CV712683

Overview
NameCV712683
Unique NameCV712683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_PORYE (Cytochrome c biogenesis protein ccsA OS=Porphyra yezoensis GN=ccsA PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.293e-54
Identity = 111/257 (43.19%), Postives = 142/257 (55.25%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRL--------FLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYG 748
            FPLS+LYE            H   + K     + A   P A F   FA+     +M ++  LVPAL+  WLMMHVS+M+L Y              +IT  K I L          K KN    +     S++  + E+ N+ +NS       R  +++ +D  SYR I LGF  LT GI++GAVWANEAWGSYW+WDPKETWA ITW IF  YLH+R    W+G   AI+AS+GFL++WICY GVN LG GLHSYG
Sbjct:   66 FPLSNLYESLLFLAWGLTFVHLFIENKTKSRLIGATAIPVAMFVTAFASLALPLEMQKASPLVPALKSNWLMMHVSIMMLSYAILILGSLLSILFLIITKGKDINLKGSSIGTGSYKVKNTDAKSTLIFSSQVGIVQEQSNMLINST------RMNLLESIDNLSYRTIGLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHSRITKSWQGKKPAILASLGFLVVWICYLGVNFLGKGLHSYG 316          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_ODOSI (Cytochrome c biogenesis protein ccsA OS=Odontella sinensis GN=ccsA PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.073e-53
Identity = 110/249 (44.18%), Postives = 139/249 (55.82%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYG 748
            FPLS+LYE            +   +FK     + AI  P A    GFA       M +S  LVPALQ  WLM+HVSMM+L Y              VI+  + I L +  ++ + +        + Y   K  +F  S       + +++Q LD WSYRII LGF FLT GI++G VWANEAWGSYW+WDPKETWA ITW +F  YLH+R    WEG  +AI+  +GF +IWICY GVN LG GLHSYG
Sbjct:   67 FPLSNLYESLLFLTWTLLTIYLYVEFKTKSKLVGAILIPVALLINGFANLTLSVDMQKSSPLVPALQSNWLMLHVSMMMLSYGTLIMGSLLCILFLVISKYQDIDLQILDESSLPLYNIM----LDYYEAK--LFSPSDEVSELGKLKLLQSLDNWSYRIIGLGFPFLTIGIIAGGVWANEAWGSYWSWDPKETWALITWIVFATYLHSRITKGWEGKKTAILGGLGFFVIWICYLGVNFLGKGLHSYG 309          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_PORPU (Cytochrome c biogenesis protein ccsA OS=Porphyra purpurea GN=ccsA PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.831e-53
Identity = 111/257 (43.19%), Postives = 143/257 (55.64%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNF-------VHVNGSFCFSEIQ-YMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYG 748
            FPLS+LYE            H   + K     + A++ P A F   FA+     +M ++  LVPAL+  WLMMHVS+M++ Y              +IT  + I L              +  N SF FS     + E+ N+ +NS       R  +++ +D  SYRII LGF  LT GI++GAVWANEAWGSYW+WDPKETWA ITW IF  YLH R    W+G   AI+AS+GFL++WICY GVN LG GLHSYG
Sbjct:   66 FPLSNLYESLLFLAWGLTFVHLFIESKTKSRLIGAVSIPVAMFVTAFASLALPIEMQKASPLVPALKSNWLMMHVSIMMISYSILILGSLLSILFLIITRGQDINLKGSSVGTGSYTVKSLDSNPSFAFSNPSGIVQEQSNMLINST------RMNLLESIDNLSYRIIGLGFPLLTIGIVAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHCRITKSWQGKRPAILASVGFLVVWICYLGVNFLGKGLHSYG 316          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_GALSU (Cytochrome c biogenesis protein ccsA OS=Galdieria sulphuraria GN=ccsA PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.957e-53
