CV712659

Overview
NameCV712659
Unique NameCV712659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 228.024 bits (580), Expect = 4.542e-59
Identity = 108/194 (55.67%), Postives = 140/194 (72.16%), Query Frame = -3
Query:  207 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 788
            C A SR +V E VYDEFV+++  RA + ++G+P   G+ QGPQID EQ +K+L  I SG +  A LECGG R GN+G+FVQPTVFS+V D+M IA++EIFGPVQ I+KFK  DDVI+RAN T +GLAAG+FTK  D A T+  AL+AG VW+NCY +  A  PFGG+K+SG GRE G + L  Y ++K V   +
Sbjct:  303 CVAASRIFVEESVYDEFVKRSVERAKKYVLGNPLTPGINQGPQIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSVDDVIKRANNTTYGLAAGLFTKDLDKAITVSSALQAGVVWVNCYMMLSAQCPFGGFKMSGNGRELGEHGLYEYTELKTVAMKI 496          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.322e-58
Identity = 109/194 (56.19%), Postives = 137/194 (70.62%), Query Frame = -3
Query:  207 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 788
            C A SR +V E +YDEFV ++  RA + I+G+P  SG+ QGPQID EQ  K+L  I SG +  A LECGG R GN+G+FVQPTVFS+V D+M IA++EIFGPVQ I+KFK  DDVI+RAN T +GLAAGVFTK  D A T+  AL+AG VW+NCY       PFGG+K+SG GRE G + L  Y ++K V   +
Sbjct:  303 CVAASRLFVEESIYDEFVRRSVERAKKYILGNPLNSGINQGPQIDKEQHNKILGLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSMDDVIKRANNTTYGLAAGVFTKDLDKAITVSSALQAGMVWVNCYLAVPVQCPFGGFKMSGNGRELGEHGLYEYTELKTVAMQI 496          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 225.713 bits (574), Expect = 2.254e-58
Identity = 109/198 (55.05%), Postives = 140/198 (70.71%), Query Frame = -3
Query:  201 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQ--PVKN 788
            C AGSR +V E +Y+EFV ++  RA RR+VG PF    EQGPQID +Q+ K+L  I+SG+   A LECGG  LG +G+F++PTVFS+V DDM IA++EIFGPVQ IL+FK  D+VI RAN + FGL A VFT   + A T+  A++AGTVWINCY+  +A  PFGG+K+SG GRE G + L  Y +VK V    P KN
Sbjct:  320 CTAGSRIFVEESIYEEFVRRSVERAKRRVVGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTVTVKIPQKN 517          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1A2_CHICK (Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A2 PE=2 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 2.254e-58
Identity = 108/190 (56.84%), Postives = 136/190 (71.58%), Query Frame = -3
Query:  219 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 788
            C AGSR YV E +Y+EFV ++  RA RR+VG PF    EQGPQID +Q+ K+L  I+SGI   A LECGG  LG +G+F++PTVFS+V DDM IA++EIFGPVQ IL+FK  D+VI RAN + FGL A VFT   + A T+  A++AGTVWINCY+  +A  PFGG+K+SG GRE G   L  Y +VK V
Sbjct:  320 CTAGSRIYVEESIYEEFVRRSVERAKRRVVGSPFDPTTEQGPQIDKKQYNKILELIQSGITEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTVDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGESGLREYSEVKTV 509          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1B1_RAT (Aldehyde dehydrogenase X, mitochondrial OS=Rattus norvegicus GN=Aldh1b1 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.944e-58
Identity = 106/190 (55.79%), Postives = 140/190 (73.68%), Query Frame = -3
Query:  219 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 788
            CCAGSRT+V E +Y EF+E+   +A +R VG+PF+   +QGPQ+D EQFEK+L YIR G +  A L CGG+R G RG+F++PTVF +V+DDM IA++EIFGPVQ + KFK+ ++VI+RAN TR+GLAA VFT+  D A    +AL+AGTVW+N Y++     PFGG+K SG GRE G   L AY +VK V
Sbjct:  321 CCAGSRTFVEESIYHEFLERTVEKAKKRKVGNPFELDTQQGPQVDKEQFEKILGYIRLGQKEGAKLLCGGERFGERGFFIKPTVFGNVQDDMRIAREEIFGPVQPLFKFKKIEEVIQRANNTRYGLAAAVFTRDLDKALYFSQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTV 510          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1B1_MOUSE (Aldehyde dehydrogenase X, mitochondrial OS=Mus musculus GN=Aldh1b1 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.022e-58
Identity = 109/198 (55.05%), Postives = 143/198 (72.22%), Query Frame = -3
Query:  201 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVV--QPVKN 788
            CCAGSRT+V E +Y EF+E+   +A +R VG+PF+   +QGPQ+D EQFE++L YIR G +  A L CGG+RLG RG+F++PTVF DV+D M IA++EIFGPVQ + KFK+ ++VI+RAN TR+GLAA VFT+  D A    +AL+AGTVW+N Y++     PFGG+K SG GRE G   L AY +VK V    P KN
Sbjct:  321 CCAGSRTFVEESIYREFLERTVEKAKQRKVGNPFELDTQQGPQVDKEQFERILGYIRLGQKEGAKLLCGGERLGERGFFIKPTVFGDVQDGMRIAKEEIFGPVQPLFKFKKIEEVIQRANNTRYGLAAAVFTRDLDKAIYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLRAYTEVKTVTIKVPEKN 518          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1A7_RAT (Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norvegicus GN=Aldh1a7 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 5.022e-58
