CV712659

Overview
NameCV712659
Unique NameCV712659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 9.778e-62
Identity = 114/190 (60.00%), Postives = 138/190 (72.63%), Query Frame = -3
Query:  219 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 788
            C AGSR +V E +YDEFV ++  RA +  +GDP   GV+QGPQID EQF+K+L  I SG +  A LECGG   GN+GYF+QPTVFS+V DDM IA++EIFGPVQ I+KFK  D+VI+RAN T +GLAA VFTK  D A T   AL+AGTVW+NCY  F A  PFGG+K+SG GRE G Y L  Y +VK V
Sbjct:  311 CIAGSRIFVEEPIYDEFVRRSIERAKKYTLGDPLLPGVQQGPQIDKEQFQKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVTDDMRIAKEEIFGPVQQIMKFKTIDEVIKRANNTTYGLAAAVFTKDIDKALTFASALQAGTVWVNCYSAFSAQCPFGGFKMSGNGRELGEYGLQEYTEVKTV 500          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 1.081e-60
Identity = 110/190 (57.89%), Postives = 138/190 (72.63%), Query Frame = -3
Query:  219 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 788
            C A SR +V E +YDEFV ++  RA + ++G+P   GV QGPQID EQ+EK+L  I SG +  A LECGG   GN+GYF+QPTVFSDV DDM IA++EIFGPVQ I+KFK  DDVI+RAN T +GL+AG+FT   D A T+  AL++GTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  303 CIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 233.417 bits (594), Expect = 1.081e-60
Identity = 110/190 (57.89%), Postives = 138/190 (72.63%), Query Frame = -3
Query:  219 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 788
            C A SR +V E +YDEFV ++  RA + ++G+P   GV QGPQID EQ+EK+L  I SG +  A LECGG   GN+GYF+QPTVFSDV DDM IA++EIFGPVQ I+KFK  DDVI+RAN T +GL+AG+FT   D A T+  AL++GTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  303 CIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 2.408e-60
Identity = 112/190 (58.95%), Postives = 139/190 (73.16%), Query Frame = -3
Query:  219 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 788
            C A SR +V E +YDEFV ++  RA + I+G+P   GV QGPQID EQ++K+L  I SG +  A LECGG   GN+GYFVQPTVFS+V D+M IA++EIFGPVQ I+KFK  DDVI+RAN T +GL+AGVFTK  D A T+  AL+AGTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  303 CIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVWVNCYGVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: ALDH_ENCBU (Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN=ALDH PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.145e-60
Identity = 111/190 (58.42%), Postives = 138/190 (72.63%), Query Frame = -3
Query:  219 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 788
            CCAGSRT+VHE +Y+EFV ++  RA +R VGDPF    E GPQ+D  Q +K+L  I SG    A LECGG RLG++GYFV+PTVF+DV   M +A++EIFGPVQ I KFK+ D+VI RAN T +GLAA VFTK+ DTA  +  +L AGTVW+N Y+ F    PFGGYK+SG GRE G Y L A+L+VK V
Sbjct:  300 CCAGSRTFVHEDIYEEFVRRSVERAKKRTVGDPFDPKNENGPQVDETQLKKILELIESGKTEGAKLECGGKRLGDKGYFVEPTVFTDVTSSMRVAKEEIFGPVQLIFKFKDVDEVIERANDTSYGLAAAVFTKNIDTALKVANSLEAGTVWVNTYNHFAFQAPFGGYKMSGQGREFGHYGLEAFLEVKTV 489          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.108e-60
Identity = 109/190 (57.37%), Postives = 138/190 (72.63%), Query Frame = -3
Query:  219 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 788
            C A SR +V E +YDEFV ++  RA + ++G+P    V QGPQID EQ+ K+L  I SG +  A LECGG   GN+GYF+QPTVFS+V D+M IA++EIFGPVQ I+KFK  DDVI+RAN T +GL+AG+FTK  D A T+  AL+AGTVW+NCY V  A +PFGG+K+SG GRE G Y L  Y +VK V
Sbjct:  298 CIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLAPEVNQGPQIDKEQYNKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTTYGLSAGIFTKDLDKAVTVSSALQAGTVWVNCYSVVSAQVPFGGFKMSGNGRELGEYGLQQYTEVKTV 487          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 230.72 bits (587), Expect = 7.007e-60
Identity = 110/194 (56.70%), Postives = 139/194 (71.65%), Query Frame = -3
Query:  207 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 788
            C A SR +V E VYDEFV K+  RA + ++G+P   G+ QGPQID EQ +K+L  I SG +  A LECGG R GN+G+FVQPTVFS+V D+M IA++EIFGPVQ I+KFK  DDVI+RAN T +GLAAGVFTK  D A T+  AL+AG VW+NCY +  A  PFGG+K+SG GRE G + L  Y ++K V   +
Sbjct:  303 CVAASRIFVEESVYDEFVRKSVERAKKYVLGNPLTQGINQGPQIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSIDDVIKRANNTTYGLAAGVFTKDLDRAITVSSALQAGVVWVNCYMILSAQCPFGGFKMSGNGRELGEHGLYEYTELKTVAMKI 496          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.195e-59