Identity = 111/252 (44.05%), Postives = 146/252 (57.94%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTK-MHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE              I +FK     + AI +P +  T  F+ S FL K M +   L+PAL+  WL+MHVS++++ Y              + +   ++ L L R N ++   +   +     N+       +L  +N  +  ++  +D  SYRII LGF FLT GI+SGAVWANEAWGSYW+WDPKETWA ITW IF IYLHTR N  W+G  SAIVA  GF+++WICY GVN LG GLHSYG F
Sbjct:   72 FPLSNLYESLLFLSWSLTTIQLILEFKFKHKLIGAIASPISTLTLAFS-SFFLPKYMQEVSPLIPALKSNWLLMHVSVILISYAMLL----------IGSLLSILFLLLSRNNKLNYTKNNNLTTASNSND-------TLILKNEDKLNLLNTIDNLSYRIIGLGFPFLTIGIISGAVWANEAWGSYWSWDPKETWALITWIIFAIYLHTRINKSWQGKKSAIVAGFGFVVVWICYLGVNFLGKGLHSYGWF 305          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_ADICA (Cytochrome c biogenesis protein ccsA OS=Adiantum capillus-veneris GN=ccsA PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 7.692e-52
Identity = 109/256 (42.58%), Postives = 145/256 (56.64%), Query Frame = 2
Query:    5 PLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRY--------QVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYG 748
            PL +LYE            + I + ++      A+ AP A     FAT     +M    +LVPALQ QWLMMHVS M++ Y               + + KV  + L+ K       SF F     MN +KN++  +  A NY  +        Q+I  LD+W+ + ISLGF  LT GILSGAVWANEAWGSYW+WDPKETWA +TW ++ IYLHT+ + +  G   A+ ASMGF ++WIC+ GVNLLG+GLH+YG
Sbjct:   66 PLGNLYESLMFLSWGFSLLYLILEVRDQIGLSHAVLAPGAMLIHAFATLSLPQQMRSPTLLVPALQSQWLMMHVSAMLISYITLLCGSLLAITLLSLFYGKVGSVTLEHK---FEKQSFFF----LMNPRKNLWKQT-GAENYSYFLISNSRKCQLINCLDKWACQTISLGFSLLTIGILSGAVWANEAWGSYWSWDPKETWALVTWLVYAIYLHTKVDKRKMGEGPAMTASMGFFLVWICFLGVNLLGVGLHNYG 313          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_CHLRE (Cytochrome c biogenesis protein ccsA OS=Chlamydomonas reinhardtii GN=ccsA PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 4.221e-50
Identity = 109/255 (42.75%), Postives = 141/255 (55.29%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNN---QNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSFN 757
            FPLS+LYE            + ++        +  L ++ AP +     FAT     +M Q+  LVPALQ  WLMMHV++M++ Y              + +   ++ L L    F H  G+          +K + F+N+              LD  SYRII LGF FLT GILSGAVWANEAWGSYW+WDPKETWA +TW +F IYLHTR    WEG   AI+A++GFL++W CY GVNL+G GLHSYG FN
Sbjct:  136 FPLSNLYESLMFLAWCCTFLYLLYCTSFTLLVEKMLGSLIAPCSLLMNAFATFSLPKEMQQASPLVPALQSNWLMMHVTVMIISY----------ATLIIGSLLSILFLIL----FKHKKGT---------PKKYDNFINN--------------LDALSYRIIGLGFPFLTIGILSGAVWANEAWGSYWSWDPKETWALLTWLVFAIYLHTRLTKGWEGEKPAIIAAVGFLVVWFCYLGVNLIGEGLHSYGFFN 353          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_MESVI (Cytochrome c biogenesis protein ccsA OS=Mesostigma viride GN=ccsA PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.513e-50
