWGYRTISLGFIFLTVGNISGAVWANEAWGSYWNWDPKETWAFITWIIFAIYLHIRKNKKLEYLNSSIVASMGFLIIWICYLGINLLGIGLHSYGSF 325          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_LOBMA (Cytochrome c biogenesis protein ccsA OS=Lobularia maritima GN=ccsA PE=3 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.877e-82
Identity = 162/259 (62.55%), Postives = 185/259 (71.43%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKR---KNFVHVNGSFCFSEIQYMNEKKNVFL----NSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H +  F K  + +L+AITAPSA F QGFA SG L  M QS ILVPALQ QWLMMHVSMM+LGY              VITFRKV   FLK+   K F+ +N  F F  + Y+NEK ++ L    N   +RNYYRYQ+I+QLD  S+RIISLGFIFLT GILSGAVWANE WGSYWNWDPKETWAFITWTIF IYLH +TN   +G+NSAIVA++GFL+IWICYFGVNLLGIGLHSYGSF
Sbjct:   68 FPLSNLYESLIFLAWAFSIIHMVSYFNKKKKKNLNAITAPSAIFIQGFAASGLLN-MPQSAILVPALQSQWLMMHVSMMILGYGALLCGSLLSIALLVITFRKVGPTFLKKNLKKKFL-LNELFSFDVLYYINEKNSILLQQNINFSFSRNYYRYQLIEQLDFLSFRIISLGFIFLTIGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVKGINSAIVAAIGFLLIWICYFGVNLLGIGLHSYGSF 324          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_SOLLC (Cytochrome c biogenesis protein ccsA OS=Solanum lycopersicum GN=ccsA PE=3 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.452e-82
Identity = 162/253 (64.03%), Postives = 175/253 (69.17%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H I  FK N   LS IT PSA  TQGFATSG LT++HQS ILVPALQ +WL+MHVSMM+LGY              VITFRK  +LF K   F+  N SF   E        NV  N+     +NYYR Q+IQQLD WSYR+ISLGF FLT GILSGAVWANEAWGSYWNWDPKETWAFITW +F IYLHTRTN    G NSAIVAS+GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSDLYESLIFLSWSFSLIHIIPYFKKNVLILSKITGPSAILTQGFATSGILTEIHQSGILVPALQSEWLIMHVSMMILGYAALLCGSLLSVALLVITFRKNRKLFSKSNVFL--NESFFLGE--------NVVENTSFFCTKNYYRSQLIQQLDYWSYRVISLGFTFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWIVFAIYLHTRTNRNLRGPNSAIVASIGFLIIWICYFGVNLLGIGLHSYGSF 308          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_PIPCE (Cytochrome c biogenesis protein ccsA OS=Piper cenocladum GN=ccsA PE=3 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 4.182e-82
Identity = 154/252 (61.11%), Postives = 175/252 (69.44%), Query Frame = 2
Query:    5 PLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            PLS+LYE            H      N+QN LS ITA  A + Q FATSG L +MHQS ILVPALQ QWLMMHVSMM+L Y              VITFRK I +  K   F  +  SF  SE++ + +KK+   N   LS +NY++YQ  QQLD WSYRII+LGF  LT GILSGAVWANEAWGSYWNWDPKETWAFITWTIF  YLHTRTN +  G++SAIVAS+GFLIIWICYFGVNLLGIGLHSYG+F
Sbjct:   67 PLSNLYESLMFLSWGFSTIHIFSKIWNHQNDLSTITATGAIYCQAFATSGILNEMHQSAILVPALQSQWLMMHVSMMLLSYGALLCGSLLSVSLLVITFRKNIEILEKMNQFSFLIESFLLSEVRPLKKKKSFLQNISFLSFKNYHKYQFTQQLDHWSYRIINLGFTLLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFATYLHTRTNQRMPGMHSAIVASIGFLIIWICYFGVNLLGIGLHSYGAF 318          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_AGRST (Cytochrome c biogenesis protein ccsA OS=Agrostis stolonifera GN=ccsA PE=3 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 7.133e-82
