CV712683

Overview
NameCV712683
Unique NameCV712683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_IPOPU (Cytochrome c biogenesis protein ccsA OS=Ipomoea purpurea GN=ccsA PE=3 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 6.677e-80
Identity = 157/255 (61.57%), Postives = 179/255 (70.20%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSA----IVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDLYE            H I  F  N   LS I +PSA FTQGFATSG LT++HQS ILVPAL+ +WL+MHVSMM+LGY              VITFRK  +LF    +F+    SF F E  +  +K + F    SA+NYYR Q IQQLD WSYR+ISLGF+FLT GILSGAVWANEAWGSYW+WDPKETWAFITW +F I+LHTRTN   + VNSA    IVAS+GFLIIWICYFGVNL+GIGLHSYGSF
Sbjct:   66 FPLSDLYESFIFLSWSFALIHIIPYFTKNTKFLSKIISPSAIFTQGFATSGLLTEIHQSSILVPALKSEWLIMHVSMMILGYAALLCGSLLSVALLVITFRKNGKLFSGGNDFL--TESFLFGENLF--QKTSFF----SAKNYYRTQFIQQLDFWSYRVISLGFLFLTIGILSGAVWANEAWGSYWSWDPKETWAFITWIVFAIFLHTRTNLNLQSVNSAIVASIVASIGFLIIWICYFGVNLVGIGLHSYGSF 312          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_TRACE (Cytochrome c biogenesis protein ccsA OS=Trachelium caeruleum GN=ccsA PE=3 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 2.537e-79
Identity = 152/253 (60.08%), Postives = 178/253 (70.36%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H +   K N+N LS ITA S  FTQGFATSG LT++++S ILVPALQ +WL+MHVSMM+L Y              VIT RK      K    + +  S  F +IQY N++ ++F  +   S +NYY+ Q++QQLD WSYR+ISLGFIFLT GILSGAVWANEAWGSYW+WDPKETWAFITW IF IYLHTRTN  + G NSAIVA +GFLIIWICYFGVNLLGIGLHSYGSF
Sbjct:   66 FPLSNLYESLIFLSWSFSLIHIVAYLKKNKN-LSRITASSTIFTQGFATSGLLTEINKSGILVPALQSEWLIMHVSMMILSYAALLCGSLLSAALLVITCRK------KFNELLRLIESLSFDKIQYRNQRIHLFGKTYFFSVKNYYKIQLVQQLDYWSYRVISLGFIFLTMGILSGAVWANEAWGSYWSWDPKETWAFITWIIFAIYLHTRTNKNFWGANSAIVAVIGFLIIWICYFGVNLLGIGLHSYGSF 311          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_CUSEX (Cytochrome c biogenesis protein ccsA OS=Cuscuta exaltata GN=ccsA PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 6.909e-77
Identity = 147/251 (58.57%), Postives = 173/251 (68.92%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDL E            H I  F  N   LS IT+ S  FTQGFATSG LT++ +S ILVPALQ +WL+MHVS+M+LGY              VITFRK  + F K K+F+       F+EI Y    K +F+   +  NYY+ Q+IQ+LD WSY++I LGFIFLT GILSGAVWANEAWGSYW+WDPKETWAFITW +F IYLHTR     +G NSAIVAS+GFLIIWICYFGVNL+G+GLHSYGSF
Sbjct:   66 FPLSDLSESLIFLSWSFALIHSIAYFTKNTKLLSTITSQSTVFTQGFATSGILTEIQKSSILVPALQSEWLIMHVSLMILGYAALLCGSLLSVALMVITFRKDGKFFSKSKDFL-------FTEIFY----KKIFV--FNYNNYYKTQLIQELDFWSYQVIGLGFIFLTIGILSGAVWANEAWGSYWSWDPKETWAFITWIVFAIYLHTRKKRSLQGTNSAIVASIGFLIIWICYFGVNLVGLGLHSYGSF 303          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_CUSRE (Cytochrome c biogenesis protein ccsA OS=Cuscuta reflexa GN=ccsA PE=3 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.179e-76
