CV712660

Overview
NameCV712660
Unique NameCV712660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 3.384e-53
Identity = 98/191 (51.31%), Postives = 133/191 (69.63%), Query Frame = 3
Query:  174 IIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            ++  ++I YTK  IN ++ D+ SGK FPV++P T E +  V EGD ED+D+AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E+ N GK Y  +  +++   ++ L Y AGWADKI G T+P DGN+   T HEPIGV GQI+PWNFPL++  WK+ PAL+CGNT+V+K AEQTPLTA
Sbjct:   12 LLTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTA 202          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.845e-53
Identity = 96/191 (50.26%), Postives = 134/191 (70.16%), Query Frame = 3
Query:  174 IIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            ++  ++  YTK  IN ++ D+ SGK FPV++P T E +  V EGD ED+++AVA AR+AF  G PW  M   ER R++ + ADL+E++   LA +E+ N GK +  +   ++   ++ L Y AGWADKI G T+P DGN+   T HEP+GV GQI+PWNFPLL+F WK+APAL+CGNT+V+K AEQTPL+A
Sbjct:   11 LLTDLKFQYTKIFINNEWHDSVSGKKFPVFNPATEEKLCEVEEGDKEDVNKAVAAARQAFQIGSPWRTMDASERGRLLYKLADLVERDRLILATMESMNGGKLFSNAYLMDLGGCLKTLRYCAGWADKIQGRTIPSDGNFFTYTRHEPVGVCGQILPWNFPLLMFLWKIAPALSCGNTVVVKPAEQTPLSA 201          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.886e-52
Identity = 99/197 (50.25%), Postives = 135/197 (68.53%), Query Frame = 3
Query:  168 EPIIPP----VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            +P +P     ++I +TK  IN ++ D+ S K FPV +P T EVI +V EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADL+E++   LA +E+ N GK +  +   +V + ++ L Y+AGWADKIHG T+P DGN    T  EPIGV GQI+PWN PL++FTWK+ PAL+CGNT+V+K AEQTPLTA
Sbjct:    6 QPAVPAPLANLKIQHTKIFINNEWHDSVSSKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATMESMNAGKVFAHAYLLDVEISIKALQYFAGWADKIHGQTIPSDGNIFTYTRREPIGVCGQIIPWNGPLIIFTWKLGPALSCGNTVVVKPAEQTPLTA 202          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 203.371 bits (516), Expect = 1.089e-51
Identity = 100/197 (50.76%), Postives = 134/197 (68.02%), Query Frame = 3
Query:  168 EPIIPP----VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            +P +P     ++I +TK  IN ++ D+ SGK FPV +P T EVI +V EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADL+E++   LA +E  N GK +  +  S++   ++ L Y AGWADKIHG T+P DG+    T  EPIGV GQI+PWNFPLL+F WK+ PAL+CGNT+V+K AEQTPLTA
Sbjct:    6 QPAVPAPLANLKIQHTKIFINNEWHDSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATIEAINGGKVFANAYLSDLGGSIKALKYCAGWADKIHGQTIPSDGDIFTFTRREPIGVCGQIIPWNFPLLMFIWKIGPALSCGNTVVVKPAEQTPLTA 202          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.089e-51
Identity = 97/187 (51.87%), Postives = 130/187 (69.52%), Query Frame = 3
Query:  186 VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            ++I YTK  IN ++ D+ SGK F V++P   E I  VAEGD  DID+AV  ARKAF+ G PW  M   ER R++ + ADL+E++   LA +E  + GK +  +   ++   ++ + Y AGWADKIHG TVP DGN+   T HEP+GV GQI+PWNFPL++F WK+APAL CGNT+V+K AEQTPL+A
Sbjct:   24 LKIKYTKIFINNEWHDSVSGKKFEVFNPANEEKICEVAEGDKADIDKAVKAARKAFELGSPWRTMDASERGRLLNKLADLVERDRLTLATMEAIDGGKLFSTAYLMDLGACIKTIRYCAGWADKIHGRTVPMDGNFFTFTRHEPVGVCGQIIPWNFPLVMFIWKIAPALCCGNTVVVKPAEQTPLSA 210          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.425e-51
Identity = 99/201 (49.25%), Postives = 135/201 (67.16%), Query Frame = 3
Query:  147 STAAVVEEPI-IPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            S++A+ + P  +  +Q  YTK  IN ++  + SGK FPV++P T E +  V EGD ED+D+AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E  N GK +  +   ++   ++ L Y AGWADKI G T+P DGN+   T  EP+GV GQI+PWNFPLL+F WK+ PAL+CGNT+V+K AEQTPLTA
Sbjct:    2 SSSAMPDVPAPLTNLQFKYTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTA 202          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 202.216 bits (513), Expect = 2.425e-51
Identity = 98/197 (49.75%), Postives = 134/197 (68.02%), Query Frame = 3
Query:  168 EPIIPP----VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            +P +P     ++I +TK  IN ++ ++ SGK FPV +P T EVI +V EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADL+E++   LA +E  N GK +  +  S++   ++ L Y AGWADKIHG T+P DG+    T  EPIGV GQI+PWNFP+L+F WK+ PAL+CGNT+V+K AEQTPLTA