Identity = 109/190 (57.37%), Postives = 137/190 (72.11%), Query Frame = -3
Query:  219 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 788
            C A SR +V E +YDEFV ++  RA + ++G+P   GV QGPQID EQ++K+L  I SG +  A LECGG   GN+GYF+QPTVFS+V D+M IA++EIFGPVQ I+KFK  DDVI+RAN T +GL AG FTK  D A T+  AL+AGTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  302 CVAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVSDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTTYGLFAGSFTKDLDKAITVSAALQAGTVWVNCYGVVSAQCPFGGFKMSGNGREMGEYGFHEYTEVKTV 491          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: ALDH2_MACPR (Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=Macroscelides proboscideus PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.478e-59
Identity = 108/194 (55.67%), Postives = 139/194 (71.65%), Query Frame = -3
Query:  207 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 788
            C A SR +V E +YDEFV ++  RA + ++G+P   GV QGPQID EQ++K++  I SG +  A LECGG   GN+GYF+QPTVFS+V D+M IA++EIFGPVQ I+KFK  D+VI+RAN T +GLAAGVFTK  D A T+  AL+AGTVW+NCY       PFGG+K+SG GRE G Y L+ Y +VK V   +
Sbjct:   42 CVAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYDKIIDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDEVIKRANNTFYGLAAGVFTKDLDKAVTVSAALQAGTVWVNCYMANSVQCPFGGFKMSGNGRELGEYGLHEYTEVKTVTMKI 235          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 3.478e-59
Identity = 110/190 (57.89%), Postives = 137/190 (72.11%), Query Frame = -3
Query:  219 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 788
            C A SR +V E +YDEFV ++  RA + I+G+P   G  QGPQID EQ++K+L  I SG +  A LECGG   GN+GYFVQPTVFS+V D+M IA++EIFGPVQ I+KFK  DDVI+RAN T +GL+AGVFT   D A T+  AL+AGTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  303 CIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGATQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTNDIDKAVTISSALQAGTVWVNCYGVVTAQCPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
The following BLAST results are available for this feature:
BLAST of CV712659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 452
Match NameE-valueIdentityDescription
AL1A1_CHICK9.778e-6260.00Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
AL1A1_SHEEP1.081e-6057.89Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]
AL1A1_BOVIN1.081e-6057.89Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
AL1A1_HUMAN2.408e-6058.95Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
ALDH_ENCBU3.145e-6058.42Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN... [more]
AL1A1_RABIT4.108e-6057.37Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
AL1A1_RAT7.007e-6056.70Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
AL1A1_HORSE1.195e-5957.37Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
ALDH2_MACPR3.478e-5955.67Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=... [more]
AL1A1_MACFA3.478e-5957.89Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L13_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712659 ID=CV712659; Name=CV712659; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTTTTCAGTGAAAGCTGCCTTGATCAACAGACATGCAT
CATTGTGCTTACAGCACAAAAGAAAGTAAGTTCTTTTAAAGTAAATTATC
CATTTGCTCCATAATTACAAGCTGATATTTGCACGCTGTCCTTATTCATA
AACACAGATTAAAAGGGAGGGGGAACTTCAGGAAACTAGAGCCATGCTGG
GTTCTTCACAGGTTGAACGACGGCCTTTACTTGCAAGTAAGCGTTAAGGC
TGTAAATTCCCTTTTCCCGGCCTATGCCACTCAGCTTGTACCCACCGAAA
GGAATAGCAGCATCAAACACGTCGTAGCAGTTAATCCATACAGTCCCAGC
TCTCAGTGCACGCATCATGGTGTTAGCAGTGTCTGCACTCTTGGTGAAAA
CCCCAGCAGCTAGACCAAAGCGTGTTTTATTTGCTCTTCTTATAACGTCA
TCAGTTTCCTTGAACTTCAAGATGGATTGCACCGGGCCAAAGATTTCATC
CTGTGCTATCAACATGTCATCCTTAACATCTGAGAAGACAGTTGGCTGAA
CAAAGTAGCCTCTGTTGCCCAATCTATCACCTCCACACTCAAGGGTTGCA
TTGCTTTCAATTCCAGACCTTATGTACCTAAGGACCTTCTCAAATTGCTC
TGGATCAATCTGAGGACCTTGTTCAACACCACTCTTGAAGGGATCGCCAA
CAATACGCCTCATAGCACGTGCCTTTGCTTTTTCTACAAACTCGTCATAT
ACACGCTCATGTACATAAGTACGAGATCCAGCACAGCAAC
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