Identity = 146/251 (58.17%), Postives = 170/251 (67.73%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLSDL E            H I  F  N   LS IT+ S  FTQGFATSG LTK+ +S IL+PAL+ +WL+MHVS+M+LGY              VIT R   + F K  NF+       F EI Y N  KN F     A NYY+ Q+I++LD WSY++ISLGFIFLT GILSGAVWANEAWGSYW+WDPKETWAFITW +F IYLHTR N   +  NSAIVAS+GF+IIWICYFGVNL+G+GLHSYGSF
Sbjct:   66 FPLSDLSESLIFLSWSFALIHSIGYFTKNLKFLSTITSQSTLFTQGFATSGILTKIQKSSILIPALKSEWLIMHVSLMILGYAALLCGSLLSVALMVITVRNDGKFFFKSNNFL-------FREISYQN--KNFFY----AINYYKTQLIKELDFWSYQVISLGFIFLTIGILSGAVWANEAWGSYWSWDPKETWAFITWIVFAIYLHTRININLQSTNSAIVASLGFIIIWICYFGVNLVGLGLHSYGSF 303          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_MARPO (Cytochrome c biogenesis protein ccsA OS=Marchantia polymorpha GN=ccsA PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.067e-65
Identity = 128/252 (50.79%), Postives = 152/252 (60.32%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS---LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYG 748
            FPLS+LYE            H I + K+    L  ITAPSA  T GFAT     +M +S  LVPALQ  WLMMHV+MM+L Y              +IT  K   L +    F     SF F  +    E + +   +    S  N+ ++Q+I++LD WSYR+ISLGF  LT GILSGAVWANEAWGSYWNWDPKETWA ITW IF IYLHTR    W+G   AI+AS+GF I+WICY GVNLLG GLHSYG
Sbjct:   66 FPLSNLYESSMFLSWSFTLIHLILENKSKNTWLGIITAPSAMLTHGFATLSLPKEMQESVFLVPALQSHWLMMHVTMMMLSYSTLLCGSLLAITILIITLTKQKNLPILTSYFNFPFNSFIFKNLLQPMENEILSYKTQKVFSFINFRKWQLIKELDNWSYRVISLGFPLLTIGILSGAVWANEAWGSYWNWDPKETWALITWLIFAIYLHTRMIKGWQGKKPAIIASLGFFIVWICYLGVNLLGKGLHSYG 317          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_CYCTA (Cytochrome c biogenesis protein ccsA OS=Cycas taitungensis GN=ccsA PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.761e-64
Identity = 130/257 (50.58%), Postives = 160/257 (62.26%), Query Frame = 2
Query:    5 PLSDLYEXXXXXXXXXXXXHKIFDFKNNQNH-LSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRK---VIRLFLKRKN-----FVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYG 748
            PLS+LYE            H I + ++ ++  L AITAPS   T GFATSG   +M QS +LVPALQ  WLMMHVSM++L Y              +ITFR+   ++ L   R N     F   N  +     Q  ++ +N F   LS  N+ + ++ QQLD WSYR+I LGF+ LT GILSGAVWANEAWGS W+WDPKETWA ITW IF IYLHTR N  W+  N AI+AS+G  I+WICY GV+LLGIGLHSYG
Sbjct:   66 PLSNLYESFMFLSWSSSVIHIILEVRSQKDRGLGAITAPSTMLTHGFATSGLPKEMQQSAMLVPALQSHWLMMHVSMILLSYATLLCGSLSSIAFLIITFRRNRRILSLLSARDNSFIWPFPSRNNLYLHE--QEKSDLQNTFY--LSFTNHRKCKLTQQLDYWSYRVIGLGFLLLTIGILSGAVWANEAWGSRWSWDPKETWALITWIIFAIYLHTRVNKGWQDENPAIIASLGSFIVWICYLGVDLLGIGLHSYG 318          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_PINTH (Cytochrome c biogenesis protein ccsA OS=Pinus thunbergii GN=ccsA PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.675e-60
Identity = 129/264 (48.86%), Postives = 153/264 (57.95%), Query Frame = 2
