CV712659

Overview
NameCV712659
Unique NameCV712659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: ASTD_NOVAD (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=astD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.015e-11
Identity = 54/182 (29.67%), Postives = 77/182 (42.31%), Query Frame = -3
Query:  249 CCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVE-QGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV-WINCYDVFDAAIPFGGYKLSGIGREKGIYS 788
            C A  R  +   ++DE ++  K  A R IVG PF       GP ID    + +       + S         RL     F+ P +  DV         E+FGP+  +++  + D+ I  AN TRFGL+A +        N     +RAG V W    +   +A PFGG  LSG  R    Y+
Sbjct:  264 CTAARRLIIKASMFDEVIDHVKRLADRIIVGAPFDDPAPFMGPVIDNRTADGLTESFVYLLSSGGRPIKHMVRLQEDRPFLSPAII-DVTAVADRPDVELFGPLLQVVRVDDFDEAIAEANNTRFGLSASLIGGDPQDYNRFWANIRAGVVNWNRPTNGASSAAPFGGVGLSGNHRPSAYYA 444          
BLAST of CV712659 vs. ExPASy Swiss-Prot
Match: MMSA_DICDI (Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Dictyostelium discoideum GN=mmsdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 52/184 (28.26%), Postives = 77/184 (41.85%), Query Frame = -3
Query:  219 FVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGG-----DRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLS-----GIGREKGIYSLNAYLQVKAV 740
            ++ +   RA +  V      G + GP I     +++   I+SGI+  A     G     D   ++G FV PT+ +DVK  M   ++EIFGPV   L     D  I+  N   +G    VFT S   A    R +  G V IN        +PF  +  S     G G   G   +  + Q+K +
Sbjct:  322 WIPELAERAKKLKVAGGAAPGADLGPVISAASKQRIHELIQSGIDEGAKCILDGRNVVVDPEFSKGNFVGPTILTDVKPHMRCYKEEIFGPVLVCLNVDTVDQAIQLINANPYGNGTAVFTSSGAVARKYQREIDVGQVGINL--PIPVPLPFFSFTGSRGSFVGAGHFYGKTGVQFFTQIKTI 503          
The following BLAST results are available for this feature:
BLAST of CV712659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 452
Match NameE-valueIdentityDescription
ASTD_NOVAD6.015e-1129.67N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
MMSA_DICDI7.856e-1128.26Probable methylmalonate-semialdehyde dehydrogenase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L13_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712659 ID=CV712659; Name=CV712659; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTTTTCAGTGAAAGCTGCCTTGATCAACAGACATGCAT
CATTGTGCTTACAGCACAAAAGAAAGTAAGTTCTTTTAAAGTAAATTATC
CATTTGCTCCATAATTACAAGCTGATATTTGCACGCTGTCCTTATTCATA
AACACAGATTAAAAGGGAGGGGGAACTTCAGGAAACTAGAGCCATGCTGG
GTTCTTCACAGGTTGAACGACGGCCTTTACTTGCAAGTAAGCGTTAAGGC
TGTAAATTCCCTTTTCCCGGCCTATGCCACTCAGCTTGTACCCACCGAAA
GGAATAGCAGCATCAAACACGTCGTAGCAGTTAATCCATACAGTCCCAGC
TCTCAGTGCACGCATCATGGTGTTAGCAGTGTCTGCACTCTTGGTGAAAA
CCCCAGCAGCTAGACCAAAGCGTGTTTTATTTGCTCTTCTTATAACGTCA
TCAGTTTCCTTGAACTTCAAGATGGATTGCACCGGGCCAAAGATTTCATC
CTGTGCTATCAACATGTCATCCTTAACATCTGAGAAGACAGTTGGCTGAA
CAAAGTAGCCTCTGTTGCCCAATCTATCACCTCCACACTCAAGGGTTGCA
TTGCTTTCAATTCCAGACCTTATGTACCTAAGGACCTTCTCAAATTGCTC
TGGATCAATCTGAGGACCTTGTTCAACACCACTCTTGAAGGGATCGCCAA
CAATACGCCTCATAGCACGTGCCTTTGCTTTTTCTACAAACTCGTCATAT
ACACGCTCATGTACATAAGTACGAGATCCAGCACAGCAAC
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