Identity = 151/251 (60.16%), Postives = 174/251 (69.32%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I   +N++N LS IT PS   TQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y              +I FR     F K+K  V ++ +F FS+  Y         +  S  NYY+YQ+ ++LD WSYR+ISLGF  LT GIL GAVWANEAWGSYWNWDPKETWAFITWTIF IYLH+RTN  W+G NSA+VAS+GFLIIWICYFG+NLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLIFLSWALYILHTIPKIQNSKNDLSTITTPSTILTQGFATSGLLTEMHQSTILVPALQSQWLMMHVSMMLLSYATLLCGSLLSAAILIIRFRNNFHFFSKKKKNV-LHKTFLFSDF-YAKRSALKSTSVPSFPNYYKYQLTERLDSWSYRVISLGFTLLTIGILCGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHSRTNQNWKGTNSALVASIGFLIIWICYFGINLLGIGLHSYGSF 314          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_LOLPR (Cytochrome c biogenesis protein ccsA OS=Lolium perenne GN=ccsA PE=3 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 3.540e-81
Identity = 150/251 (59.76%), Postives = 174/251 (69.32%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I   +N++N LS IT PS   TQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+L Y              +I FR     F K+K  V +  +F FS+  Y+        +  S  NYY+YQ+ ++LD WSYR+ISLGF  LT GIL GAVWAN+AWGSYWNWDPKETWAFITWTIF IYLH+RTN  W+G NSA+VAS+GFLIIWICYFG+NLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLIFLSWALYILHTIPKIQNSKNDLSTITTPSTILTQGFATSGLLTEMHQSTILVPALQSQWLMMHVSMMLLSYATLLCGSLLSAAILIIRFRNNFFFFSKKKKNVLLK-TFFFSDF-YVKRSSLKSTSVPSFPNYYKYQLTERLDSWSYRVISLGFTLLTIGILCGAVWANDAWGSYWNWDPKETWAFITWTIFAIYLHSRTNLNWKGTNSALVASIGFLIIWICYFGINLLGIGLHSYGSF 314          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_PELHO (Cytochrome c biogenesis protein ccsA OS=Pelargonium hortorum GN=ccsA PE=3 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 4.624e-81
Identity = 151/253 (59.68%), Postives = 178/253 (70.36%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            + +   KN +NHL  IT+PS  F QGFATSG LT++H+ +ILVPALQ QWLMMHVSMM+L Y              VITFRK   +  KR  F++      FS IQY+NE++ + L +    + NYYR  ++QQ D WSYRIIS+GF+FLT GILSGAVWANEAWGSYW+WDPKETWAFITWTIF IYLH R     EGV SAIVAS+GFLIIWICYFG+N+LGIGLHSYGSF
Sbjct:   66 FPLSNLYESLIFLSWNFSIINMLPYLKNLKNHLREITSPSTLFIQGFATSGLLTQIHEQKILVPALQSQWLMMHVSMMILSYASLLCGSLLSIALLVITFRKSRSVVGKRNKFLNR----IFSNIQYINEREKILLKTSFTYSINYYRSHLLQQFDFWSYRIISIGFLFLTIGILSGAVWANEAWGSYWSWDPKETWAFITWTIFAIYLHIREKKNAEGVKSAIVASIGFLIIWICYFGINILGIGLHSYGSF 314          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_DRANE (Cytochrome c biogenesis protein ccsA OS=Draba nemorosa GN=ccsA PE=3 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.345e-80
Identity = 156/260 (60.00%), Postives = 183/260 (70.38%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLF----LKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLS----ARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H +  F K  +N+L+AITAPSA F QGFATSG L KM QS ILVPALQ QWLMMHVSMM+LGY              VITFRKV+  F    +K KN +  N  F F ++ Y+ E+ ++ L   S    ++NYYR Q+I+QLD WS+RIISLGFIFLT GILS +VWANE WGSYWNWDPKETWAFITWTIF IYLH +TN    G++S IV ++GFL+IWICYFGVNLLGIGLHSYGSF