Query:    5 PLSDLYEXXXXXXXXXXXXHKIFDFKNNQNH-LSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITF---RKVI---------RLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS---LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYG 748
            PLS+LYE            H + + ++  +  L AITAPSA  T GFAT G   +M +S +LVPALQ  W MMHVSM++  Y              VI     R+VI         R  L  +NF             Y +EK+   L      S+ NY + Q+I+QLD WSYR I LGF   T G LSGA+WANEAWGSYW+WDPKETWA ITWTIF IYLHTR N  W+G   AIVAS+GF I+WI Y GVNLLGIGLHSYG
Sbjct:   66 PLSNLYESFMFLSWSSSVFHILLEVRSRDDRWLGAITAPSAMLTHGFATLGLPEEMQRSGMLVPALQSHWSMMHVSMILFSYATLLCGSLASIALLVIMSGVNRQVIFGAMDNLFSRAILPNENF-------------YSHEKQKSDLQYTVYFSSTNYRKCQLIKQLDHWSYRAIGLGFSLSTIGTLSGAIWANEAWGSYWSWDPKETWALITWTIFAIYLHTRMNKGWQGEEPAIVASLGFFIVWIRYLGVNLLGIGLHSYG 316          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_WELMI (Cytochrome c biogenesis protein ccsA OS=Welwitschia mirabilis GN=ccsA PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.942e-57
Identity = 115/251 (45.82%), Postives = 140/251 (55.78%), Query Frame = 2
Query:    5 PLSDLYEXXXXXXXXXXXXHKIFDFKN-NQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            PLS+LYE                D KN N   +  ITAPSA FT  FAT     +M QS+ L+PALQ  WL+MHV+++ LGY               I   K +  F              +   +Y  E K    +  S +N+ + Q+I Q+D  SY  I +GF FLT GILSGAVWANEAWGSYW+WDPKE WA ITW IF  Y+H R N  WEG   A+VAS+G   +WICYFGVN+LGIG HSYG F
Sbjct:   66 PLSNLYESLMFFSWNFCLIPFFIDIKNPNTQWIGVITAPSALFTHAFATLILPIEMQQSQRLIPALQSHWLIMHVTIIFLGYVTLLCGSLSSIALLAINLEKKLSFFT------------LYFRKEYSYENKRKAFHPYSFKNFRKSQMIHQIDNLSYYTIVIGFTFLTIGILSGAVWANEAWGSYWSWDPKEIWALITWLIFANYIHIRLNKGWEGNKPALVASLGLFFVWICYFGVNILGIGFHSYGWF 304          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_HETA4 (Cytochrome c biogenesis protein ccsA OS=Heterosigma akashiwo (strain CCMP452) GN=ccsA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.723e-56
Identity = 111/254 (43.70%), Postives = 143/254 (56.30%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVI-TFRKVIRLFLKRKNFVHVNGSFCFSEIQY-MNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSFN 757
            FPLS+LYE            ++  +FK     + A+  P     QGFA+    T M +S  LVPALQ  WLM+HVSMM+L Y              V+   +K++     ++ FV  N  F  +   + +N+  N+   + + R     ++I  LD WSYR I +GF FLT GI+SGAVWANEAWGSYW+WDPKETWA ITW IF  YLH R    W G  +A + S GF I+W+CY GVN LG GLHSYG  N
Sbjct:   73 FPLSNLYESLMFLSCLLLFIYQFIEFKTRSRVIGALVLPLIVLVQGFASLSLPTAMQKSSPLVPALQSNWLMLHVSMMMLSYATLLLGSLFSILYLVLYKDKKILTKKSIKEQFVEENFVFQLTTSAFSLNQTSNIITEAKTDRQ----RLILSLDNWSYRTIGIGFPFLTMGIISGAVWANEAWGSYWSWDPKETWALITWLIFASYLHARLTKGWRGKRAAFLGSFGFFIVWVCYLGVNFLGKGLHSYGFLN 322          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_HETA2 (Cytochrome c biogenesis protein ccsA OS=Heterosigma akashiwo (strain NIES-293) GN=ccsA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.723e-56