Identity = 107/194 (55.15%), Postives = 137/194 (70.62%), Query Frame = -3
Query:  207 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 788
            C A SR +V E +YDEFV ++  RA + ++G+P  SG+ QGPQID EQ  K+L  I SG +  A LECGG R GN+G+FVQPTVFS+V D+M IA++EIFGPVQ I+KFK  D+VI+RAN T +GLAAGVFTK  D A T+  AL+AGTVW+NCY       PFGG+K+SG GRE G   +  Y ++K V   +
Sbjct:  303 CVAASRLFVEESIYDEFVRRSVERAKKYVLGNPLDSGISQGPQIDKEQHAKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSIDEVIKRANNTPYGLAAGVFTKDLDRAITVSSALQAGTVWVNCYLTLSVQCPFGGFKMSGNGREMGEQGVYEYTELKTVAMKI 496          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 5.022e-58
Identity = 110/198 (55.56%), Postives = 140/198 (70.71%), Query Frame = -3
Query:  201 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQ--PVKN 788
            C AGSR +V E +Y+EFV+++  RA RRIVG PF    EQGPQID +Q+ KVL  I+SG+   A LECGG  LG +G+F++PTVFS+V DDM IA++EIFGPVQ IL+FK  D+VI RAN + FGL A VFT   + A  +  A++AGTVWINCY+  +A  PFGG+K+SG GRE G + L  Y +VK V    P KN
Sbjct:  320 CTAGSRIFVEESIYEEFVKRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNKVLELIQSGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTVTVKIPQKN 517          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 6.559e-58
Identity = 109/198 (55.05%), Postives = 140/198 (70.71%), Query Frame = -3
Query:  201 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQ--PVKN 788
            C AGSR +V E +Y+EFV+++  RA RRIVG PF    EQGPQID +Q+ K+L  I+SG+   A LECGG  LG +G+F++PTVFS+V DDM IA++EIFGPVQ IL+FK  D+VI RAN + FGL A VFT   + A  +  A++AGTVWINCY+  +A  PFGG+K+SG GRE G + L  Y +VK V    P KN
Sbjct:  320 CTAGSRIFVEESIYEEFVKRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTVTVKIPQKN 517          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: AL1B1_PONAB (Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.908e-57
Identity = 108/198 (54.55%), Postives = 142/198 (71.72%), Query Frame = -3
Query:  201 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVV--QPVKN 788
            CCAGSRT+V E +Y+EF+E+   +A +R VG+PF+   +QGPQ+D EQFE+VL YI+ G +  A L CGG+R G RG+F++PTVF  V+DDM IA++EIFGPVQ + KFK+ ++VI RAN TR+GLAA VFT+  D A    +AL+AGTVW+N Y++     PFGG+K SG GRE G   L AY +VK V    P KN
Sbjct:  319 CCAGSRTFVEESIYNEFLERTVEKAKQRKVGNPFELDTQQGPQVDKEQFERVLGYIQLGQKEGAKLLCGGERFGERGFFIKPTVFGGVQDDMRIAKEEIFGPVQPLFKFKKMEEVIERANTTRYGLAAAVFTRDLDKAMYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVTIKVPQKN 516          
The following BLAST results are available for this feature:
BLAST of CV712659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 452
Match NameE-valueIdentityDescription
AL1A1_MOUSE4.542e-5955.67Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
AL1A7_MOUSE1.322e-5856.19Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]
AL1A2_HUMAN2.254e-5855.05Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
AL1A2_CHICK2.254e-5856.84Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A... [more]
AL1B1_RAT2.944e-5855.79Aldehyde dehydrogenase X, mitochondrial OS=Rattus ... [more]
AL1B1_MOUSE5.022e-5855.05Aldehyde dehydrogenase X, mitochondrial OS=Mus mus... [more]
AL1A7_RAT5.022e-5855.15Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norv... [more]
AL1A2_MOUSE5.022e-5855.56Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
AL1A2_RAT6.559e-5855.05Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1B1_PONAB1.908e-5754.55Aldehyde dehydrogenase X, mitochondrial OS=Pongo a... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001L13_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712659 ID=CV712659; Name=CV712659; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTTTTCAGTGAAAGCTGCCTTGATCAACAGACATGCAT
CATTGTGCTTACAGCACAAAAGAAAGTAAGTTCTTTTAAAGTAAATTATC
CATTTGCTCCATAATTACAAGCTGATATTTGCACGCTGTCCTTATTCATA
AACACAGATTAAAAGGGAGGGGGAACTTCAGGAAACTAGAGCCATGCTGG
GTTCTTCACAGGTTGAACGACGGCCTTTACTTGCAAGTAAGCGTTAAGGC
TGTAAATTCCCTTTTCCCGGCCTATGCCACTCAGCTTGTACCCACCGAAA
GGAATAGCAGCATCAAACACGTCGTAGCAGTTAATCCATACAGTCCCAGC
TCTCAGTGCACGCATCATGGTGTTAGCAGTGTCTGCACTCTTGGTGAAAA
CCCCAGCAGCTAGACCAAAGCGTGTTTTATTTGCTCTTCTTATAACGTCA
TCAGTTTCCTTGAACTTCAAGATGGATTGCACCGGGCCAAAGATTTCATC
CTGTGCTATCAACATGTCATCCTTAACATCTGAGAAGACAGTTGGCTGAA
CAAAGTAGCCTCTGTTGCCCAATCTATCACCTCCACACTCAAGGGTTGCA
TTGCTTTCAATTCCAGACCTTATGTACCTAAGGACCTTCTCAAATTGCTC
TGGATCAATCTGAGGACCTTGTTCAACACCACTCTTGAAGGGATCGCCAA
CAATACGCCTCATAGCACGTGCCTTTGCTTTTTCTACAAACTCGTCATAT
ACACGCTCATGTACATAAGTACGAGATCCAGCACAGCAAC
back to top