Identity = 105/252 (41.67%), Postives = 138/252 (54.76%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLN-SLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS++YE            H + +     N +  IT P A     FAT      M  S  LVPAL+  WL+MHV++M+  Y               +T+ K I L           G+     I  +N++ N ++   +  +     ++ + +D  SYR I +GF  LT GI+SGAVWAN+AWGSYW+WDPKETWA ITW IF IYLHTR    W+G   AIVA +GF+I+W+CY GVNLLG GLHSYG F
Sbjct:   66 FPLSNMYESLMFLCWCFTFFHLLIEKYIQINFIGFITVPIAMLVNAFATFFLPLDMQHSTPLVPALKSNWLIMHVTIMMASYAALILGSLLSIAFLFLTYNKQIEL----------QGN----SIGNINDEMNSYITIDIEFQKNESIELAKLIDNLSYRTIGIGFPLLTIGIISGAVWANDAWGSYWSWDPKETWALITWIIFAIYLHTRITKGWQGRRPAIVAFIGFVIVWVCYLGVNLLGQGLHSYGWF 303          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_GUITH (Cytochrome c biogenesis protein ccsA OS=Guillardia theta GN=ccsA PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.604e-49
Identity = 100/252 (39.68%), Postives = 134/252 (53.17%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSFN 757
            FPLS+LYE                ++K N   + AI +P + F   F+T      M ++  LVPAL+  WLMMHVS+M+L Y              V+         +K +   H    F F+ +++   K           N   + +++ LD  SYR I  GF  LT GI++GAVWANEAWG+YW+WDPKETWA ITW +F  YLH R    W G   A +A++GF+++WICY GVN LG GLHSYG  N
Sbjct:   68 FPLSNLYESLMFLTWGLLFSAIYLEYKTNLYLIGAIVSPISLFIVSFSTLSLPQDMQKAAPLVPALKSNWLMMHVSVMMLSYSTLIIGSLLAILYLVL---------IKAQQKKHSLKDFAFANLEFTFPKST---------NSTNFNLLETLDNLSYRTIGFGFPLLTIGIIAGAVWANEAWGTYWSWDPKETWALITWLVFAAYLHARITKSWTGERPAYLAALGFVVVWICYLGVNFLGKGLHSYGWLN 301          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_MICAN (Cytochrome c biogenesis protein ccsA OS=Microcystis aeruginosa (strain NIES-843) GN=ccsA PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.667e-49
Identity = 104/266 (39.10%), Postives = 139/266 (52.26%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVF---------------LNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FP+S+LYE            H I ++ +    +  +T P A     FAT     +M  S  LVPAL+  WLMMHVS+M+L Y              ++T  + I L    K      G++             +F               L +++  +  R  + + LD  SYR+I LGF  LT GI++GAVWANEAWGSYW+WDPKETWA ITW +F  YLH R    W+G   AI+A+ GF+++W+CY GVNLLG GLHSYG F
Sbjct:   66 FPISNLYESLFFLAWGVTAVHLIAEYTSRSRLVGVVTTPVAMGITAFATLSLPGEMQTSAPLVPALKSNWLMMHVSVMMLSYAALMVGSLMAIAFLIVTRGQNIEL----KGSSVGTGAYRLQNKLSTTLSAPIFMETANGGTTALLTPTLTAMATLSPQRLSLAETLDNISYRVIGLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHARITRGWQGRKPAILAASGFVVVWVCYLGVNLLGKGLHSYGWF 327          
BLAST of CV712683 vs. ExPASy Swiss-Prot
Match: CCSA_NOSP7 (Cytochrome c biogenesis protein ccsA OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ccsA PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.960e-49
Identity = 107/287 (37.28%), Postives = 144/287 (50.17%), Query Frame = 2