Identity = 111/254 (43.70%), Postives = 143/254 (56.30%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVI-TFRKVIRLFLKRKNFVHVNGSFCFSEIQY-MNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSFN 757
            FPLS+LYE            ++  +FK     + A+  P     QGFA+    T M +S  LVPALQ  WLM+HVSMM+L Y              V+   +K++     ++ FV  N  F  +   + +N+  N+   + + R     ++I  LD WSYR I +GF FLT GI+SGAVWANEAWGSYW+WDPKETWA ITW IF  YLH R    W G  +A + S GF I+W+CY GVN LG GLHSYG  N
Sbjct:   73 FPLSNLYESLMFLSCLLLFIYQFIEFKTRSRVIGALVLPLIVLVQGFASLSLPTAMQKSSPLVPALQSNWLMLHVSMMMLSYATLLLGSLFSILYLVLYKDKKILTKKSIKEQFVEENFVFQLTTSAFSLNQTSNIITEAKTDRQ----RLILSLDNWSYRTIGIGFPFLTMGIISGAVWANEAWGSYWSWDPKETWALITWLIFASYLHARLTKGWRGKRAAFLGSFGFFIVWVCYLGVNFLGKGLHSYGFLN 322          
The following BLAST results are available for this feature:
BLAST of CV712683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
CCSA_IPOPU6.677e-8061.57Cytochrome c biogenesis protein ccsA OS=Ipomoea pu... [more]
CCSA_TRACE2.537e-7960.08Cytochrome c biogenesis protein ccsA OS=Trachelium... [more]
CCSA_CUSEX6.909e-7758.57Cytochrome c biogenesis protein ccsA OS=Cuscuta ex... [more]
CCSA_CUSRE1.179e-7658.17Cytochrome c biogenesis protein ccsA OS=Cuscuta re... [more]
CCSA_MARPO6.067e-6550.79Cytochrome c biogenesis protein ccsA OS=Marchantia... [more]
CCSA_CYCTA8.761e-6450.58Cytochrome c biogenesis protein ccsA OS=Cycas tait... [more]
CCSA_PINTH7.675e-6048.86Cytochrome c biogenesis protein ccsA OS=Pinus thun... [more]
CCSA_WELMI7.942e-5745.82Cytochrome c biogenesis protein ccsA OS=Welwitschi... [more]
CCSA_HETA46.723e-5643.70Cytochrome c biogenesis protein ccsA OS=Heterosigm... [more]
CCSA_HETA26.723e-5643.70Cytochrome c biogenesis protein ccsA OS=Heterosigm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001M02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712683 ID=CV712683; Name=CV712683; organism=Citrus sinensis; type=EST; length=831bp
TTTCCCATTAAGTGATTTATATGAATCATTAATCTTTCTTTCATGGAGTT
TATCTATTATTCATAAGATTTTTGATTTTAAAAATAATCAAAATCATTTA
AGCGCTATAACGGCACCAAGTGCTTTTTTTACCCAAGGCTTTGCGACTTC
GGGTTTTTTAACCAAAATGCATCAATCCAGAATATTAGTACCCGCTCTCC
AAGTCCAGTGGTTAATGATGCACGTAAGTATGATGGTATTGGGCTATGCA
GCTCTTTTATGTGGATCATTATTATCCACGGCTCTTCTAGTCATTACATT
TCGAAAAGTGATAAGGCTTTTTTTGAAAAGAAAAAATTTTGTACATGTAA
ATGGGTCATTTTGTTTCAGTGAAATCCAATACATGAACGAAAAAAAGAAT
GTTTTTCTAAATAGTCTTTCCGCTAGAAATTATTACAGGTATCAAGTGAT
TCAACAATTGGATCGTTGGAGTTATCGTATTATTAGTTTAGGATTTATCT
TTTTAACCACAGGTATTCTTTCGGGAGCAGTATGGGCTAATGAGGCGTGG
GGGTCTTATTGGAATTGGGATCCAAAAGAAACTTGGGCATTTATTACTTG
GACGATATTCGGGATTTATTTACATACTCGAACAAATACAAAATGGGAAG
GTGTAAATTCCGCAATTGTGGCTTCTATGGGCTTTCTTATAATTTGGATA
TGCTATTTCGGAGTCAATCTATTAGGAATAGGGTTACATAGTTATGGTTC
ATTTAATTAACACCTATTTGAATTGAAGAAAGGGTTTGATGAATACAAAC
ATAGGACAGCGCGGAGATCGAAACGAAACTT
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