CV712663 | Citrus Genome Database

Overview


Name	CV712663
Unique Name	CV712663
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	821

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CV712663 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.697e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = -1

Query:  456 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 683
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 142.51 bits (358), Expect = 2.697e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = -1

Query:  228 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 455
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 92.8189 bits (229), Expect = 2.451e-18
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = -1

Query:  684 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 821
            QDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CV712663 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.677e-32
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = -1

Query:  456 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 683
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 137.502 bits (345), Expect = 8.677e-32
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = -1

Query:  228 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 455
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 90.1225 bits (222), Expect = 1.589e-17
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = -1

Query:  684 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 821
            QDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CV712663 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.457e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = -1

Query:  456 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 683
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

HSP 2 Score: 125.176 bits (313), Expect = 4.457e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = -1

Query:  228 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 455
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

HSP 3 Score: 83.9593 bits (206), Expect = 1.139e-15
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = -1

Query:  684 DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 818
            DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   32 DKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

[Close]

BLAST of CV712663 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.297e-27
Identity = 58/77 (75.32%), Postives = 69/77 (89.61%), Query Frame = -1

Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 455
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG+
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGGY 77

HSP 2 Score: 122.479 bits (306), Expect = 2.889e-27
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = -1

Query:  456 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 683
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

HSP 3 Score: 84.7297 bits (208), Expect = 6.675e-16
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = -1

Query:  684 DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 818
            DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   32 DKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

[Close]

BLAST of CV712663 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.098e-26
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = -1

Query:  462 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 650
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

HSP 2 Score: 120.553 bits (301), Expect = 1.098e-26
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = -1

Query:  234 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 422
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

HSP 3 Score: 89.7373 bits (221), Expect = 2.075e-17
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = -1

Query:  690 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 821
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

[Close]

BLAST of CV712663 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.891e-21
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = -1

Query:  225 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 449
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGGF
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGF 77

HSP 2 Score: 98.9821 bits (245), Expect = 3.420e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = -1

Query:  456 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 677
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of CV712663 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.176e-20
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = -1

Query:  225 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 449
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 77

HSP 2 Score: 99.3673 bits (246), Expect = 2.619e-20
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = -1

Query:  456 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 677
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of CV712663 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.535e-20
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = -1

Query:  225 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 449
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 77

HSP 2 Score: 98.9821 bits (245), Expect = 3.420e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = -1

Query:  456 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 677
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of CV712663 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.619e-20
Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = -1

Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 455
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGGF
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGGF 77

HSP 2 Score: 97.0561 bits (240), Expect = 1.300e-19
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = -1

Query:  456 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 683
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76

[Close]

BLAST of CV712663 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.420e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = -1

Query:  456 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 677
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 98.9821 bits (245), Expect = 3.420e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = -1

Query:  228 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 449
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

The following BLAST results are available for this feature:

BLAST of CV712663 vs. ExPASy Swiss-Prot

BLAST of CV712663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99


Match Name	E-value	Identity	Description
UBIQ_LEIMA	2.697e-33	93.42	Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1	[more]
UBIQ_LEITA	8.677e-32	90.79	Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3...	[more]
UBIL_NPVOP	4.457e-28	80.26	Ubiquitin-like protein OS=Orgyia pseudotsugata mul...	[more]
UBIL_NPVAC	1.297e-27	75.32	Ubiquitin-like protein OS=Autographa californica n...	[more]
UBIQ_LUMTE	1.098e-26	95.24	Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ...	[more]
RUB1_ARATH	6.891e-21	64.00	NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN...	[more]
RUB1_DESAN	1.176e-20	64.00	NEDD8-like protein RUB1 OS=Deschampsia antarctica ...	[more]
RUB1_ORYSJ	1.535e-20	62.67	NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap...	[more]
NEDD8_CAEEL	2.619e-20	61.04	NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1	[more]
RUB2_ORYSJ	3.420e-20	63.51	NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_0001L15_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L15, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV712663 ID=CV712663; Name=CV712663; organism=Citrus sinensis; type=EST; length=821bp
TAAGTACTGCACATTAAACATGTATTTATTCAAGAAAAAGATTCTTAGAT
ATTATAATGGGACGTTAGTGGGACCATATCAATATCTTAGAAACAGAGTT
CAACTACCACAAACCAAAATAAACTTCAAATAGTTATTTAAGCTATTTCA
CCAATAGCCAGCAAACATTAACCAAGACAAACCGAAGCAAATAAGACACA
CACACACCCAGATGACCAAACTCAGAAACCTCCACGGAGTCGGAGCACAA
GATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTTCCA
TCCTCAAGTTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAAT
CCCCTCCTTATCCTGGATCTTAGCCTTCACATTGTCAATTGTGTCCGAAC
TCTCAACCTCCAACGTGATGGTTTTCCCAGTGAGTGTCTTCACAAAAATC
TGCATACCACCACGGAGGCGAAGAACCAAGTGAAGAGTGGATTCTTTCTG
GATGTTATAGTCTGCAAGAGTCCTTCCATCTTCAAGCTGCTTTCCAGCAA
AAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTGAATTTTT
GCTTTCACGTTGTCAATGGTGTCAGAACTTTCAACCTCAAGAGTAATTGT
TTTTCCGGTGAGGGTTTTCACAAAGATCTGCATGCCACCACGGAGACGAA
GCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTA
CGACCATCTTCAAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGG
TGGGATGCCCTCCTTGTCCTG