Sbjct:    6 QPAVPAPLADLKIQHTKIFINNEWHNSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATMEALNGGKVFANAYLSDLGGCIKALKYCAGWADKIHGQTIPSDGDIFTYTRREPIGVCGQIIPWNFPMLMFIWKIGPALSCGNTVVVKPAEQTPLTA 202          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 3.167e-51
Identity = 99/201 (49.25%), Postives = 135/201 (67.16%), Query Frame = 3
Query:  147 STAAVVEEPI-IPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            S++A+ + P  +  +Q  YTK  IN ++  + SGK FPV++P T E +  V EGD ED+D+AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E  N GK +  +   ++   ++ L Y AGWADKI G T+P DGN+   T  EP+GV GQI+PWNFPLL+F WK+ PAL+CGNT+V+K AEQTPLTA
Sbjct:    2 SSSAMPDVPAPLTNLQFKYTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDHLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTA 202          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.738e-49
Identity = 93/187 (49.73%), Postives = 128/187 (68.45%), Query Frame = 3
Query:  186 VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            ++I YTK  IN ++ D+ SGK FPV +P T E I  + EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E+ N GK +  +   ++   ++ L Y AGWADKI G T+P DG++   T HEP+GV GQI+PWNFPL++  WK+ PAL+CGNT+++K AEQTPLTA
Sbjct:   11 LKIQYTKIFINNEWHDSVSGKKFPVLNPATEEQICLIEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESLNAGKLFPNAYLMDLGGCIKTLRYCAGWADKIQGRTMPMDGDFFCYTRHEPVGVCGQIIPWNFPLVMLIWKIGPALSCGNTVIVKPAEQTPLTA 197          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: ALDH4_BACSU (Putative aldehyde dehydrogenase dhaS OS=Bacillus subtilis GN=dhaS PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.270e-49
Identity = 95/182 (52.20%), Postives = 124/182 (68.13%), Query Frame = 3
Query:  201 TKNL-INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            TK L I+G+FV +ASG TF   +P T E +  + E  A D+D+AV  ARKAFD+G W  M+P  RSR+M + ADL+E++  ELA LET +NGKP  ++   ++P+ +  + YYAGW  KI G T+P  G Y   T HEP+GV GQI+PWNFPLL+  WK+  AL  G TIVLK AEQTPL+A
Sbjct:   19 TKKLYIDGKFVPSASGATFDTPNPATGETLMTLYEAQAADVDKAVKAARKAFDQGEWRTMSPASRSRLMYKLADLMEEHKTELAQLETLDNGKPINETTNGDIPLAIEHMRYYAGWCTKITGQTIPVSGAYFNYTRHEPVGVVGQIIPWNFPLLMAMWKMGAALATGCTIVLKPAEQTPLSA 200          
The following BLAST results are available for this feature:
BLAST of CV712660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 496
Match NameE-valueIdentityDescription
AL1A1_HUMAN3.384e-5351.31Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
AL1A1_HORSE9.845e-5350.26Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
AL1A7_MOUSE4.886e-5250.25Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]
AL1A1_RAT1.089e-5150.76Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
AL1A1_CHICK1.089e-5151.87Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
AL1A1_SHEEP2.425e-5149.25Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]
AL1A1_MOUSE2.425e-5149.75Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
AL1A1_BOVIN3.167e-5149.25Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
AL1A1_RABIT1.738e-4949.73Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
ALDH4_BACSU2.270e-4952.20Putative aldehyde dehydrogenase dhaS OS=Bacillus s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L13_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712660 ID=CV712660; Name=CV712660; organism=Citrus sinensis; type=EST; length=744bp
GTTGAATAGGTCGCTTCTTCGCTTTGGCTATGGCAGCTGCTCGCAGAATC
TCCACCTTGCTGTCTCGTTCTTTCCCTTCTGCTTCTCCTTCTCTGCTTCG
CTCTCTTGGTAGGGAGTCTAGCAGGGCAAGAGGCATCAGCAGGTTTAGCA
CAGCTGCTGTTGTTGAAGAGCCAATCATTCCACCTGTTCAAATTAGTTAC
ACTAAGAATTTAATAAATGGCCAATTTGTAGACGCAGCATCAGGCAAAAC
ATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTAATGTTGCTG
AAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCTCGCAAGGCA
TTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAGGTCAAGGAT
TATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGGAGCTGGCAG
CTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCTCTCAAATCT
GAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGGATGGGCTGA
TAAAATCCACGGACTAACTGTCCCTGGTGATGGAAATTACCATATTCAAA
CTTTACATGAACCAATTGGCGTTGCTGGCCAGATAGTTCCCTGGAACTTT
CCTCTTCTCTTGTTTACTTGGAAAGTAGCGCCTGCACTAACTTGTGGCAA
TACTATTGTTCTAAAGTCTGCTGAGCAAACGCCTTTGACTGCTC
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