Sbjct:   68 FPLSNLYESLIFLSWAFSIIHMVSYFNKKQKNYLNAITAPSAIFIQGFATSGLLNKMPQSAILVPALQSQWLMMHVSMMILGYGALLCGSLLSIALLVITFRKVVPPFWNENIKTKNLL--NELFYF-DVYYIKERNSILLQQNSNFSFSKNYYRSQLIEQLDFWSFRIISLGFIFLTVGILSESVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVRGIHSPIVDAIGFLLIWICYFGVNLLGIGLHSYGSF 324          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_LEMMI (Cytochrome c biogenesis protein ccsA OS=Lemna minor GN=ccsA PE=3 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.914e-80
Identity = 156/259 (60.23%), Postives = 184/259 (71.04%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXH---KIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMN--EKKNVFLN---SLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H   KI++ KN +N+LSAIT PSA FTQ FATSG  T+MH+S ILVPAL+  WLMMHVSMM+L Y              VITFRK  +L ++ +N +   GS  F ++ Y+N  E  NV  N   S S +NYY+YQ++++LD WS R+IS+GF FLT GILSGAVWANEAWGSYWNWDPKETWAFITWTI+ IY HTRT    +G NSAIVAS+GF IIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLMFLSWSFAIIHMIPKIWNHKN-KNYLSAITIPSAIFTQAFATSGLSTEMHESGILVPALRSHWLMMHVSMMLLSYAALLVGSLFSIALLVITFRKNGKLVVENQNLLI--GSSFFDQMDYLNFNENINVLENPSFSSSFKNYYKYQLVERLDYWSSRVISIGFSFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIYAIYSHTRTTKNGQGANSAIVASIGFFIIWICYFGVNLLGIGLHSYGSF 321          
The following BLAST results are available for this feature:
BLAST of CV712683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
CCSA_ILLOL2.896e-8362.06Cytochrome c biogenesis protein ccsA OS=Illicium o... [more]
CCSA_PHAVU4.940e-8360.47Cytochrome c biogenesis protein ccsA OS=Phaseolus ... [more]
CCSA_LOBMA1.877e-8262.55Cytochrome c biogenesis protein ccsA OS=Lobularia ... [more]
CCSA_SOLLC2.452e-8264.03Cytochrome c biogenesis protein ccsA OS=Solanum ly... [more]
CCSA_PIPCE4.182e-8261.11Cytochrome c biogenesis protein ccsA OS=Piper ceno... [more]
CCSA_AGRST7.133e-8260.16Cytochrome c biogenesis protein ccsA OS=Agrostis s... [more]
CCSA_LOLPR3.540e-8159.76Cytochrome c biogenesis protein ccsA OS=Lolium per... [more]
CCSA_PELHO4.624e-8159.68Cytochrome c biogenesis protein ccsA OS=Pelargoniu... [more]
CCSA_DRANE1.345e-8060.00Cytochrome c biogenesis protein ccsA OS=Draba nemo... [more]
CCSA_LEMMI3.914e-8060.23Cytochrome c biogenesis protein ccsA OS=Lemna mino... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001M02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712683 ID=CV712683; Name=CV712683; organism=Citrus sinensis; type=EST; length=831bp
TTTCCCATTAAGTGATTTATATGAATCATTAATCTTTCTTTCATGGAGTT
TATCTATTATTCATAAGATTTTTGATTTTAAAAATAATCAAAATCATTTA
AGCGCTATAACGGCACCAAGTGCTTTTTTTACCCAAGGCTTTGCGACTTC
GGGTTTTTTAACCAAAATGCATCAATCCAGAATATTAGTACCCGCTCTCC
AAGTCCAGTGGTTAATGATGCACGTAAGTATGATGGTATTGGGCTATGCA
GCTCTTTTATGTGGATCATTATTATCCACGGCTCTTCTAGTCATTACATT
TCGAAAAGTGATAAGGCTTTTTTTGAAAAGAAAAAATTTTGTACATGTAA
ATGGGTCATTTTGTTTCAGTGAAATCCAATACATGAACGAAAAAAAGAAT
GTTTTTCTAAATAGTCTTTCCGCTAGAAATTATTACAGGTATCAAGTGAT
TCAACAATTGGATCGTTGGAGTTATCGTATTATTAGTTTAGGATTTATCT
TTTTAACCACAGGTATTCTTTCGGGAGCAGTATGGGCTAATGAGGCGTGG
GGGTCTTATTGGAATTGGGATCCAAAAGAAACTTGGGCATTTATTACTTG
GACGATATTCGGGATTTATTTACATACTCGAACAAATACAAAATGGGAAG
GTGTAAATTCCGCAATTGTGGCTTCTATGGGCTTTCTTATAATTTGGATA
TGCTATTTCGGAGTCAATCTATTAGGAATAGGGTTACATAGTTATGGTTC
ATTTAATTAACACCTATTTGAATTGAAGAAAGGGTTTGATGAATACAAAC
ATAGGACAGCGCGGAGATCGAAACGAAACTT
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