Query:    2 FPLSDLYEXXXXXXXXXXXXHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXXVITFRKVIRL------------------------------------FLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNWDPKETWAFITWTIFGIYLHTRTNTKWEGVNSAIVASMGFLIIWICYFGVNLLGIGLHSYGSF 754
            FPLS+LYE            H I +  +    +  +TAP A     FAT    ++M  S  LVPAL+  WLMMHVS+M+L Y              ++T  + I+L                                    F + ++  + NG+   + +  +   +   + S    +  R  + + LD  SYRII LGF  LT GI++G VWANEAWGSYW+WDPKETWA ITW +F  YLH R    W+G   AI+A+ GF+++WICY GVNLLG GLHSYG F
Sbjct:   66 FPLSNLYESLFFLTWGITTVHLIAESSSRSRLVGVVTAPVAMLIAAFATMTLPSQMQASEPLVPALKSNWLMMHVSVMMLSYSALMVGALLAIAFLIVTRGQNIQLQGSSVGTGGYRSNGYRLHKAAELISQPPAPSAENNGFARFESSSNGNGNANTAVLNLVTTSEPQTVASAEPLSPQRLSLAETLDNISYRIIGLGFPLLTIGIIAGGVWANEAWGSYWSWDPKETWALITWLVFAAYLHARITRGWQGRRPAILAATGFVVVWICYLGVNLLGKGLHSYGWF 352          
The following BLAST results are available for this feature:
BLAST of CV712683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
CCSA_PORYE6.293e-5443.19Cytochrome c biogenesis protein ccsA OS=Porphyra y... [more]
CCSA_ODOSI1.073e-5344.18Cytochrome c biogenesis protein ccsA OS=Odontella ... [more]
CCSA_PORPU1.831e-5343.19Cytochrome c biogenesis protein ccsA OS=Porphyra p... [more]
CCSA_GALSU6.957e-5344.05Cytochrome c biogenesis protein ccsA OS=Galdieria ... [more]
CCSA_ADICA7.692e-5242.58Cytochrome c biogenesis protein ccsA OS=Adiantum c... [more]
CCSA_CHLRE4.221e-5042.75Cytochrome c biogenesis protein ccsA OS=Chlamydomo... [more]
CCSA_MESVI5.513e-5041.67Cytochrome c biogenesis protein ccsA OS=Mesostigma... [more]
CCSA_GUITH1.604e-4939.68Cytochrome c biogenesis protein ccsA OS=Guillardia... [more]
CCSA_MICAN4.667e-4939.10Cytochrome c biogenesis protein ccsA OS=Microcysti... [more]
CCSA_NOSP77.960e-4937.28Cytochrome c biogenesis protein ccsA OS=Nostoc pun... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001M02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712683 ID=CV712683; Name=CV712683; organism=Citrus sinensis; type=EST; length=831bp
TTTCCCATTAAGTGATTTATATGAATCATTAATCTTTCTTTCATGGAGTT
TATCTATTATTCATAAGATTTTTGATTTTAAAAATAATCAAAATCATTTA
AGCGCTATAACGGCACCAAGTGCTTTTTTTACCCAAGGCTTTGCGACTTC
GGGTTTTTTAACCAAAATGCATCAATCCAGAATATTAGTACCCGCTCTCC
AAGTCCAGTGGTTAATGATGCACGTAAGTATGATGGTATTGGGCTATGCA
GCTCTTTTATGTGGATCATTATTATCCACGGCTCTTCTAGTCATTACATT
TCGAAAAGTGATAAGGCTTTTTTTGAAAAGAAAAAATTTTGTACATGTAA
ATGGGTCATTTTGTTTCAGTGAAATCCAATACATGAACGAAAAAAAGAAT
GTTTTTCTAAATAGTCTTTCCGCTAGAAATTATTACAGGTATCAAGTGAT
TCAACAATTGGATCGTTGGAGTTATCGTATTATTAGTTTAGGATTTATCT
TTTTAACCACAGGTATTCTTTCGGGAGCAGTATGGGCTAATGAGGCGTGG
GGGTCTTATTGGAATTGGGATCCAAAAGAAACTTGGGCATTTATTACTTG
GACGATATTCGGGATTTATTTACATACTCGAACAAATACAAAATGGGAAG
GTGTAAATTCCGCAATTGTGGCTTCTATGGGCTTTCTTATAATTTGGATA
TGCTATTTCGGAGTCAATCTATTAGGAATAGGGTTACATAGTTATGGTTC
ATTTAATTAACACCTATTTGAATTGAAGAAAGGGTTTGATGAATACAAAC
ATAGGACAGCGCGGAGATCGAAACGAAACTT
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